Ss1.1-Utr1-UTR010045F02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGGTCTGTGGAGGGGGCTGACGGCCGGCAGCTGGGGCTGCTGGCCACAGCCGGCAGAG CCGGGCAGCATGTCGCGGAGCCACGGTTAGTCTCGCGCGGCGGTCGTGAGCGCGTGAGTT ATCCAGTGCGGTCCCGCGCGCAGGTAGGCGGCAGCAGCAGCAGAAATAGTAGCGCCGCCT GAGAGAACCATGAAGCATTACGAGGTGGAGATTCTGGATGCAAAGACCCGGGAGAAGCTG TGCTTCCTGGACAAGGTGGAGCCCCAAGCCACCATTGCCGAGATCAAGAACCTTTTCACC AAGAGTCATCCGCAGTGGTACCCTGCCCGCCAGTCCCTCCGCCTGGACCCCAAGGGCAAG TCCCTGAAGGATGAGGACGTTCTGCAGAAGCTGCCTGTGGGCACCACGGCCACACTCTAC TTCCGGGACCTGGGGGCCCAGATCAGCTGGGTAACGGTCTTCCTGACAGAGTACGCGGGT CCCCTTTTCATCTATTTGCTCTTCTACTTCCGGGTGCCCTTCATTTATGGCCACAAATAT GACTTCACGTCCAGTCGGCATACGGTGGTGCACCTCGCCTGCATCTGCCACTCATTCCAC TACATCAAGCGCCTGTTGGAGACGCTCTTCGTGCATCGCTTCTCCCATGGCACTATGCCC TTGCGCAACATCTTCAAGAACTGCACCTACTACTGGGGCTTTGCTGCATGGATGGCCTAT TACATCAACCACCCTCTCTACACACCCCCAACCTATGGAGCTCAGCAGGTTAAATTGGCA CTCGCCATCTTTGTGATCTGCCAGCTTGGCAACTTCTCCATCCACATGGCCCTGCGGGAC CTGCGGCCAGCAGGGTCCAAGACCAGGAAGATCCCATACCCCACCAAGAACCCCTTCACA TGGCTTTTCCTGCTGGTGTCCTGCCCCAACTACACATACGAGGTGGGGTCCTGGATTGGC TTTGCCATCATGACACAGTGTCTCCCAGTGGCCCTCTTCTCCCTGGTGGGCTTCACCCAG ATGACCATCTGGGCCAAGGGCAAGCACCGCAGCTACCTGAAGGAGTTCCGAGACTACCCG CCCCTACGCATGCCCATCATCCCCTTCCTGCTCTGAGCGGCTCCCCCCACTCAGGCTCAG GCAAGCTGGGCTCTGTCCCCCTGCCCCGCCCCAGTGTCATCCTGGGGGAGGGGTGGGAAC TGTTGCTCTCTAGTGCCTGGAATAAAACCTGCCTGCCCAGCTGGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGGTCTGTGGAGGGGGCTGACGGCCGGCAGCTGGGGCTGCTGGCCACAGCCGGCAGAG CCGGGCAGCATGTCGCGGAGCCACGGTTAGTCTCGCGCGGCGGTCGTGAGCGCGTGAGTT ATCCAGTGCGGTCCCGCGCGCAGGTAGGCGGCAGCAGCAGCAGAAATAGTAGCGCCGCCT GAGAGAACCATGAAGCATTACGAGGTGGAGATTCTGGATGCAAAGACCCGGGAGAAGCTG TGCTTCCTGGACAAGGTGGAGCCCCAAGCCACCATTGCCGAGATCAAGAACCTTTTCACC AAGAGTCATCCGCAGTGGTACCCTGCCCGCCAGTCCCTCCGCCTGGACCCCAAGGGCAAG TCCCTGAAGGATGAGGACGTTCTGCAGAAGCTGCCTGTGGGCACCACGGCCACACTCTAC TTCCGGGACCTGGGGGCCCAGATCAGCTGGGTAACGGTCTTCCTGACAGAGTACGCGGGT CCCCTTTTCATCTATTTGCTCTTCTACTTCCGGGTGCCCTTCATTTATGGCCACAAATAT GACTTCACGTCCAGTCGGCATACGGTGGTGCACCTCGCCTGCATCTGCCACTCATTCCAC TACATCAAGCGCCTGTTGGAGACGCTCTTCGTGCATCGCTTCTCCCATGGCACTATGCCC TTGCGCAACATCTTCAAGAACTGCACCTACTACTGGGGCTTTGCTGCATGGATGGCCTAT TACATCAACCACCCTCTCTACACACCCCCAACCTATGGAGCTCAGCAGGTTAAATTGGCA CTCGCCATCTTTGTGATCTGCCAGCTTGGCAACTTCTCCATCCACATGGCCCTGCGGGAC CTGCGGCCAGCAGGGTCCAAGACCAGGAAGATCCCATACCCCACCAAGAACCCCTTCACA TGGCTTTTCCTGCTGGTGTCCTGCCCCAACTACACATACGAGGTGGGGTCCTGGATTGGC TTTGCCATCATGACACAGTGTCTCCCAGTGGCCCTCTTCTCCCTGGTGGGCTTCACCCAG ATGACCATCTGGGCCAAGGGCAAGCACCGCAGCTACCTGAAGGAGTTCCGAGACTACCCG CCCCTACGCATGCCCATCATCCCCTTCCTGCTCTGAGCGGCTCCCCCCACTCAGGCTCAG GCAAGCTGGGCTCTGTCCCCCTGCCCCGCCCCAGTGTCATCCTGGGGGAGGGGTGGGAAC TGTTGCTCTCTAGTGCCTGGAATAAAACCTGCCTGCCCAGCTGGAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1025-1141, - strand, RNAz p=0.744769 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1025-1141, - strand, RNAz p=0.744769 |
| Aligned organism(s): 62 entry(ies) | More info |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
| 353-458, gnl|bosTau2|chr7 (7328914-7328809) | |
| 353-458, gnl|canFam2|chr20 (51098357-51098238) | |
| 353-458, gnl|danRer3|chr10 (20554172-20554062) | |
| 353-458, gnl|echTel1|scaffold_258376 (732-606) | |
| 353-458, gnl|fr1|chrUn (263715618-263715737) | |
| 353-458, gnl|hg17|chr19 (14535611-14535730) | |
| 353-458, gnl|Hg17|chr19 (14535612-14535717) | |
| 353-458, gnl|mm7|chr8 (82151753-82151634) | |
| 353-458, gnl|Mm7|chr8 (82151750-82151645) | |
| 353-458, gnl|monDom2|scaffold_85 (6055075-6055195) | |
| 353-458, gnl|panTro1|chr20 (15174630-15174749) | |
| 353-458, gnl|rheMac2|chr19 (14276349-14276468) | |
| 353-458, gnl|rn3|chr19 (26262445-26262564) | |
| 353-458, gnl|tetNig1|chr3 (10922257-10922146) | |
| 353-458, gnl|xenTro1|scaffold_115 (429589-429472) | |
| 573-678, gnl|bosTau2|chr7 (7328540-7328435) | |
| 573-678, gnl|canFam2|chr20 (51097870-51097973) | |
| 573-678, gnl|danRer3|chr10 (20547452-20547550) | |
| 573-678, gnl|echTel1|scaffold_200314 (4188-4085) | |
| 573-678, gnl|fr1|chrUn (263716445-263716342) | |
| 573-678, gnl|Hg17|chr19 (14535994-14536299) | |
| 573-678, gnl|hg17|chr4 (125742066-125742168) | |
| 573-678, gnl|mm7|chr17 (72159245-72159348) | |
| 573-678, gnl|Mm7|chr8 (82151373-82151268) | |
| 573-678, gnl|monDom2|scaffold_85 (6056008-6055906) | |
| 573-678, gnl|panTro1|chr3 (142588132-142588234) | |
| 573-678, gnl|rheMac2|chr5 (116783443-116783546) | |
| 573-678, gnl|rn3|chr1 (41486429-41486532) | |
| 573-678, gnl|tetNig1|chr18 (1871283-1871386) | |
| 851-962, gnl|bosTau2|chr7 (7327870-7327758) | |
| 851-962, gnl|canFam2|chr20 (51097301-51097198) | |
| 851-962, gnl|canFam2|chr20 (51097208-51097280) | |
| 851-962, gnl|danRer3|chr10 (20541721-20541626) | |
| 851-962, gnl|danRer3|chr10 (20541628-20541700) | |
| 851-962, gnl|dasNov1|scaffold_63549 (354-279) | |
| 851-962, gnl|dasNov1|scaffold_63549 (281-354) | |
| 851-962, gnl|echTel1|scaffold_200314 (4364-4452) | |
| 851-962, gnl|echTel1|scaffold_200314 (4457-4384) | |
| 851-962, gnl|fr1|chrUn (263717049-263717148) | |
| 851-962, gnl|fr1|chrUn (263717142-263717070) | |
| 851-962, gnl|hg17|chr19 (14537012-14537115) | |
| 851-962, gnl|Hg17|chr19 (14537012-14537139) | |
| 851-962, gnl|hg17|chr4 (88228169-88228242) | |
| 851-962, gnl|loxAfr1|scaffold_23258 (18129-18230) | |
| 851-962, gnl|loxAfr1|scaffold_23258 (18228-18155) | |
| 851-962, gnl|mm7|chr8 (82150751-82150648) | |
| 851-962, gnl|mm7|chr8 (82150657-82150730) | |
| 851-962, gnl|Mm7|chr8 (82150750-82150643) | |
| 851-962, gnl|monDom2|scaffold_1 (129226811-129226744) | |
| 851-962, gnl|monDom2|scaffold_85 (6058300-6058403) | |
| 851-962, gnl|panTro1|chr20 (15176031-15176134) | |
| 851-962, gnl|panTro1|chr20 (15176125-15176052) | |
| 851-962, gnl|rheMac2|chr19 (14277717-14277820) | |
| 851-962, gnl|rheMac2|chr19 (14277811-14277738) | |
| 851-962, gnl|rn3|chr1 (41486160-41486233) | |
| 851-962, gnl|rn3|chr19 (26263506-26263609) | |
| 851-962, gnl|tetNig1|chr18 (1870696-1870768) | |
| 851-962, gnl|tetNig1|chr3 (10920377-10920282) | |
| 851-962, gnl|xenTro1|scaffold_115 (422837-422734) | |
| 986-1245, gnl|bosTau2|chr7 (7327347-7327095) | |
| 986-1245, gnl|Hg17|chr19 (14537553-14537792) | |
| 986-1245, gnl|Mm7|chr8 (82150365-82150121) |
| Aligned organism(s): 62 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 353-458, gnl|bosTau2|chr7 (7328914-7328809) | |
| 353-458, gnl|canFam2|chr20 (51098357-51098238) | |
| 353-458, gnl|danRer3|chr10 (20554172-20554062) | |
| 353-458, gnl|echTel1|scaffold_258376 (732-606) | |
| 353-458, gnl|fr1|chrUn (263715618-263715737) | |
| 353-458, gnl|hg17|chr19 (14535611-14535730) | |
| 353-458, gnl|Hg17|chr19 (14535612-14535717) | |
| 353-458, gnl|mm7|chr8 (82151753-82151634) | |
| 353-458, gnl|Mm7|chr8 (82151750-82151645) | |
| 353-458, gnl|monDom2|scaffold_85 (6055075-6055195) | |
| 353-458, gnl|panTro1|chr20 (15174630-15174749) | |
| 353-458, gnl|rheMac2|chr19 (14276349-14276468) | |
| 353-458, gnl|rn3|chr19 (26262445-26262564) | |
| 353-458, gnl|tetNig1|chr3 (10922257-10922146) | |
| 353-458, gnl|xenTro1|scaffold_115 (429589-429472) | |
| 573-678, gnl|bosTau2|chr7 (7328540-7328435) | |
| 573-678, gnl|canFam2|chr20 (51097870-51097973) | |
| 573-678, gnl|danRer3|chr10 (20547452-20547550) | |
| 573-678, gnl|echTel1|scaffold_200314 (4188-4085) | |
| 573-678, gnl|fr1|chrUn (263716445-263716342) | |
| 573-678, gnl|Hg17|chr19 (14535994-14536299) | |
| 573-678, gnl|hg17|chr4 (125742066-125742168) | |
| 573-678, gnl|mm7|chr17 (72159245-72159348) | |
| 573-678, gnl|Mm7|chr8 (82151373-82151268) | |
| 573-678, gnl|monDom2|scaffold_85 (6056008-6055906) | |
| 573-678, gnl|panTro1|chr3 (142588132-142588234) | |
| 573-678, gnl|rheMac2|chr5 (116783443-116783546) | |
| 573-678, gnl|rn3|chr1 (41486429-41486532) | |
| 573-678, gnl|tetNig1|chr18 (1871283-1871386) | |
| 851-962, gnl|bosTau2|chr7 (7327870-7327758) | |
| 851-962, gnl|canFam2|chr20 (51097301-51097198) | |
| 851-962, gnl|canFam2|chr20 (51097208-51097280) | |
| 851-962, gnl|danRer3|chr10 (20541721-20541626) | |
| 851-962, gnl|danRer3|chr10 (20541628-20541700) | |
| 851-962, gnl|dasNov1|scaffold_63549 (354-279) | |
| 851-962, gnl|dasNov1|scaffold_63549 (281-354) | |
| 851-962, gnl|echTel1|scaffold_200314 (4364-4452) | |
| 851-962, gnl|echTel1|scaffold_200314 (4457-4384) | |
| 851-962, gnl|fr1|chrUn (263717049-263717148) | |
| 851-962, gnl|fr1|chrUn (263717142-263717070) | |
| 851-962, gnl|hg17|chr19 (14537012-14537115) | |
| 851-962, gnl|Hg17|chr19 (14537012-14537139) | |
| 851-962, gnl|hg17|chr4 (88228169-88228242) | |
| 851-962, gnl|loxAfr1|scaffold_23258 (18129-18230) | |
| 851-962, gnl|loxAfr1|scaffold_23258 (18228-18155) | |
| 851-962, gnl|mm7|chr8 (82150751-82150648) | |
| 851-962, gnl|mm7|chr8 (82150657-82150730) | |
| 851-962, gnl|Mm7|chr8 (82150750-82150643) | |
| 851-962, gnl|monDom2|scaffold_1 (129226811-129226744) | |
| 851-962, gnl|monDom2|scaffold_85 (6058300-6058403) | |
| 851-962, gnl|panTro1|chr20 (15176031-15176134) | |
| 851-962, gnl|panTro1|chr20 (15176125-15176052) | |
| 851-962, gnl|rheMac2|chr19 (14277717-14277820) | |
| 851-962, gnl|rheMac2|chr19 (14277811-14277738) | |
| 851-962, gnl|rn3|chr1 (41486160-41486233) | |
| 851-962, gnl|rn3|chr19 (26263506-26263609) | |
| 851-962, gnl|tetNig1|chr18 (1870696-1870768) | |
| 851-962, gnl|tetNig1|chr3 (10920377-10920282) | |
| 851-962, gnl|xenTro1|scaffold_115 (422837-422734) | |
| 986-1245, gnl|bosTau2|chr7 (7327347-7327095) | |
| 986-1245, gnl|Hg17|chr19 (14537553-14537792) | |
| 986-1245, gnl|Mm7|chr8 (82150365-82150121) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| ece (0.45861) | |
| nca (0.410621) | |
| cov (0.396458) | |
| nep (0.36785) | |
| ton (0.351) | |
| med (0.348756) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ese (0.253004) | |
| eru (0.240096) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eje (0.0988338) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.45861) | |
| nca (0.410621) | |
| cov (0.396458) | |
| nep (0.36785) | |
| ton (0.351) | |
| med (0.348756) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| pla (0.267344) | |
| ese (0.253004) | |
| eru (0.240096) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| nlu (0.191681) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cki (0.165235) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eje (0.0988338) |