Non-Coding RNA Search

Ss1.1-Utr1-UTR010044G06.5

Sequence:


               
               GCAGAGTGGGAGGAAAGAGGTGTTAGGGGTTTGGATTTGGTCTTTTTTTTTTTTTTTTTT
TTTTTTGTAATTTCTTGATTTCAACATTTTCCCCCCACCGTCGCGGCTGCAGCCGCCGCC
TCATACCTGTTCCGCGGCAGCCGTGCGCCGCTGGCGGCTGAGGGTTAGAAAGGAGAAGGG
TGTAGTTTGAGATTTTAAACAAAAATTTCGAAGAAAAATCTATTTTTATCCCTCCCCCCT
CCACTGCCTCCTAGCTCATTATTCTGGTTGTTGTTTGAGGGGGGGGACAATTTTTTGCTC
CCTCCCAGCCCCTGCAATTCTGACCAGGCCAGGCTTGGGGGTTTGTTTCTCTGACCTCCA
ATTCCTCTGCGTGCACCTGGCGCTGCTCTTTTTCCCCCTACCTGTTGCAAGTCTGTAATC
TTTGCAATTGGGACTTGCTTGCAGGCACTCCAGCCCTCCATCGCTCCCTGCATTTTGCAA
TTGTCTGGGGGAGGGCACCTGCTCTACCTGCCAGAAATTTTAAAAAGAAAAGAATTTCTC
CGCGCGCCTTCCTGGCCCCTTTCTCCTTGCACTCTCGCTCTCCTGCCCCGCCCCAGGTAA
AGGGGGAGACTCGGAGAAGATGGTGCTCACCGCGGTCCTCCTGCTGCTGGCCGCCTGTGC
CGGACCGGCCCAGGGCCTGGGCTCCTTCGTGCACTGCGAGCCCTGCGACGAGAAAGCCCT
CTCCATGTGCCCCCCCAGCCCCCTTGGCTGTGAGCTGGTCAAGGAGCCTGGCTGCGGCTG
CTGCATGACCTGCGCCCTGGCGGAGGGGCAGTCGTGCGGCGTCTACACTGAGCGCTGCGC
CCAGGGGCTGCGCTGCCTCCCCCGGCAGGACGAGGAGAAGCCGCTGCACGCCCTGCTGCA
CGGCCGCGGGGTTTGCCTCAACGAAAAGAGCTACCGCGAGCAAGCCAAGATCGAGAGAGA
CTCCCGCGAGCACGAGGAGCCGACCACTTCCGAGATGGCGGAGGAGACCTACTCGCCCAA
GATCTTCCGACCCAAGCACACCCGCATCTCCGAGCTGAAGGCAGAGGCCGTGAAGAAGGA
CCGCAGAAAGAAGCTGACCCAGTCCAAGTTCGTGGGGGGAGCTGAGAACACCGCCCACCC
TCGAGTCATCTCGGCGCCTGAGATGAGACAGGAATCTGAGCAGGGTCCCTGCCGCAGGCA
CATGGAGGCTTCCCTGCAGGAGCTCAAAGCCAGCCCGCGCATGGTGCCCCGCGCGGTGTA
CCTGCCCAACTGTGACCGCAAGGGATTCTACAAGAGAAAGCAGTGCAAGCCTTCCCGTGG
CCGCAAACGTGGCATCTGCTGGTGCGTGGACAAGTACGGGATGAAGCTGCCAGGCATGGA
GTACGTGGACGGGGACTTCCAGTGCCACAGCTTCGACAGCAGCAACGTTGAGTGATGCGT
CCCCTCCCCATCCTTCCTCCCTCGCCCCATCCCGCCCCCAGCCCCAACTCCAGCCAGCGC
CTCCCTCCACCCCAGGACGCCACTCATTTCATCTCATTTAAGGGGAAAAAAATACATATA
TCTATCTATTTGAGGGAACTGAGGACCTCGGAATCTCTGGCAAGGTCTCAACTTTGAAAA
CGGCAACAACAGAGATGCAAAAAGCTAAGGAGACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAGTGGGAGGAAAGAGGTGTTAGGGGTTTGGATTTGGTCTTTTTTTTTTTTTTTTTT
TTTTTTGTAATTTCTTGATTTCAACATTTTCCCCCCACCGTCGCGGCTGCAGCCGCCGCC
TCATACCTGTTCCGCGGCAGCCGTGCGCCGCTGGCGGCTGAGGGTTAGAAAGGAGAAGGG
TGTAGTTTGAGATTTTAAACAAAAATTTCGAAGAAAAATCTATTTTTATCCCTCCCCCCT
CCACTGCCTCCTAGCTCATTATTCTGGTTGTTGTTTGAGGGGGGGGACAATTTTTTGCTC
CCTCCCAGCCCCTGCAATTCTGACCAGGCCAGGCTTGGGGGTTTGTTTCTCTGACCTCCA
ATTCCTCTGCGTGCACCTGGCGCTGCTCTTTTTCCCCCTACCTGTTGCAAGTCTGTAATC
TTTGCAATTGGGACTTGCTTGCAGGCACTCCAGCCCTCCATCGCTCCCTGCATTTTGCAA
TTGTCTGGGGGAGGGCACCTGCTCTACCTGCCAGAAATTTTAAAAAGAAAAGAATTTCTC
CGCGCGCCTTCCTGGCCCCTTTCTCCTTGCACTCTCGCTCTCCTGCCCCGCCCCAGGTAA
AGGGGGAGACTCGGAGAAGATGGTGCTCACCGCGGTCCTCCTGCTGCTGGCCGCCTGTGC
CGGACCGGCCCAGGGCCTGGGCTCCTTCGTGCACTGCGAGCCCTGCGACGAGAAAGCCCT
CTCCATGTGCCCCCCCAGCCCCCTTGGCTGTGAGCTGGTCAAGGAGCCTGGCTGCGGCTG
CTGCATGACCTGCGCCCTGGCGGAGGGGCAGTCGTGCGGCGTCTACACTGAGCGCTGCGC
CCAGGGGCTGCGCTGCCTCCCCCGGCAGGACGAGGAGAAGCCGCTGCACGCCCTGCTGCA
CGGCCGCGGGGTTTGCCTCAACGAAAAGAGCTACCGCGAGCAAGCCAAGATCGAGAGAGA
CTCCCGCGAGCACGAGGAGCCGACCACTTCCGAGATGGCGGAGGAGACCTACTCGCCCAA
GATCTTCCGACCCAAGCACACCCGCATCTCCGAGCTGAAGGCAGAGGCCGTGAAGAAGGA
CCGCAGAAAGAAGCTGACCCAGTCCAAGTTCGTGGGGGGAGCTGAGAACACCGCCCACCC
TCGAGTCATCTCGGCGCCTGAGATGAGACAGGAATCTGAGCAGGGTCCCTGCCGCAGGCA
CATGGAGGCTTCCCTGCAGGAGCTCAAAGCCAGCCCGCGCATGGTGCCCCGCGCGGTGTA
CCTGCCCAACTGTGACCGCAAGGGATTCTACAAGAGAAAGCAGTGCAAGCCTTCCCGTGG
CCGCAAACGTGGCATCTGCTGGTGCGTGGACAAGTACGGGATGAAGCTGCCAGGCATGGA
GTACGTGGACGGGGACTTCCAGTGCCACAGCTTCGACAGCAGCAACGTTGAGTGATGCGT
CCCCTCCCCATCCTTCCTCCCTCGCCCCATCCCGCCCCCAGCCCCAACTCCAGCCAGCGC
CTCCCTCCACCCCAGGACGCCACTCATTTCATCTCATTTAAGGGGAAAAAAATACATATA
TCTATCTATTTGAGGGAACTGAGGACCTCGGAATCTCTGGCAAGGTCTCAACTTTGAAAA
CGGCAACAACAGAGATGCAAAAAGCTAAGGAGACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|263306|gb|AAB24874.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|263306|gb|AAB24874.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               361-514, - strand, RNAz p=0.988355

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               361-514, - strand, RNAz p=0.988355

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               361-953, gnl|bosTau2|chr2 (57598899-57599496)
               

               
               361-953, gnl|Hg17|chr2 (217385268-217384668)
               

               
               361-953, gnl|Mm7|chr1 (73116244-73115667)
               


               
               641-916, gnl|bosTau2|chr19 (34229104-34228832)
               

               
               641-916, gnl|Hg17|chr17 (35853541-35853813)
               

               
               641-916, gnl|Mm7|chr11 (99150563-99150835)
               


               
               1301-1656, gnl|bosTau2|chr2 (57617295-57617649)
               

               
               1301-1656, gnl|Hg17|chr2 (217367114-217366764)
               

               
               1301-1656, gnl|Mm7|chr1 (73104372-73104067)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               361-953, gnl|bosTau2|chr2 (57598899-57599496)
               

               
               361-953, gnl|Hg17|chr2 (217385268-217384668)
               

               
               361-953, gnl|Mm7|chr1 (73116244-73115667)
               


               
               641-916, gnl|bosTau2|chr19 (34229104-34228832)
               

               
               641-916, gnl|Hg17|chr17 (35853541-35853813)
               

               
               641-916, gnl|Mm7|chr11 (99150563-99150835)
               


               
               1301-1656, gnl|bosTau2|chr2 (57617295-57617649)
               

               
               1301-1656, gnl|Hg17|chr2 (217367114-217366764)
               

               
               1301-1656, gnl|Mm7|chr1 (73104372-73104067)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               clu (0.717875)
               

               
               jca (0.569801)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.717875)
               

               
               jca (0.569801)
               

               
               nmm (0.265604)
               

               
               ese (0.253004)
               

               
               hea (0.204499)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               med (0.116252)
               

               
               cty (0.10408)
               

               
               nbm (0.0993246)

	361-953, gnl\|bosTau2\|chr2 (57598899-57599496)
	361-953, gnl\|Hg17\|chr2 (217385268-217384668)
	361-953, gnl\|Mm7\|chr1 (73116244-73115667)

	641-916, gnl\|bosTau2\|chr19 (34229104-34228832)
	641-916, gnl\|Hg17\|chr17 (35853541-35853813)
	641-916, gnl\|Mm7\|chr11 (99150563-99150835)

	1301-1656, gnl\|bosTau2\|chr2 (57617295-57617649)
	1301-1656, gnl\|Hg17\|chr2 (217367114-217366764)
	1301-1656, gnl\|Mm7\|chr1 (73104372-73104067)

	clu (0.717875)
	jca (0.569801)
	nmm (0.265604)
	ese (0.253004)
	hea (0.204499)
	nep (0.183925)
	eye (0.170503)
	cli (0.152812)
	spl (0.143184)
	hlv (0.139256)
	pla (0.133672)
	med (0.116252)
	cty (0.10408)
	nbm (0.0993246)