Ss1.1-Utr1-UTR010045F01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGTCGGGGATCCGCGGCAGCCGCTGAGTCTGCTTCACCTCCGCCTCCTCTCAGAGCGC GAGCGCCTGAGGCCAGTTCGGGGGATGTGAGAGCCGAAGCCCCTAGGCTGCCAGGCACCG AGTCGGGTCGGAATTTGCCAGCCGGGCCCCGGCTCCAGCCCTGCAAGTTCGGAACGCACC CGAGTGACCCAGGCCCGACTGCGAGTTCGGGCGGAACGGCGGCCGCCGCACGCCCAGACT CGGCTTCTCTGCGCGCCCAGAAGATGAATCCGGCCTCGGCACCCCCTCCGCTCCCGCCAC CCGGGCAGCAAGTGATCCACGTCACTCAAGACCTAGACACGGACCTGGAAGCCCTCTTCA ACTCCGTGATGAATCCCAAGCCCAGCTCTTGGCGGAAGAAGATCCTGCCTGAGTCTTTCT TCAAGGAGCCTGACTCCGGCTCGCACTCGCGCCAGTCGAGTACCGACTCGTCCGGTGGCC ACCCCGGGCCCCGGCTGGCCGGTGGCGCCCAGCACGTCCGCTCGCATTCGTCGCCCGCTT CTCTGCAGCTGGGCACTGGCGCGGGTGCTGCTGGCAACCCGGCGCAGCAGCACGCGCACC TCCGCCAGCAGTCCTATGACGTGACCGACGAGCTGCCCCTGCCCCCCGGCTGGGAGATGA CCTTCACGGCCACTGGCCAGAGATACTTCCTCAATCACATAGAAAAAATCACCACATGGC AAGACCCTAGGAAGGCGATGAATCAGCCCCTGAATCATATGAACCTCCACCCAGCTGCCA CTTCCACACCAGCGCCCCAGAGGTCCATGGCCGTGTCTCAGCCGAATCTCGTGATGAATC ATCACCAGCAGCAGATGGCACCCAGTTCCCTGAGCCAGCAGAGCCACCCTCCTCAGAACC CGCCAGCGGGGCTCATGAATATGCCCAATGCGCTGACCACCCAACAGCAGCAGCAGCAGA AACTTCGGCTTCAGAGGATCCAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGTCGGGGATCCGCGGCAGCCGCTGAGTCTGCTTCACCTCCGCCTCCTCTCAGAGCGC GAGCGCCTGAGGCCAGTTCGGGGGATGTGAGAGCCGAAGCCCCTAGGCTGCCAGGCACCG AGTCGGGTCGGAATTTGCCAGCCGGGCCCCGGCTCCAGCCCTGCAAGTTCGGAACGCACC CGAGTGACCCAGGCCCGACTGCGAGTTCGGGCGGAACGGCGGCCGCCGCACGCCCAGACT CGGCTTCTCTGCGCGCCCAGAAGATGAATCCGGCCTCGGCACCCCCTCCGCTCCCGCCAC CCGGGCAGCAAGTGATCCACGTCACTCAAGACCTAGACACGGACCTGGAAGCCCTCTTCA ACTCCGTGATGAATCCCAAGCCCAGCTCTTGGCGGAAGAAGATCCTGCCTGAGTCTTTCT TCAAGGAGCCTGACTCCGGCTCGCACTCGCGCCAGTCGAGTACCGACTCGTCCGGTGGCC ACCCCGGGCCCCGGCTGGCCGGTGGCGCCCAGCACGTCCGCTCGCATTCGTCGCCCGCTT CTCTGCAGCTGGGCACTGGCGCGGGTGCTGCTGGCAACCCGGCGCAGCAGCACGCGCACC TCCGCCAGCAGTCCTATGACGTGACCGACGAGCTGCCCCTGCCCCCCGGCTGGGAGATGA CCTTCACGGCCACTGGCCAGAGATACTTCCTCAATCACATAGAAAAAATCACCACATGGC AAGACCCTAGGAAGGCGATGAATCAGCCCCTGAATCATATGAACCTCCACCCAGCTGCCA CTTCCACACCAGCGCCCCAGAGGTCCATGGCCGTGTCTCAGCCGAATCTCGTGATGAATC ATCACCAGCAGCAGATGGCACCCAGTTCCCTGAGCCAGCAGAGCCACCCTCCTCAGAACC CGCCAGCGGGGCTCATGAATATGCCCAATGCGCTGACCACCCAACAGCAGCAGCAGCAGA AACTTCGGCTTCAGAGGATCCAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 867-984, - strand, RNAz p=0.546063 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 867-984, - strand, RNAz p=0.546063 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 695-829, gnl|bosTau2|chr1 (75356407-75356273) | |
| 695-829, gnl|canFam2|chr23 (47383984-47384153) | |
| 695-829, gnl|danRer3|chr22 (48375457-48375278) | |
| 695-829, gnl|galGal2|chr9 (23251943-23251773) | |
| 695-829, gnl|hg17|chr3 (150773334-150773504) | |
| 695-829, gnl|Hg17|chr3 (150773485-150773351) | |
| 695-829, gnl|loxAfr1|scaffold_5080 (18632-18797) | |
| 695-829, gnl|mm7|chr3 (57628772-57628942) | |
| 695-829, gnl|Mm7|chr3 (57628923-57628789) | |
| 695-829, gnl|monDom2|scaffold_28 (21133799-21133960) | |
| 695-829, gnl|oryCun1|scaffold_169826 (25371-25203) | |
| 695-829, gnl|panTro1|chr2 (153799688-153799858) | |
| 695-829, gnl|rheMac2|chr2 (138222750-138222580) | |
| 695-829, gnl|rn3|chr2 (146708247-146708404) | |
| 695-829, gnl|xenTro1|scaffold_275 (183656-183488) | |
| 831-984, gnl|bosTau2|chr1 (75248501-75248345) | |
| 831-984, gnl|canFam2|chr23 (47356192-47356350) | |
| 831-984, gnl|dasNov1|scaffold_66240 (1602-1753) | |
| 831-984, gnl|echTel1|scaffold_261760 (7498-7332) | |
| 831-984, gnl|galGal2|chr9 (23266872-23266720) | |
| 831-984, gnl|hg17|chr3 (150742812-150742970) | |
| 831-984, gnl|Hg17|chr3 (150743023-150742867) | |
| 831-984, gnl|loxAfr1|scaffold_11709 (13303-13145) | |
| 831-984, gnl|mm7|chr3 (57604404-57604562) | |
| 831-984, gnl|Mm7|chr3 (57604612-57604459) | |
| 831-984, gnl|monDom2|scaffold_28 (21087286-21087439) | |
| 831-984, gnl|panTro1|chr2 (153768948-153769106) | |
| 831-984, gnl|rheMac2|chr2 (138251979-138251821) | |
| 831-984, gnl|rn3|chr2 (146684772-146684928) | |
| 831-984, gnl|xenTro1|scaffold_275 (193583-193431) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 695-829, gnl|bosTau2|chr1 (75356407-75356273) | |
| 695-829, gnl|canFam2|chr23 (47383984-47384153) | |
| 695-829, gnl|danRer3|chr22 (48375457-48375278) | |
| 695-829, gnl|galGal2|chr9 (23251943-23251773) | |
| 695-829, gnl|hg17|chr3 (150773334-150773504) | |
| 695-829, gnl|Hg17|chr3 (150773485-150773351) | |
| 695-829, gnl|loxAfr1|scaffold_5080 (18632-18797) | |
| 695-829, gnl|mm7|chr3 (57628772-57628942) | |
| 695-829, gnl|Mm7|chr3 (57628923-57628789) | |
| 695-829, gnl|monDom2|scaffold_28 (21133799-21133960) | |
| 695-829, gnl|oryCun1|scaffold_169826 (25371-25203) | |
| 695-829, gnl|panTro1|chr2 (153799688-153799858) | |
| 695-829, gnl|rheMac2|chr2 (138222750-138222580) | |
| 695-829, gnl|rn3|chr2 (146708247-146708404) | |
| 695-829, gnl|xenTro1|scaffold_275 (183656-183488) | |
| 831-984, gnl|bosTau2|chr1 (75248501-75248345) | |
| 831-984, gnl|canFam2|chr23 (47356192-47356350) | |
| 831-984, gnl|dasNov1|scaffold_66240 (1602-1753) | |
| 831-984, gnl|echTel1|scaffold_261760 (7498-7332) | |
| 831-984, gnl|galGal2|chr9 (23266872-23266720) | |
| 831-984, gnl|hg17|chr3 (150742812-150742970) | |
| 831-984, gnl|Hg17|chr3 (150743023-150742867) | |
| 831-984, gnl|loxAfr1|scaffold_11709 (13303-13145) | |
| 831-984, gnl|mm7|chr3 (57604404-57604562) | |
| 831-984, gnl|Mm7|chr3 (57604612-57604459) | |
| 831-984, gnl|monDom2|scaffold_28 (21087286-21087439) | |
| 831-984, gnl|panTro1|chr2 (153768948-153769106) | |
| 831-984, gnl|rheMac2|chr2 (138251979-138251821) | |
| 831-984, gnl|rn3|chr2 (146684772-146684928) | |
| 831-984, gnl|xenTro1|scaffold_275 (193583-193431) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.133672) |