Non-Coding RNA Search

Ss1.1-Utr1-UTR010045F11.5

Sequence:


               
               GAGCTTCAGCTGCTGCCGCCGGCTTCAGCGCACACTGCCACCGCTGCCCACCATCCGCCA
GCATGTCCTCTGCTCACTTCAACCGAGGCCCCGCCTACGGGCTGTCGGCTGAGGTCAAGA
ACAAGCTGGCCCAGAAGTATGACCACCAGCAGGAGCAGGAGCTTCGAGAGTGGATCGAGG
GGGTGACAGGGCGCCGCATCGGCAACAACTTCATGGACGGCCTCAAAGATGGCATCATTC
TTTGCGAGTTCATCAATAAGCTCCAGCCAGGCTCCGTGAAGAAGGTCAATGAGTCCACCC
AGAACTGGCACCAGCTGGAGAACATTGGCAACTTCATCAAGGCCATCACCAAGTATGGGG
TGAAGCCCCACGACATCTTTGAAGCCAACGACCTGTTCGAGAACACCAACCACACACAAG
TGCAGTCCACGCTCCTGGCCCTGGCCAGCATGGCCAAGACGAAAGGGAACAAGGTGAACG
TGGGAGTGAAATATGCGGAGAAGCAGGAACGGAAATTTGAGCCGGAGAAGCTAAGAGAAG
GGCGGAACATCATTGGGCTGCAGATGGGCACCAACAAGTTTGCCAGTCAGCAGGGCATGA
CAGCCTATGGCACCCGGCGCCACCTCTACGACCCCAAGCTGGGCACGGACCAGCCCCTGG
ACCAGGCTACCATCAGCCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCTGGCATGA
CCGCTCCCGGGACCAAGCGGCAGATCTTCGAGCCGGGGCTGGGCATGGAGCACTGTGACA
CGCTCAACGTCAGCCTACAGATGGGCAGCAACAAGGGGGCCTCGCAGCGGGGCATGACGG
TGTATGGACTGCCCCGCCAAGTCTACGATCCCAAGTACTGCCTGACGCCTGAGTACCCGG
AGCTGGGCGAACCTGCCCACAACCACCACCCGCACAACTACTACAACTCTGCCTAGGGTG
CTGGGCCTCCCACCTTCCCCCAGGGAGGCTGGCTGCTGCTCTTGGTGGGCCTGGCCTGGC
CTGCTGACCCCCTCCCCCTGCATGGCTCCTCCAGCCCCCTGGCACCTGCCTACAGGGTTA
GTGTTTGTGGGGAGCAGACTGGGGAACCTGTGGGGGGGAAGGGGGCACCTCCCTGGAGCA
CTACGAGGTCCAACATGGAGCTGGGTGTTCCCAACAGCACCCAAAGGACGCACTGAGCAA
AGCTACCCCGCTGTCCCCCACTCCCCACAGGTGGGTCCCCCCCCCGGACCAGAAGCCCCC
CCAAGCGAAGCCCCCAGAGCCCAGGCTCGCGCCTCCCCCCACCCCATTCCCGCAGTGGGA
GCAAACTGCATGCCCAGAGACCCAGAGGACACACGCGGTTTGGTTTGCAGCTGGCCTATG
GGATGTGACAGTGGCGTTTGTAACGCGAGCACTTTCTTTTTCTACTTCACTGGAGCACAA
TAAATAGCTGTAAAATCAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTTCAGCTGCTGCCGCCGGCTTCAGCGCACACTGCCACCGCTGCCCACCATCCGCCA
GCATGTCCTCTGCTCACTTCAACCGAGGCCCCGCCTACGGGCTGTCGGCTGAGGTCAAGA
ACAAGCTGGCCCAGAAGTATGACCACCAGCAGGAGCAGGAGCTTCGAGAGTGGATCGAGG
GGGTGACAGGGCGCCGCATCGGCAACAACTTCATGGACGGCCTCAAAGATGGCATCATTC
TTTGCGAGTTCATCAATAAGCTCCAGCCAGGCTCCGTGAAGAAGGTCAATGAGTCCACCC
AGAACTGGCACCAGCTGGAGAACATTGGCAACTTCATCAAGGCCATCACCAAGTATGGGG
TGAAGCCCCACGACATCTTTGAAGCCAACGACCTGTTCGAGAACACCAACCACACACAAG
TGCAGTCCACGCTCCTGGCCCTGGCCAGCATGGCCAAGACGAAAGGGAACAAGGTGAACG
TGGGAGTGAAATATGCGGAGAAGCAGGAACGGAAATTTGAGCCGGAGAAGCTAAGAGAAG
GGCGGAACATCATTGGGCTGCAGATGGGCACCAACAAGTTTGCCAGTCAGCAGGGCATGA
CAGCCTATGGCACCCGGCGCCACCTCTACGACCCCAAGCTGGGCACGGACCAGCCCCTGG
ACCAGGCTACCATCAGCCTGCAGATGGGCACCAACAAGGGAGCCAGCCAGGCTGGCATGA
CCGCTCCCGGGACCAAGCGGCAGATCTTCGAGCCGGGGCTGGGCATGGAGCACTGTGACA
CGCTCAACGTCAGCCTACAGATGGGCAGCAACAAGGGGGCCTCGCAGCGGGGCATGACGG
TGTATGGACTGCCCCGCCAAGTCTACGATCCCAAGTACTGCCTGACGCCTGAGTACCCGG
AGCTGGGCGAACCTGCCCACAACCACCACCCGCACAACTACTACAACTCTGCCTAGGGTG
CTGGGCCTCCCACCTTCCCCCAGGGAGGCTGGCTGCTGCTCTTGGTGGGCCTGGCCTGGC
CTGCTGACCCCCTCCCCCTGCATGGCTCCTCCAGCCCCCTGGCACCTGCCTACAGGGTTA
GTGTTTGTGGGGAGCAGACTGGGGAACCTGTGGGGGGGAAGGGGGCACCTCCCTGGAGCA
CTACGAGGTCCAACATGGAGCTGGGTGTTCCCAACAGCACCCAAAGGACGCACTGAGCAA
AGCTACCCCGCTGTCCCCCACTCCCCACAGGTGGGTCCCCCCCCCGGACCAGAAGCCCCC
CCAAGCGAAGCCCCCAGAGCCCAGGCTCGCGCCTCCCCCCACCCCATTCCCGCAGTGGGA
GCAAACTGCATGCCCAGAGACCCAGAGGACACACGCGGTTTGGTTTGCAGCTGGCCTATG
GGATGTGACAGTGGCGTTTGTAACGCGAGCACTTTCTTTTTCTACTTCACTGGAGCACAA
TAAATAGCTGTAAAATCAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               CLP1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               CLP1_PIG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-882, gnl|bosTau2|chr16 (5073930-5073101)
               

               
               55-882, gnl|Hg17|chr6 (111286126-111286946)
               

               
               55-882, gnl|Mm7|chr19 (34324983-34325814)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-882, gnl|bosTau2|chr16 (5073930-5073101)
               

               
               55-882, gnl|Hg17|chr6 (111286126-111286946)
               

               
               55-882, gnl|Mm7|chr19 (34324983-34325814)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pla (0.267344)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               cov (0.264306)
               

               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               nlu (0.191681)
               

               
               nco (0.161734)
               

               
               pty (0.142714)
               

               
               lyg (0.133103)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               eje (0.0988338)

	55-882, gnl\|bosTau2\|chr16 (5073930-5073101)
	55-882, gnl\|Hg17\|chr6 (111286126-111286946)
	55-882, gnl\|Mm7\|chr19 (34324983-34325814)

	pla (0.267344)
	cov (0.264306)
	nms (0.213858)
	mas (0.210305)
	nlu (0.191681)
	nco (0.161734)
	pty (0.142714)
	lyg (0.133103)
	ese (0.126502)
	clu (0.119646)
	eje (0.0988338)