Ss1.1-Utr1-UTR010044F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGACCTGTCAGCCTCTCCCTCTGGGCCTCGGTCCTCCGCCCGCGCCCGCCGGAGCCTGT TCGCGTCGACTGACCAGAGTCCGCGAATTCAACGCTCCGAGCCTGTCCGGACGCCCCGAC CTCAGCTTTCTGTCCTTTGAAAACACTGAGAATAATGTCCCTGCATCAGTTTTTACTAGA GCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGATTGCCCTTAGCCCCAATAA TCATGAAGTCCACATATATAAGAAGAATGGGAGCCAGTGGGTGAAAGCTCACGAACTCAA GGAGCACAACGGACACATCACAGGTATTGACTGGGCTCCCAAGAGCGACCGCATCGTCAC TTGCGGGGCAGACCGCAATGCCTACGTCTGGAGTCAGAAAGACGGTGTCTGGAAGCCAAC GCTGGTCATCCTGAGAATTAACCGTGCAGCTACTTTCGTCAAGTGGTCCCCGCTGGAGAA CAAATTTGCTGTGGGCAGCGGAGCACGACTCATTTCTGTTTGTTACTTCGAGTCTGAAAA TGACTGGTGGGTGAGCAAGCACATTAAAAAGCCGATTCGCTCCACGGTCCTCAGCTTGGA CTGGCATCCCAACAATGTCTTGCTGGCGGCAGGATCCTGTGACTTCAAATGCAGAGTGTT TTCTGCCTACATTAAAGAAGTGGATGAAAAGCCAGCCAGTACACCCTGGGGCAGCAAGAT GCCTTTTGGTCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGGGTGCACGG GGTCAGCTTCTCTGCCAGCGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACCGTGTC TGTTGCCGATGCCTCCAAGAGTGTGCAGGTCTCCACTCTGAAAACTGAGTTCCTGCCCCT CCTGAGCGTCTCGTTCGTCTCGGAGAACAGCGTCGTGGCTGCCGGCCATGACTGCTGCCC GATGCTCTTTAACTACGATGACCGCGGCTGCCTGACCTTCGTCTCCAAGCTCGACCTTCC GAAACAGAGCATCCAGCGCAACCTGTCCGCCATGGAGCGCTTCCGCAACATGGACAAGCG GGCCACGACCGAGGACCGCAACACGGCCCTGGAGACGCTGCACCAGAACAGCATCACGCA AGTGTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAATTTTGCACTACTGGCATTGA CGGAGCCATGACAATTTGGGATTTCAAGACCTTAGAGTCTTCTATCCAGGGCCTTCGGAT AATGTGAAGCCGAGCGAGCCTCCCAGATCCAGCACGAGGACGGGCAGCTGCGCGGGGGCA GCGCCGCCGTTCGCAGGATGGGAGGAGAGCCGGCCGCCAGAAACACTGAAGACGCGTGTG GCGAGCCATTGTCGTGTGTTTTGTTTGAGTATAATTGGTGCAAGTGTTGGTTTTTTTAAA AGCAGCAGTGATTTGGGTTTTGTTTTCTGTTTTTTTTTGTTTTGCTGTTTCATTCCATTC TTGACCAAAGCTTCTTTTCAAGTAGTTTATTATGGAAAATTGTCACACTAACTTAAAGGA AGGGGGGAGGTATGTAAATTGTCTGCTAAAAACTTAAATAAAAACACTGAATATGTAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGACCTGTCAGCCTCTCCCTCTGGGCCTCGGTCCTCCGCCCGCGCCCGCCGGAGCCTGT TCGCGTCGACTGACCAGAGTCCGCGAATTCAACGCTCCGAGCCTGTCCGGACGCCCCGAC CTCAGCTTTCTGTCCTTTGAAAACACTGAGAATAATGTCCCTGCATCAGTTTTTACTAGA GCCAATCACCTGTCATGCCTGGAACAGGGATCGTACCCAGATTGCCCTTAGCCCCAATAA TCATGAAGTCCACATATATAAGAAGAATGGGAGCCAGTGGGTGAAAGCTCACGAACTCAA GGAGCACAACGGACACATCACAGGTATTGACTGGGCTCCCAAGAGCGACCGCATCGTCAC TTGCGGGGCAGACCGCAATGCCTACGTCTGGAGTCAGAAAGACGGTGTCTGGAAGCCAAC GCTGGTCATCCTGAGAATTAACCGTGCAGCTACTTTCGTCAAGTGGTCCCCGCTGGAGAA CAAATTTGCTGTGGGCAGCGGAGCACGACTCATTTCTGTTTGTTACTTCGAGTCTGAAAA TGACTGGTGGGTGAGCAAGCACATTAAAAAGCCGATTCGCTCCACGGTCCTCAGCTTGGA CTGGCATCCCAACAATGTCTTGCTGGCGGCAGGATCCTGTGACTTCAAATGCAGAGTGTT TTCTGCCTACATTAAAGAAGTGGATGAAAAGCCAGCCAGTACACCCTGGGGCAGCAAGAT GCCTTTTGGTCAGCTGATGTCAGAGTTTGGTGGCAGTGGCACTGGTGGCTGGGTGCACGG GGTCAGCTTCTCTGCCAGCGGGAGCCGCCTGGCCTGGGTCAGCCACGACAGCACCGTGTC TGTTGCCGATGCCTCCAAGAGTGTGCAGGTCTCCACTCTGAAAACTGAGTTCCTGCCCCT CCTGAGCGTCTCGTTCGTCTCGGAGAACAGCGTCGTGGCTGCCGGCCATGACTGCTGCCC GATGCTCTTTAACTACGATGACCGCGGCTGCCTGACCTTCGTCTCCAAGCTCGACCTTCC GAAACAGAGCATCCAGCGCAACCTGTCCGCCATGGAGCGCTTCCGCAACATGGACAAGCG GGCCACGACCGAGGACCGCAACACGGCCCTGGAGACGCTGCACCAGAACAGCATCACGCA AGTGTCTATTTATGAGGTGGACAAGCAAGATTGTCGCAAATTTTGCACTACTGGCATTGA CGGAGCCATGACAATTTGGGATTTCAAGACCTTAGAGTCTTCTATCCAGGGCCTTCGGAT AATGTGAAGCCGAGCGAGCCTCCCAGATCCAGCACGAGGACGGGCAGCTGCGCGGGGGCA GCGCCGCCGTTCGCAGGATGGGAGGAGAGCCGGCCGCCAGAAACACTGAAGACGCGTGTG GCGAGCCATTGTCGTGTGTTTTGTTTGAGTATAATTGGTGCAAGTGTTGGTTTTTTTAAA AGCAGCAGTGATTTGGGTTTTGTTTTCTGTTTTTTTTTGTTTTGCTGTTTCATTCCATTC TTGACCAAAGCTTCTTTTCAAGTAGTTTATTATGGAAAATTGTCACACTAACTTAAAGGA AGGGGGGAGGTATGTAAATTGTCTGCTAAAAACTTAAATAAAAACACTGAATATGTAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 983-1102, - strand, RNAz p=0.703258 | |
| 1016-1135, - strand, RNAz p=0.631439 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 983-1102, - strand, RNAz p=0.703258 | |
| 1016-1135, - strand, RNAz p=0.631439 |
| Aligned organism(s): 51 entry(ies) | More info |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
| 1-125, gnl|bosTau2|chr25 (34872918-34873043) | |
| 1-125, gnl|Hg17|chr7 (98568153-98568278) | |
| 1-125, gnl|Mm7|chr5 (144112489-144112612) | |
| 314-553, gnl|bosTau2|chr25 (34908681-34908920) | |
| 314-553, gnl|Hg17|chr7 (98630303-98630542) | |
| 314-553, gnl|Mm7|chr5 (144152198-144152438) | |
| 321-549, gnl|bosTau2|chr25 (34886118-34886346) | |
| 321-549, gnl|canFam2|chr6 (13237264-13236995) | |
| 321-549, gnl|danRer3|chr3 (37102669-37102414) | |
| 321-549, gnl|dasNov1|scaffold_16411 (11172-10915) | |
| 321-549, gnl|echTel1|scaffold_293702 (58444-58187) | |
| 321-549, gnl|fr1|chrUn (88231292-88231526) | |
| 321-549, gnl|galGal2|chr14 (6465680-6465944) | |
| 321-549, gnl|hg17|chr7 (98586551-98586820) | |
| 321-549, gnl|Hg17|chr7 (98586564-98586792) | |
| 321-549, gnl|loxAfr1|scaffold_38034 (7435-7656) | |
| 321-549, gnl|mm7|chr5 (144124676-144124944) | |
| 321-549, gnl|Mm7|chr5 (144124689-144124917) | |
| 321-549, gnl|monDom2|scaffold_17 (6644709-6644955) | |
| 321-549, gnl|oryCun1|scaffold_174931 (52662-52931) | |
| 321-549, gnl|panTro1|chr6 (100292367-100292636) | |
| 321-549, gnl|rheMac2|chr3 (46554282-46554551) | |
| 321-549, gnl|rn3|chr12 (9859624-9859355) | |
| 321-549, gnl|tetNig1|chrUn_random (159101130-159101359) | |
| 321-549, gnl|xenTro1|scaffold_289 (1107670-1107929) | |
| 643-868, gnl|bosTau2|chr25 (34890318-34890543) | |
| 643-868, gnl|Hg17|chr7 (98596173-98596396) | |
| 643-868, gnl|Mm7|chr5 (144129685-144129910) | |
| 944-1144, gnl|bosTau2|chr25 (34893177-34893377) | |
| 944-1144, gnl|canFam2|chr6 (13228338-13228131) | |
| 944-1144, gnl|danRer3|chr3 (37100775-37100573) | |
| 944-1144, gnl|dasNov1|scaffold_84363 (3667-3874) | |
| 944-1144, gnl|echTel1|scaffold_177124 (1276-1483) | |
| 944-1144, gnl|fr1|chrUn (88232871-88233078) | |
| 944-1144, gnl|galGal2|chr14 (6472095-6472302) | |
| 944-1144, gnl|hg17|chr7 (98601812-98602019) | |
| 944-1144, gnl|Hg17|chr7 (98601819-98602019) | |
| 944-1144, gnl|loxAfr1|scaffold_10865 (47727-47520) | |
| 944-1144, gnl|mm7|chr5 (144133331-144133538) | |
| 944-1144, gnl|Mm7|chr5 (144133338-144133538) | |
| 944-1144, gnl|monDom2|scaffold_17 (6665168-6665375) | |
| 944-1144, gnl|oryCun1|scaffold_179914 (47921-47714) | |
| 944-1144, gnl|panTro1|chr6 (100307259-100307466) | |
| 944-1144, gnl|rheMac2|chr3 (46570205-46570412) | |
| 944-1144, gnl|rn3|chr12 (9851570-9851363) | |
| 944-1144, gnl|tetNig1|chrUn_random (159102508-159102714) | |
| 944-1144, gnl|xenTro1|scaffold_289 (1135739-1135946) | |
| 1227-1616, gnl|bosTau2|chr25 (34895668-34896064) | |
| 1227-1616, gnl|Hg17|chr7 (98608163-98608536) | |
| 1227-1616, gnl|Mm7|chr5 (144137015-144137397) | |
| 1394-1574, gnl|bosTau2|chr12 (12717630-12717815) |
| Aligned organism(s): 51 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-125, gnl|bosTau2|chr25 (34872918-34873043) | |
| 1-125, gnl|Hg17|chr7 (98568153-98568278) | |
| 1-125, gnl|Mm7|chr5 (144112489-144112612) | |
| 314-553, gnl|bosTau2|chr25 (34908681-34908920) | |
| 314-553, gnl|Hg17|chr7 (98630303-98630542) | |
| 314-553, gnl|Mm7|chr5 (144152198-144152438) | |
| 321-549, gnl|bosTau2|chr25 (34886118-34886346) | |
| 321-549, gnl|canFam2|chr6 (13237264-13236995) | |
| 321-549, gnl|danRer3|chr3 (37102669-37102414) | |
| 321-549, gnl|dasNov1|scaffold_16411 (11172-10915) | |
| 321-549, gnl|echTel1|scaffold_293702 (58444-58187) | |
| 321-549, gnl|fr1|chrUn (88231292-88231526) | |
| 321-549, gnl|galGal2|chr14 (6465680-6465944) | |
| 321-549, gnl|hg17|chr7 (98586551-98586820) | |
| 321-549, gnl|Hg17|chr7 (98586564-98586792) | |
| 321-549, gnl|loxAfr1|scaffold_38034 (7435-7656) | |
| 321-549, gnl|mm7|chr5 (144124676-144124944) | |
| 321-549, gnl|Mm7|chr5 (144124689-144124917) | |
| 321-549, gnl|monDom2|scaffold_17 (6644709-6644955) | |
| 321-549, gnl|oryCun1|scaffold_174931 (52662-52931) | |
| 321-549, gnl|panTro1|chr6 (100292367-100292636) | |
| 321-549, gnl|rheMac2|chr3 (46554282-46554551) | |
| 321-549, gnl|rn3|chr12 (9859624-9859355) | |
| 321-549, gnl|tetNig1|chrUn_random (159101130-159101359) | |
| 321-549, gnl|xenTro1|scaffold_289 (1107670-1107929) | |
| 643-868, gnl|bosTau2|chr25 (34890318-34890543) | |
| 643-868, gnl|Hg17|chr7 (98596173-98596396) | |
| 643-868, gnl|Mm7|chr5 (144129685-144129910) | |
| 944-1144, gnl|bosTau2|chr25 (34893177-34893377) | |
| 944-1144, gnl|canFam2|chr6 (13228338-13228131) | |
| 944-1144, gnl|danRer3|chr3 (37100775-37100573) | |
| 944-1144, gnl|dasNov1|scaffold_84363 (3667-3874) | |
| 944-1144, gnl|echTel1|scaffold_177124 (1276-1483) | |
| 944-1144, gnl|fr1|chrUn (88232871-88233078) | |
| 944-1144, gnl|galGal2|chr14 (6472095-6472302) | |
| 944-1144, gnl|hg17|chr7 (98601812-98602019) | |
| 944-1144, gnl|Hg17|chr7 (98601819-98602019) | |
| 944-1144, gnl|loxAfr1|scaffold_10865 (47727-47520) | |
| 944-1144, gnl|mm7|chr5 (144133331-144133538) | |
| 944-1144, gnl|Mm7|chr5 (144133338-144133538) | |
| 944-1144, gnl|monDom2|scaffold_17 (6665168-6665375) | |
| 944-1144, gnl|oryCun1|scaffold_179914 (47921-47714) | |
| 944-1144, gnl|panTro1|chr6 (100307259-100307466) | |
| 944-1144, gnl|rheMac2|chr3 (46570205-46570412) | |
| 944-1144, gnl|rn3|chr12 (9851570-9851363) | |
| 944-1144, gnl|tetNig1|chrUn_random (159102508-159102714) | |
| 944-1144, gnl|xenTro1|scaffold_289 (1135739-1135946) | |
| 1227-1616, gnl|bosTau2|chr25 (34895668-34896064) | |
| 1227-1616, gnl|Hg17|chr7 (98608163-98608536) | |
| 1227-1616, gnl|Mm7|chr5 (144137015-144137397) | |
| 1394-1574, gnl|bosTau2|chr12 (12717630-12717815) |
| Expressed library(ies): 52 entry(ies) | More info |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
| pro (1.02407) | |
| sto (0.719295) | |
| cut (0.679694) | |
| cje (0.660939) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| fbs (0.526039) | |
| cki (0.495704) | |
| cst (0.420109) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| cly (0.361925) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| ton (0.351) | |
| ecc (0.345105) | |
| nco (0.323468) | |
| cty (0.31224) | |
| sme (0.305437) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ova (0.258264) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |
| Expressed library(ies): 52 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pro (1.02407) | |
| sto (0.719295) | |
| cut (0.679694) | |
| cje (0.660939) | |
| cte (0.58548) | |
| cmu (0.55918) | |
| fbs (0.526039) | |
| cki (0.495704) | |
| cst (0.420109) | |
| amn (0.417711) | |
| fcc (0.39557) | |
| elu (0.385356) | |
| eep (0.367692) | |
| cly (0.361925) | |
| pgl (0.35545) | |
| ill (0.351185) | |
| ton (0.351) | |
| ecc (0.345105) | |
| nco (0.323468) | |
| cty (0.31224) | |
| sme (0.305437) | |
| jej (0.296765) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| fce (0.271592) | |
| ova (0.258264) | |
| eru (0.240096) | |
| cbe (0.239234) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| fty (0.17584) | |
| sin (0.174948) | |
| eye (0.170503) | |
| csp (0.161186) | |
| mga (0.160205) | |
| cli (0.152812) | |
| ski (0.146735) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| csk (0.140746) | |
| che (0.136314) | |
| pla (0.133672) | |
| ute (0.132784) | |
| cov (0.132153) | |
| ret (0.128733) | |
| bla (0.124347) | |
| clu (0.119646) | |
| jca (0.11396) | |
| spc (0.113366) |