Ss1.1-Utr1-UTR010045E07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGGAGCTCAACAACAGCCGGCCCGCTCGCCAGGTGCGCCGCCTCGAGTTCAACCAGGCC ATGGACGACTTCAAGACCATGTTCCCCAACATGGATTACGACATCATCGAGTGCGTGCTG CGGGCCAACAGCGGCGCCGTGGACGCCACCATCGACCAGCTGCTGCAGATGAACCTGGAG GCGGGTGGCGGCAGCGTCTACGAGGACAGCTCGGATTCGGAGGACAGCATCCCTCCGGAG ATTTTGGAAAGAACCTTGGAACCCGACAGCTCCGATGAGGAGCCCCCGCCTGTCTACTCC CCGCCAGCCTATCACATGCACATGTTCGACCGGCCTTACCCTCTGGCTCCGCCCACTCCC CCTCCCCGCATCGATGTGCTGGGCTCCGTGCCCCCTTCCAGCCAGAGGCGCTATCGGAAC TGGAACCCCCCACTGCTAGGCAACCTCCCTGAAGACTTTCTCCGCATCCTGCCCCAGCAA CTGGACAGCATACAGGCTAACTCCGGGGGCTCCAAACCCACCAGCGCAGAGGGAGGCCTG ACCCCTGCAGCCGGGCCCGGGCCCCGGGACCAGGACAGTCGCTGGAAGCAGTACTTGGAG GACGAGAGGATTGCCCTCTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAGCGCAAC CGTGACTTCCTCCTCGCCCTGGAGAGAGATCGACTGAAATACGAGTCCCAGAAATCTACA TCCAGCAGTGTGGCCGTGGGAAATGACTTTGACTTTCCCTCTCCTGCCCCAGGAACCAGC GATGCCAACCCTGCTGTGTCCGAAGATGCCTTATTCAGGGACAAATTGAAACACATGGGA AAATCCACCCAGAGGAAGCTCTTTGAACTGGCCAGGGCTTTCTCAGAGAAGACCAAGATG AGGAAGTCGAAGAGGAAACACTTGCTGAAGCATCAGTCGCTGGGGGCTGCGGCATCAACA GCCAATCTCTTGGACGACGTGGAGGGCCACACCTGTGATGATGAGTTCCGGGGAAGGCGA CAGGAGGCGGCCAAGGTGGAGGAAGCGCTAAGGGAAGGACAGTAAGAGGTGCCAGCAGTT CCTCCTCACCGGCCACAATCTGAGCCAGGGGAGGCAGCCAGACAGCAAACTGGCCCCCAG CTGAAGAGCCCAGCTGCAGCCGGACAGATGGTGCTTGAGTTCTGAGGCCCAGTGATTCTC CGGCCACAGTCCAGCCCAGCCACTGCCACTGCCACTGCCACTGTCCAAGGGACTCAGAAC TTTGGAGTTGCATGCTGTGATTGGAGGAAGGACCTGGGGTGGGGTGGGGTGGGGCCACAG CCAACCAGGCCCTTTTGTAGCCAGGCTGTTCTATGGAGGATGAGTGGAAATGCGGGATCT ACCCTTTTCTTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGGAGCTCAACAACAGCCGGCCCGCTCGCCAGGTGCGCCGCCTCGAGTTCAACCAGGCC ATGGACGACTTCAAGACCATGTTCCCCAACATGGATTACGACATCATCGAGTGCGTGCTG CGGGCCAACAGCGGCGCCGTGGACGCCACCATCGACCAGCTGCTGCAGATGAACCTGGAG GCGGGTGGCGGCAGCGTCTACGAGGACAGCTCGGATTCGGAGGACAGCATCCCTCCGGAG ATTTTGGAAAGAACCTTGGAACCCGACAGCTCCGATGAGGAGCCCCCGCCTGTCTACTCC CCGCCAGCCTATCACATGCACATGTTCGACCGGCCTTACCCTCTGGCTCCGCCCACTCCC CCTCCCCGCATCGATGTGCTGGGCTCCGTGCCCCCTTCCAGCCAGAGGCGCTATCGGAAC TGGAACCCCCCACTGCTAGGCAACCTCCCTGAAGACTTTCTCCGCATCCTGCCCCAGCAA CTGGACAGCATACAGGCTAACTCCGGGGGCTCCAAACCCACCAGCGCAGAGGGAGGCCTG ACCCCTGCAGCCGGGCCCGGGCCCCGGGACCAGGACAGTCGCTGGAAGCAGTACTTGGAG GACGAGAGGATTGCCCTCTTCCTGCAGAACGAGGAGTTCATGAAGGAGCTGCAGCGCAAC CGTGACTTCCTCCTCGCCCTGGAGAGAGATCGACTGAAATACGAGTCCCAGAAATCTACA TCCAGCAGTGTGGCCGTGGGAAATGACTTTGACTTTCCCTCTCCTGCCCCAGGAACCAGC GATGCCAACCCTGCTGTGTCCGAAGATGCCTTATTCAGGGACAAATTGAAACACATGGGA AAATCCACCCAGAGGAAGCTCTTTGAACTGGCCAGGGCTTTCTCAGAGAAGACCAAGATG AGGAAGTCGAAGAGGAAACACTTGCTGAAGCATCAGTCGCTGGGGGCTGCGGCATCAACA GCCAATCTCTTGGACGACGTGGAGGGCCACACCTGTGATGATGAGTTCCGGGGAAGGCGA CAGGAGGCGGCCAAGGTGGAGGAAGCGCTAAGGGAAGGACAGTAAGAGGTGCCAGCAGTT CCTCCTCACCGGCCACAATCTGAGCCAGGGGAGGCAGCCAGACAGCAAACTGGCCCCCAG CTGAAGAGCCCAGCTGCAGCCGGACAGATGGTGCTTGAGTTCTGAGGCCCAGTGATTCTC CGGCCACAGTCCAGCCCAGCCACTGCCACTGCCACTGCCACTGTCCAAGGGACTCAGAAC TTTGGAGTTGCATGCTGTGATTGGAGGAAGGACCTGGGGTGGGGTGGGGTGGGGCCACAG CCAACCAGGCCCTTTTGTAGCCAGGCTGTTCTATGGAGGATGAGTGGAAATGCGGGATCT ACCCTTTTCTTG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 1-240, gnl|bosTau2|chr19 (2890827-2891066) | |
| 1-240, gnl|canFam2|chr9 (35907460-35907703) | |
| 1-240, gnl|danRer3|chr15 (35788401-35788635) | |
| 1-240, gnl|dasNov1|scaffold_9434 (6710-6470) | |
| 1-240, gnl|fr1|chrUn (193746806-193747035) | |
| 1-240, gnl|galGal2|chr19 (8287358-8287124) | |
| 1-240, gnl|hg17|chr17 (53317582-53317831) | |
| 1-240, gnl|Hg17|chr17 (53317834-53317589) | |
| 1-240, gnl|loxAfr1|scaffold_28632 (23963-23723) | |
| 1-240, gnl|mm7|chr11 (88240091-88239848) | |
| 1-240, gnl|Mm7|chr11 (88239843-88240082) | |
| 1-240, gnl|monDom2|scaffold_56 (5550557-5550323) | |
| 1-240, gnl|oryCun1|scaffold_204609 (722-964) | |
| 1-240, gnl|panTro1|chr19_random (39054612-39054861) | |
| 1-240, gnl|rheMac2|chr16 (42113352-42113607) | |
| 1-240, gnl|rn3|chr10 (76482663-76482420) | |
| 1-240, gnl|tetNig1|chr16 (8938645-8938876) | |
| 1-240, gnl|xenTro1|scaffold_580 (27946-28165) | |
| 493-688, gnl|bosTau2|chr19 (2901207-2901402) | |
| 493-688, gnl|canFam2|chr9 (35897239-35897401) | |
| 493-688, gnl|danRer3|chr15 (35778744-35778902) | |
| 493-688, gnl|echTel1|scaffold_207047 (425-269) | |
| 493-688, gnl|fr1|chrUn (193746065-193746205) | |
| 493-688, gnl|galGal2|chr19 (8289678-8289525) | |
| 493-688, gnl|hg17|chr17 (53305016-53305168) | |
| 493-688, gnl|Hg17|chr17 (53305218-53305023) | |
| 493-688, gnl|loxAfr1|scaffold_35117 (6829-6673) | |
| 493-688, gnl|mm7|chr11 (88253347-88253196) | |
| 493-688, gnl|Mm7|chr11 (88253144-88253339) | |
| 493-688, gnl|monDom2|scaffold_56 (5566446-5566303) | |
| 493-688, gnl|panTro1|chr19_random (39041902-39042054) | |
| 493-688, gnl|rheMac2|chr16 (42101157-42101309) | |
| 493-688, gnl|rn3|chr10 (76493756-76493605) | |
| 493-688, gnl|tetNig1|chr16 (8937949-8938084) | |
| 1137-1390, gnl|bosTau2|chr19 (2910969-2911205) | |
| 1137-1390, gnl|Hg17|chr17 (53295610-53295336) | |
| 1137-1390, gnl|Mm7|chr11 (88262540-88262809) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-240, gnl|bosTau2|chr19 (2890827-2891066) | |
| 1-240, gnl|canFam2|chr9 (35907460-35907703) | |
| 1-240, gnl|danRer3|chr15 (35788401-35788635) | |
| 1-240, gnl|dasNov1|scaffold_9434 (6710-6470) | |
| 1-240, gnl|fr1|chrUn (193746806-193747035) | |
| 1-240, gnl|galGal2|chr19 (8287358-8287124) | |
| 1-240, gnl|hg17|chr17 (53317582-53317831) | |
| 1-240, gnl|Hg17|chr17 (53317834-53317589) | |
| 1-240, gnl|loxAfr1|scaffold_28632 (23963-23723) | |
| 1-240, gnl|mm7|chr11 (88240091-88239848) | |
| 1-240, gnl|Mm7|chr11 (88239843-88240082) | |
| 1-240, gnl|monDom2|scaffold_56 (5550557-5550323) | |
| 1-240, gnl|oryCun1|scaffold_204609 (722-964) | |
| 1-240, gnl|panTro1|chr19_random (39054612-39054861) | |
| 1-240, gnl|rheMac2|chr16 (42113352-42113607) | |
| 1-240, gnl|rn3|chr10 (76482663-76482420) | |
| 1-240, gnl|tetNig1|chr16 (8938645-8938876) | |
| 1-240, gnl|xenTro1|scaffold_580 (27946-28165) | |
| 493-688, gnl|bosTau2|chr19 (2901207-2901402) | |
| 493-688, gnl|canFam2|chr9 (35897239-35897401) | |
| 493-688, gnl|danRer3|chr15 (35778744-35778902) | |
| 493-688, gnl|echTel1|scaffold_207047 (425-269) | |
| 493-688, gnl|fr1|chrUn (193746065-193746205) | |
| 493-688, gnl|galGal2|chr19 (8289678-8289525) | |
| 493-688, gnl|hg17|chr17 (53305016-53305168) | |
| 493-688, gnl|Hg17|chr17 (53305218-53305023) | |
| 493-688, gnl|loxAfr1|scaffold_35117 (6829-6673) | |
| 493-688, gnl|mm7|chr11 (88253347-88253196) | |
| 493-688, gnl|Mm7|chr11 (88253144-88253339) | |
| 493-688, gnl|monDom2|scaffold_56 (5566446-5566303) | |
| 493-688, gnl|panTro1|chr19_random (39041902-39042054) | |
| 493-688, gnl|rheMac2|chr16 (42101157-42101309) | |
| 493-688, gnl|rn3|chr10 (76493756-76493605) | |
| 493-688, gnl|tetNig1|chr16 (8937949-8938084) | |
| 1137-1390, gnl|bosTau2|chr19 (2910969-2911205) | |
| 1137-1390, gnl|Hg17|chr17 (53295610-53295336) | |
| 1137-1390, gnl|Mm7|chr11 (88262540-88262809) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| amn (0.417711) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| eje (0.395335) | |
| nlu (0.383362) | |
| mas (0.210305) | |
| fbs (0.175346) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| hyp (0.142837) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) |