Ss1.1-Utr1-UTR010043H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACCAACACTTCCCGGGATGCCCTGTGGGCCAGGAAGTCCGGTCTCTCCTTTCTCTCCCT TTTCCCCTGGCATTCCAGGCATTCCTTGAATGGACAGACCACTTGGTCCTTGGGGTCCAG GGGGACCCTGATGTCCTGGAGGGCCTGTTTCACCCCGAGGGCCATCTGGTCCCTTTGGGC CGGGTTCACCTCGTTGCCCCTTTGGTCCTCGGAGTCCTGGACCACCTGGTGGGCCTGCTG GTCCCAAAGCTCCTTTATTGATTTCAGAACAGGAGCAGGAATGTGGAAGCTCTGGACAGG TCTCCTCATCTCTCAGGCCAGGAAGTTCACAGCATTTGTCTTTATTGGCCCATGAGGTGG AACAAACAATATCAAACATTTGTAACTGGAATGGTGCAGAGTTTCCATTTGGTCCTCTTG ATCTAACCATTCTCCCTAGGACTTCTACACCATCTGATGTGATATTAGACGATGCGTTTA TTGCCTTCTCACCCACTTCCTTGCAGTCAATAACCACTTTGGCCATAGTCTTGCTGACAA TAATGTGTAGCTTATGAAAGCTTCCATAGAAAATTTTCCTAATTTCAGGTCCTTCAAAAG TAACAGTTTGAAAATCCCCACTGTAGTCATAGTTGAAATATGTTAGGGTTTTCCCACCAT TATCTAAAATGACTCCAACCAATGGGTCCGAATTTTTATTTAAAATCTCCCAAAGAGCAA AGGGCTCCTCTGGAGTATCAGGAAGAACGCGGAAGAGAAAACTGATTGTGTAGTCAGAGG GCAATCCTTCTGGATGTAAATATTTGGTTGGCTGGGAAACCAGGGCATCTTTATGAAGGT GGTAACAAGGGTACACATTGAAGGTGCCAGGCTCCATCGAAACCCCTTCCACTGATGAAA AATCCTTTTCAACCAAACCAAACAATTCCATCATCTTAAACCCTGCAAGATCAATGCCAT CCTTATGCACCAGTGGGCAGGTTGCTGACGCAGTTTCGCAGACAAAAGTAATCAACTCAT CTTCAATTTTCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACCAACACTTCCCGGGATGCCCTGTGGGCCAGGAAGTCCGGTCTCTCCTTTCTCTCCCT TTTCCCCTGGCATTCCAGGCATTCCTTGAATGGACAGACCACTTGGTCCTTGGGGTCCAG GGGGACCCTGATGTCCTGGAGGGCCTGTTTCACCCCGAGGGCCATCTGGTCCCTTTGGGC CGGGTTCACCTCGTTGCCCCTTTGGTCCTCGGAGTCCTGGACCACCTGGTGGGCCTGCTG GTCCCAAAGCTCCTTTATTGATTTCAGAACAGGAGCAGGAATGTGGAAGCTCTGGACAGG TCTCCTCATCTCTCAGGCCAGGAAGTTCACAGCATTTGTCTTTATTGGCCCATGAGGTGG AACAAACAATATCAAACATTTGTAACTGGAATGGTGCAGAGTTTCCATTTGGTCCTCTTG ATCTAACCATTCTCCCTAGGACTTCTACACCATCTGATGTGATATTAGACGATGCGTTTA TTGCCTTCTCACCCACTTCCTTGCAGTCAATAACCACTTTGGCCATAGTCTTGCTGACAA TAATGTGTAGCTTATGAAAGCTTCCATAGAAAATTTTCCTAATTTCAGGTCCTTCAAAAG TAACAGTTTGAAAATCCCCACTGTAGTCATAGTTGAAATATGTTAGGGTTTTCCCACCAT TATCTAAAATGACTCCAACCAATGGGTCCGAATTTTTATTTAAAATCTCCCAAAGAGCAA AGGGCTCCTCTGGAGTATCAGGAAGAACGCGGAAGAGAAAACTGATTGTGTAGTCAGAGG GCAATCCTTCTGGATGTAAATATTTGGTTGGCTGGGAAACCAGGGCATCTTTATGAAGGT GGTAACAAGGGTACACATTGAAGGTGCCAGGCTCCATCGAAACCCCTTCCACTGATGAAA AATCCTTTTCAACCAAACCAAACAATTCCATCATCTTAAACCCTGCAAGATCAATGCCAT CCTTATGCACCAGTGGGCAGGTTGCTGACGCAGTTTCGCAGACAAAAGTAATCAACTCAT CTTCAATTTTCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 658-806, + strand, RNAz p=0.807292 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 658-806, + strand, RNAz p=0.807292 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 392-560, gnl|bosTau2|chr14 (50412472-50412304) | |
| 392-560, gnl|Hg17|chr8 (121371186-121371017) | |
| 392-560, gnl|Mm7|chr15 (55518575-55518406) | |
| 658-806, gnl|bosTau2|chr14 (50406935-50406787) | |
| 658-806, gnl|canFam2|chr13 (22197305-22197473) | |
| 658-806, gnl|danRer3|chr4 (22543952-22544103) | |
| 658-806, gnl|dasNov1|scaffold_171387 (4892-4725) | |
| 658-806, gnl|echTel1|scaffold_323275 (110948-110782) | |
| 658-806, gnl|fr1|chrUn (152228702-152228864) | |
| 658-806, gnl|galGal2|chr2 (146955521-146955351) | |
| 658-806, gnl|hg17|chr8 (121365043-121365210) | |
| 658-806, gnl|Hg17|chr8 (121365201-121365053) | |
| 658-806, gnl|loxAfr1|scaffold_46903 (18476-18310) | |
| 658-806, gnl|mm7|chr15 (55513026-55513193) | |
| 658-806, gnl|Mm7|chr15 (55513184-55513036) | |
| 658-806, gnl|monDom2|scaffold_3 (35402769-35402602) | |
| 658-806, gnl|oryCun1|scaffold_199301 (75289-75122) | |
| 658-806, gnl|panTro1|chr7 (124016880-124017047) | |
| 658-806, gnl|rheMac2|chr8 (122804943-122805110) | |
| 658-806, gnl|rn3|chr7 (91973591-91973758) | |
| 658-806, gnl|tetNig1|chr8 (5329800-5329648) | |
| 658-806, gnl|xenTro1|scaffold_330 (537872-537711) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 392-560, gnl|bosTau2|chr14 (50412472-50412304) | |
| 392-560, gnl|Hg17|chr8 (121371186-121371017) | |
| 392-560, gnl|Mm7|chr15 (55518575-55518406) | |
| 658-806, gnl|bosTau2|chr14 (50406935-50406787) | |
| 658-806, gnl|canFam2|chr13 (22197305-22197473) | |
| 658-806, gnl|danRer3|chr4 (22543952-22544103) | |
| 658-806, gnl|dasNov1|scaffold_171387 (4892-4725) | |
| 658-806, gnl|echTel1|scaffold_323275 (110948-110782) | |
| 658-806, gnl|fr1|chrUn (152228702-152228864) | |
| 658-806, gnl|galGal2|chr2 (146955521-146955351) | |
| 658-806, gnl|hg17|chr8 (121365043-121365210) | |
| 658-806, gnl|Hg17|chr8 (121365201-121365053) | |
| 658-806, gnl|loxAfr1|scaffold_46903 (18476-18310) | |
| 658-806, gnl|mm7|chr15 (55513026-55513193) | |
| 658-806, gnl|Mm7|chr15 (55513184-55513036) | |
| 658-806, gnl|monDom2|scaffold_3 (35402769-35402602) | |
| 658-806, gnl|oryCun1|scaffold_199301 (75289-75122) | |
| 658-806, gnl|panTro1|chr7 (124016880-124017047) | |
| 658-806, gnl|rheMac2|chr8 (122804943-122805110) | |
| 658-806, gnl|rn3|chr7 (91973591-91973758) | |
| 658-806, gnl|tetNig1|chr8 (5329800-5329648) | |
| 658-806, gnl|xenTro1|scaffold_330 (537872-537711) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nca (0.136874) | |
| ese (0.126502) |