Non-Coding RNA Search

Ss1.1-Utr1-UTR010044H08.5

Sequence:


               
               TGGACACCTTCTTTGAGCCACCCCTGCCCCCTGAGAAGGTCGAAGCCATCAGGAAAATAG
GCTTTGGGACCAACAATAAAATCTTCCTGGAGTTTGAAGAGCCCTTCTGGGAGCCAGGCT
GCGAGCGCATCCAGGTCGTGTGGGAGGACCTGTCTCCCCTGGAAGACGTCGCCCCTGAGC
TGCAGGACGCCTGGTTCAAGAAGCTTATTGGCTTCTGGGTCCTGCCTGCCTCTGGGGCCT
GCCACGTGCTCTGCGGCTTCATCGCCGGGCTGGAGTCCGAGTTCATGGAGACGCTGTCGG
ATGAGGACGTGCTCCTGTCTCTCACCCAGGTGCTCCGCAGGGTGACAGGGAACCCTCGGC
TCCCCGCGCCCAGGAGTGTGCTGAGGTCTCGCTGGCACAGTGCCCCGTACACCCGGGGTT
CCTACAGCTACGTGGCCGTGGGCAGCTCCGGGGACGACTTGGACCTGCTGGCTCAGCCCC
TCCCTGCGGATGGCAAGGGGGCCCAGCTCCAGGTGCTGTTTGCGGGGGAAGCCACACACC
GGACATTTTACTCCACCACGCACGGGGCTCTGCTGTCCGGCTGGAGGGAGGCCGACCGGC
TCATCAGTCTGTGGGACCTGCAGGCACAGCGGCCCGGGCCCAGGCTTTGAGCCTGGCTCT
GCCCCCCTGGTCCCGGGGAGGCTGGCACCACCCTTTCCTCTGACGGACAGGTTCAGCTGG
GTTGGAATTTGGGGTGTCAGTGTCACAGGGGTCAGGTCGCTGCAGTACAGCCAGGGCTGA
TCGCGAAGTCTTCCTGGAGACACCGGATGCCACTGATGGGCCTGGCGGAGCATAAAGTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGACACCTTCTTTGAGCCACCCCTGCCCCCTGAGAAGGTCGAAGCCATCAGGAAAATAG
GCTTTGGGACCAACAATAAAATCTTCCTGGAGTTTGAAGAGCCCTTCTGGGAGCCAGGCT
GCGAGCGCATCCAGGTCGTGTGGGAGGACCTGTCTCCCCTGGAAGACGTCGCCCCTGAGC
TGCAGGACGCCTGGTTCAAGAAGCTTATTGGCTTCTGGGTCCTGCCTGCCTCTGGGGCCT
GCCACGTGCTCTGCGGCTTCATCGCCGGGCTGGAGTCCGAGTTCATGGAGACGCTGTCGG
ATGAGGACGTGCTCCTGTCTCTCACCCAGGTGCTCCGCAGGGTGACAGGGAACCCTCGGC
TCCCCGCGCCCAGGAGTGTGCTGAGGTCTCGCTGGCACAGTGCCCCGTACACCCGGGGTT
CCTACAGCTACGTGGCCGTGGGCAGCTCCGGGGACGACTTGGACCTGCTGGCTCAGCCCC
TCCCTGCGGATGGCAAGGGGGCCCAGCTCCAGGTGCTGTTTGCGGGGGAAGCCACACACC
GGACATTTTACTCCACCACGCACGGGGCTCTGCTGTCCGGCTGGAGGGAGGCCGACCGGC
TCATCAGTCTGTGGGACCTGCAGGCACAGCGGCCCGGGCCCAGGCTTTGAGCCTGGCTCT
GCCCCCCTGGTCCCGGGGAGGCTGGCACCACCCTTTCCTCTGACGGACAGGTTCAGCTGG
GTTGGAATTTGGGGTGTCAGTGTCACAGGGGTCAGGTCGCTGCAGTACAGCCAGGGCTGA
TCGCGAAGTCTTCCTGGAGACACCGGATGCCACTGATGGGCCTGGCGGAGCATAAAGTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21740368|emb|CAD39191.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21740368|emb|CAD39191.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               622-725, + strand, RNAz p=0.700309

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               622-725, + strand, RNAz p=0.700309

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of AY541524, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of AY541524, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               5-349, gnl|bosTau2|chr13 (34990655-34990311)
               

               
               5-349, gnl|canFam2|chr24 (20254115-20253778)
               

               
               5-349, gnl|danRer3|chr1 (39443369-39443032)
               

               
               5-349, gnl|echTel1|scaffold_303400 (55980-55643)
               

               
               5-349, gnl|fr1|chrUn (291848146-291847809)
               

               
               5-349, gnl|galGal2|chr4 (88403359-88403022)
               

               
               5-349, gnl|hg17|chr20 (4111127-4111464)
               

               
               5-349, gnl|Hg17|chr20 (4111152-4111496)
               

               
               5-349, gnl|loxAfr1|scaffold_25688 (27769-28106)
               

               
               5-349, gnl|mm7|chr2 (131261656-131261993)
               

               
               5-349, gnl|Mm7|chr2 (131261681-131262025)
               

               
               5-349, gnl|monDom2|scaffold_68 (536002-536339)
               

               
               5-349, gnl|oryCun1|scaffold_212198 (123444-123107)
               

               
               5-349, gnl|panTro1|chr21 (4068804-4069141)
               

               
               5-349, gnl|rheMac2|chr9 (133019883-133020212)
               

               
               5-349, gnl|rn3|chr3 (119155503-119155840)
               

               
               5-349, gnl|tetNig1|chr18 (5648787-5649124)
               

               
               5-349, gnl|xenTro1|scaffold_366 (1167324-1167661)
               


               
               503-780, gnl|bosTau2|chr26 (35017815-35017523)
               

               
               503-780, gnl|Hg17|chr10 (135093693-135094017)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-349, gnl|bosTau2|chr13 (34990655-34990311)
               

               
               5-349, gnl|canFam2|chr24 (20254115-20253778)
               

               
               5-349, gnl|danRer3|chr1 (39443369-39443032)
               

               
               5-349, gnl|echTel1|scaffold_303400 (55980-55643)
               

               
               5-349, gnl|fr1|chrUn (291848146-291847809)
               

               
               5-349, gnl|galGal2|chr4 (88403359-88403022)
               

               
               5-349, gnl|hg17|chr20 (4111127-4111464)
               

               
               5-349, gnl|Hg17|chr20 (4111152-4111496)
               

               
               5-349, gnl|loxAfr1|scaffold_25688 (27769-28106)
               

               
               5-349, gnl|mm7|chr2 (131261656-131261993)
               

               
               5-349, gnl|Mm7|chr2 (131261681-131262025)
               

               
               5-349, gnl|monDom2|scaffold_68 (536002-536339)
               

               
               5-349, gnl|oryCun1|scaffold_212198 (123444-123107)
               

               
               5-349, gnl|panTro1|chr21 (4068804-4069141)
               

               
               5-349, gnl|rheMac2|chr9 (133019883-133020212)
               

               
               5-349, gnl|rn3|chr3 (119155503-119155840)
               

               
               5-349, gnl|tetNig1|chr18 (5648787-5649124)
               

               
               5-349, gnl|xenTro1|scaffold_366 (1167324-1167661)
               


               
               503-780, gnl|bosTau2|chr26 (35017815-35017523)
               

               
               503-780, gnl|Hg17|chr10 (135093693-135094017)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               hyp (0.142837)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)

	5-349, gnl\|bosTau2\|chr13 (34990655-34990311)
	5-349, gnl\|canFam2\|chr24 (20254115-20253778)
	5-349, gnl\|danRer3\|chr1 (39443369-39443032)
	5-349, gnl\|echTel1\|scaffold_303400 (55980-55643)
	5-349, gnl\|fr1\|chrUn (291848146-291847809)
	5-349, gnl\|galGal2\|chr4 (88403359-88403022)
	5-349, gnl\|hg17\|chr20 (4111127-4111464)
	5-349, gnl\|Hg17\|chr20 (4111152-4111496)
	5-349, gnl\|loxAfr1\|scaffold_25688 (27769-28106)
	5-349, gnl\|mm7\|chr2 (131261656-131261993)
	5-349, gnl\|Mm7\|chr2 (131261681-131262025)
	5-349, gnl\|monDom2\|scaffold_68 (536002-536339)
	5-349, gnl\|oryCun1\|scaffold_212198 (123444-123107)
	5-349, gnl\|panTro1\|chr21 (4068804-4069141)
	5-349, gnl\|rheMac2\|chr9 (133019883-133020212)
	5-349, gnl\|rn3\|chr3 (119155503-119155840)
	5-349, gnl\|tetNig1\|chr18 (5648787-5649124)
	5-349, gnl\|xenTro1\|scaffold_366 (1167324-1167661)

	503-780, gnl\|bosTau2\|chr26 (35017815-35017523)
	503-780, gnl\|Hg17\|chr10 (135093693-135094017)