Ss1.1-Utr1-UTR010044D06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGCCACTCTTGCTCCGGGGTCCCCGCGCCAGAGACGCAGCAGCGCTCCCTTTGCCCACA CCCACCGCTCCCTCGCTCGCCTCTCCTCCCGGAGCCAGTCCGCGCCACCGCAGCCGCCCA GCCCACTGCCACCTCTGCAGCCATGTCCACCAGGACCGTGTCCTCGTCCTCCTACCGCAG AATGTTCGGCGGCCCTGGCACCGCTAGCCGGCCGAGCTCCAGCCGGAGCTACGTGACCAC GTCCACCCGTACCTACAGCCTGGGCAGCGCGCTGCGTCCCAGCACCAGCCGCAGCCTCTA CACCTCGTCCCCGGGCGGCGTGTACGCCACGCGCTCCTCGGCCGTGCGCCTGCGGAGCAG TGTGCCCGGCGTGCGGCTGCTGCAGGACGCGGTGGACTTCTCGCTGGCCGACGCCATCAA CACCGAGTTCAAGAACACCCGCACCAACGAGAAGGTGGAGCTGCAGGAGCTGAATGACCG CTTCGCCAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATTCTGCTAGC CGAGCTCGAGCAACTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGA GATGCGAGAGCTGCGCCGGCAGGTGGACCAGCTCACCAACGACAAGGCCCGCGTCGAGGT GGAGCGCGACAATCTGGCCGAGGACATCATGCGGCTGCGGGAGAAGTTGCAGGAGGAGAC GCTTCAGAGGGAGGAAGCCGAGAGCACTTTGCAGTCTTTCAGACAGGATGTCGACAATGC TTCTTTGGCACGTCTTGACCTGGAGCGCAAAGTGGAATCCTTGCAAGAAGAGATTGCCTT TTTGAAGAAACTGCACGATGAGGAAATCCAGGAGCTGCAGGCTCAGATCCAGGAACAGCA CGTCCAAATCGATATGGATGTTTCCAAGCCTGACCTCACGGCTGCCCTGCGTGATGTCCG CCAGCAGTATGAGAGCGTGGCCGCCAAGAACCTTCAGGAGGCGGAGGAGTGGTACAAGTC CAAGTTTGCCGACCTCTCCGAGGCTGCTAACCGCAACAACGATGCCCTGCGCCAGGCCAA GCAGGAGTCAAATGAGTACCGGAGACAGGTGCAGTCTCTCACCTGTGAAGTGGATGCGCT CAAGGGGACCAACGAGTCTCTGGAACGCCAGATGCGGGAAATGGAAGAGAACTTTGCCGT GGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATGAGATTCAGAACATGAA GGAAGAGATGGCCCGTCACCTTCGTGAATACCAAGACCTGCTGAATGTCAAGATGGCTCT CGACATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGGAGAAGAGAGCAGGATTTCTCT GCCTCTTCCAAATTTTTCTTCCCTGAACCTGAGGGAAACCAATCTGGAATCCCTCCCTCT GGTTGACACCCATTCCAAAAGGACACTTCTGATTAAGACGGTTGAGACCAGAGATGGACA GGTTATCAATGAAACTTCCCAGCATCACGATGATCTGGAATAAGAACTGCATGTACTCTG TGCAGCGAAATATTACCAGCAAGAATAAAAAAGAAATCCGTATCTTCAAGAAATAGCTTT CAAGTGCCTTTCTGCAGTTTTTCAGGAGCGCAAGATAGGTTTGGAATAGGAATAAGCTCT AGTTCTTAAAAACCAACACTCGTAAAAGATTTAGGAAAAAAGTTTACAACATAATCTAGT TTACCGAAGAAGCCTTGTGCTAGAATACTTTTTAAAAAGTATTTTTGAATACCATTAAAA CTGCTTTTTTCCATCAAATATCTGACCAACTTGTTTCTGCTTCAATAAATCTTTGGAAAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGCCACTCTTGCTCCGGGGTCCCCGCGCCAGAGACGCAGCAGCGCTCCCTTTGCCCACA CCCACCGCTCCCTCGCTCGCCTCTCCTCCCGGAGCCAGTCCGCGCCACCGCAGCCGCCCA GCCCACTGCCACCTCTGCAGCCATGTCCACCAGGACCGTGTCCTCGTCCTCCTACCGCAG AATGTTCGGCGGCCCTGGCACCGCTAGCCGGCCGAGCTCCAGCCGGAGCTACGTGACCAC GTCCACCCGTACCTACAGCCTGGGCAGCGCGCTGCGTCCCAGCACCAGCCGCAGCCTCTA CACCTCGTCCCCGGGCGGCGTGTACGCCACGCGCTCCTCGGCCGTGCGCCTGCGGAGCAG TGTGCCCGGCGTGCGGCTGCTGCAGGACGCGGTGGACTTCTCGCTGGCCGACGCCATCAA CACCGAGTTCAAGAACACCCGCACCAACGAGAAGGTGGAGCTGCAGGAGCTGAATGACCG CTTCGCCAACTACATCGACAAGGTGCGCTTCCTGGAGCAGCAGAACAAGATTCTGCTAGC CGAGCTCGAGCAACTCAAGGGCCAGGGCAAGTCGCGCCTGGGGGACCTCTACGAGGAGGA GATGCGAGAGCTGCGCCGGCAGGTGGACCAGCTCACCAACGACAAGGCCCGCGTCGAGGT GGAGCGCGACAATCTGGCCGAGGACATCATGCGGCTGCGGGAGAAGTTGCAGGAGGAGAC GCTTCAGAGGGAGGAAGCCGAGAGCACTTTGCAGTCTTTCAGACAGGATGTCGACAATGC TTCTTTGGCACGTCTTGACCTGGAGCGCAAAGTGGAATCCTTGCAAGAAGAGATTGCCTT TTTGAAGAAACTGCACGATGAGGAAATCCAGGAGCTGCAGGCTCAGATCCAGGAACAGCA CGTCCAAATCGATATGGATGTTTCCAAGCCTGACCTCACGGCTGCCCTGCGTGATGTCCG CCAGCAGTATGAGAGCGTGGCCGCCAAGAACCTTCAGGAGGCGGAGGAGTGGTACAAGTC CAAGTTTGCCGACCTCTCCGAGGCTGCTAACCGCAACAACGATGCCCTGCGCCAGGCCAA GCAGGAGTCAAATGAGTACCGGAGACAGGTGCAGTCTCTCACCTGTGAAGTGGATGCGCT CAAGGGGACCAACGAGTCTCTGGAACGCCAGATGCGGGAAATGGAAGAGAACTTTGCCGT GGAAGCTGCTAACTACCAAGACACTATTGGCCGCCTGCAGGATGAGATTCAGAACATGAA GGAAGAGATGGCCCGTCACCTTCGTGAATACCAAGACCTGCTGAATGTCAAGATGGCTCT CGACATTGAGATTGCCACCTACAGGAAGCTGCTGGAAGGAGAAGAGAGCAGGATTTCTCT GCCTCTTCCAAATTTTTCTTCCCTGAACCTGAGGGAAACCAATCTGGAATCCCTCCCTCT GGTTGACACCCATTCCAAAAGGACACTTCTGATTAAGACGGTTGAGACCAGAGATGGACA GGTTATCAATGAAACTTCCCAGCATCACGATGATCTGGAATAAGAACTGCATGTACTCTG TGCAGCGAAATATTACCAGCAAGAATAAAAAAGAAATCCGTATCTTCAAGAAATAGCTTT CAAGTGCCTTTCTGCAGTTTTTCAGGAGCGCAAGATAGGTTTGGAATAGGAATAAGCTCT AGTTCTTAAAAACCAACACTCGTAAAAGATTTAGGAAAAAAGTTTACAACATAATCTAGT TTACCGAAGAAGCCTTGTGCTAGAATACTTTTTAAAAAGTATTTTTGAATACCATTAAAA CTGCTTTTTTCCATCAAATATCTGACCAACTTGTTTCTGCTTCAATAAATCTTTGGAAAA CTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 437-636, + strand, RNAz p=0.751478 | |
| 861-955, - strand, RNAz p=0.585911 | |
| 1230-1372, + strand, RNAz p=0.992491 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 437-636, + strand, RNAz p=0.751478 | |
| 861-955, - strand, RNAz p=0.585911 | |
| 1230-1372, + strand, RNAz p=0.992491 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 1592-1669, , RaveNnA Score=66.69 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-734, gnl|bosTau2|chr13 (19896792-19897531) | |
| 1-734, gnl|Hg17|chr10 (17311285-17312043) | |
| 1-734, gnl|Mm7|chr2 (13513471-13514190) | |
| 861-1024, gnl|bosTau2|chr13 (19900947-19901110) | |
| 861-1024, gnl|canFam2|chr2 (22509928-22509737) | |
| 861-1024, gnl|danRer3|chr24 (29506854-29507034) | |
| 861-1024, gnl|dasNov1|scaffold_103823 (2232-2422) | |
| 861-1024, gnl|echTel1|scaffold_89498 (975-1172) | |
| 861-1024, gnl|fr1|chrUn (164749177-164748992) | |
| 861-1024, gnl|galGal2|chr2 (19103260-19103112) | |
| 861-1024, gnl|hg17|chr10 (17315758-17315949) | |
| 861-1024, gnl|Hg17|chr10 (17315773-17315936) | |
| 861-1024, gnl|loxAfr1|scaffold_72049 (6548-6701) | |
| 861-1024, gnl|mm7|chr2 (13517727-13517921) | |
| 861-1024, gnl|Mm7|chr2 (13517745-13517908) | |
| 861-1024, gnl|monDom2|scaffold_7 (52317732-52317540) | |
| 861-1024, gnl|oryCun1|scaffold_178329 (49810-50001) | |
| 861-1024, gnl|panTro1|chr5 (129493049-129492931) | |
| 861-1024, gnl|rheMac2|chr9 (17528708-17528899) | |
| 861-1024, gnl|rn3|chr17 (87862372-87862566) | |
| 861-1024, gnl|tetNig1|chrUn_random (16824824-16824650) | |
| 861-1024, gnl|xenTro1|scaffold_553 (740881-741071) | |
| 1151-1372, gnl|bosTau2|chr13 (19902269-19902490) | |
| 1151-1372, gnl|Hg17|chr10 (17317174-17317395) | |
| 1151-1372, gnl|Mm7|chr2 (13519176-13519397) | |
| 1498-1863, gnl|bosTau2|chr13 (19904373-19904738) | |
| 1498-1863, gnl|Hg17|chr10 (17319231-17319598) | |
| 1498-1863, gnl|Mm7|chr2 (13521627-13521986) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-734, gnl|bosTau2|chr13 (19896792-19897531) | |
| 1-734, gnl|Hg17|chr10 (17311285-17312043) | |
| 1-734, gnl|Mm7|chr2 (13513471-13514190) | |
| 861-1024, gnl|bosTau2|chr13 (19900947-19901110) | |
| 861-1024, gnl|canFam2|chr2 (22509928-22509737) | |
| 861-1024, gnl|danRer3|chr24 (29506854-29507034) | |
| 861-1024, gnl|dasNov1|scaffold_103823 (2232-2422) | |
| 861-1024, gnl|echTel1|scaffold_89498 (975-1172) | |
| 861-1024, gnl|fr1|chrUn (164749177-164748992) | |
| 861-1024, gnl|galGal2|chr2 (19103260-19103112) | |
| 861-1024, gnl|hg17|chr10 (17315758-17315949) | |
| 861-1024, gnl|Hg17|chr10 (17315773-17315936) | |
| 861-1024, gnl|loxAfr1|scaffold_72049 (6548-6701) | |
| 861-1024, gnl|mm7|chr2 (13517727-13517921) | |
| 861-1024, gnl|Mm7|chr2 (13517745-13517908) | |
| 861-1024, gnl|monDom2|scaffold_7 (52317732-52317540) | |
| 861-1024, gnl|oryCun1|scaffold_178329 (49810-50001) | |
| 861-1024, gnl|panTro1|chr5 (129493049-129492931) | |
| 861-1024, gnl|rheMac2|chr9 (17528708-17528899) | |
| 861-1024, gnl|rn3|chr17 (87862372-87862566) | |
| 861-1024, gnl|tetNig1|chrUn_random (16824824-16824650) | |
| 861-1024, gnl|xenTro1|scaffold_553 (740881-741071) | |
| 1151-1372, gnl|bosTau2|chr13 (19902269-19902490) | |
| 1151-1372, gnl|Hg17|chr10 (17317174-17317395) | |
| 1151-1372, gnl|Mm7|chr2 (13519176-13519397) | |
| 1498-1863, gnl|bosTau2|chr13 (19904373-19904738) | |
| 1498-1863, gnl|Hg17|chr10 (17319231-17319598) | |
| 1498-1863, gnl|Mm7|chr2 (13521627-13521986) |
| Expressed library(ies): 90 entry(ies) | More info |
| Expressed library(ies): 90 entry(ies) | Help | Less info |
| aor (25.9715) | |
| gul (19.8899) | |
| ova (9.16839) | |
| eep (8.57948) | |
| fat (7.22394) | |
| rec (7.09588) | |
| csk (6.89655) | |
| ese (6.32511) | |
| jca (5.12821) | |
| bla (4.97389) | |
| eru (4.80192) | |
| ret (4.50566) | |
| ski (4.40205) | |
| spc (3.85444) | |
| mga (3.2041) | |
| cov (2.90736) | |
| sug (2.80041) | |
| cut (2.71878) | |
| tra (2.70803) | |
| liv (2.19427) | |
| cmu (2.05033) | |
| vin (1.99534) | |
| cly (1.80963) | |
| nmm (1.72643) | |
| nep (1.65532) | |
| elu (1.54143) | |
| mgm (1.44274) | |
| clu (1.43575) | |
| spl (1.43184) | |
| hea (1.43149) | |
| ste (1.35208) | |
| nlu (1.34177) | |
| cki (1.32188) | |
| nms (1.28315) | |
| sag (1.27901) | |
| sto (1.25877) | |
| cte (1.17096) | |
| lin (1.16482) | |
| cst (1.12029) | |
| bfe (1.049) | |
| med (1.04627) | |
| csp (0.967118) | |
| mgp (0.922722) | |
| sme (0.91631) | |
| ill (0.877963) | |
| eye (0.852515) | |
| mas (0.84122) | |
| cga (0.837287) | |
| amn (0.835422) | |
| ebs (0.828108) | |
| che (0.817884) | |
| nco (0.808669) | |
| cbl (0.803582) | |
| ldo (0.776021) | |
| ctl (0.765345) | |
| thg (0.760746) | |
| hyp (0.714184) | |
| ton (0.702001) | |
| ece (0.687916) | |
| nca (0.684369) | |
| ssp (0.677599) | |
| nje (0.66368) | |
| kid (0.648677) | |
| fco (0.628832) | |
| cty (0.62448) | |
| ecc (0.575175) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| pla (0.534688) | |
| ute (0.531138) | |
| sin (0.524843) | |
| cje (0.495704) | |
| jej (0.494609) | |
| pan (0.471921) | |
| tes (0.415628) | |
| lyg (0.399308) | |
| fcc (0.39557) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| isp (0.300752) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 90 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (25.9715) | |
| gul (19.8899) | |
| ova (9.16839) | |
| eep (8.57948) | |
| fat (7.22394) | |
| rec (7.09588) | |
| csk (6.89655) | |
| ese (6.32511) | |
| jca (5.12821) | |
| bla (4.97389) | |
| eru (4.80192) | |
| ret (4.50566) | |
| ski (4.40205) | |
| spc (3.85444) | |
| mga (3.2041) | |
| cov (2.90736) | |
| sug (2.80041) | |
| cut (2.71878) | |
| tra (2.70803) | |
| liv (2.19427) | |
| cmu (2.05033) | |
| vin (1.99534) | |
| cly (1.80963) | |
| nmm (1.72643) | |
| nep (1.65532) | |
| elu (1.54143) | |
| mgm (1.44274) | |
| clu (1.43575) | |
| spl (1.43184) | |
| hea (1.43149) | |
| ste (1.35208) | |
| nlu (1.34177) | |
| cki (1.32188) | |
| nms (1.28315) | |
| sag (1.27901) | |
| sto (1.25877) | |
| cte (1.17096) | |
| lin (1.16482) | |
| cst (1.12029) | |
| bfe (1.049) | |
| med (1.04627) | |
| csp (0.967118) | |
| mgp (0.922722) | |
| sme (0.91631) | |
| ill (0.877963) | |
| eye (0.852515) | |
| mas (0.84122) | |
| cga (0.837287) | |
| amn (0.835422) | |
| ebs (0.828108) | |
| che (0.817884) | |
| nco (0.808669) | |
| cbl (0.803582) | |
| ldo (0.776021) | |
| ctl (0.765345) | |
| thg (0.760746) | |
| hyp (0.714184) | |
| ton (0.702001) | |
| ece (0.687916) | |
| nca (0.684369) | |
| ssp (0.677599) | |
| nje (0.66368) | |
| kid (0.648677) | |
| fco (0.628832) | |
| cty (0.62448) | |
| ecc (0.575175) | |
| lnt (0.569233) | |
| fce (0.543183) | |
| pla (0.534688) | |
| ute (0.531138) | |
| sin (0.524843) | |
| cje (0.495704) | |
| jej (0.494609) | |
| pan (0.471921) | |
| tes (0.415628) | |
| lyg (0.399308) | |
| fcc (0.39557) | |
| duo (0.345602) | |
| mcp (0.341297) | |
| fhi (0.339155) | |
| isp (0.300752) | |
| fbs (0.175346) | |
| tbr (0.154178) | |
| cag (0.151194) | |
| lun (0.150489) | |
| pty (0.142714) | |
| hlv (0.139256) | |
| pgl (0.118483) | |
| nbm (0.0993246) | |
| eje (0.0988338) |