Ss1.1-Utr1-UTR010045G04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCCGGCGCCCCGCTTGTCGGAGGCGGGGCGGCAGTTGGGGGAAGTGTGCCATGAGGCTT CGGGCGCGCTTTCTGCCAACCGTGAGCGAGCTTTTGGCGCGGGGCTCCGAGTGTAGCTGT GTCAACGTGTTATGATGCCGTCTCGTACCAACCTGACTACTGGAATCCCCAGTAGTAAAG TGAAATACTCAAGGCTCTCCAGTACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAA GCCCTCCTAAGATCCCATATAAGGCCATTGCGCTTGCTACAGTGCTGTTTTTGATTGGCG CCTTTCTCATTATCATAGGCTCCCTCCTGCTGGCAGGCTATATCAGCAAAGGGGGGGCAG ACCGGGCTGTTCCTGTCCTGATCATTGGCATCCTGGTGTTCCTGCCAGGATTCTACCACC TGCGCATTGCCTACTATGCATCCAAAGGCTACCGGGGTTACTCTTATGATGACATTCCAG ACTTTGATGACTGACATCCACCTCAGCCCTGAGGAGAAGAGTCACAGATGAGACTGAGCC TGACTTTATGACATTGAGCAGAAACTATGTCTAGGAACTAAGGATTTCTGCAACTGGCAG ATGTTTAACAAAACAGTGGCCAGATTTTAATGGGTCTGTCCTAAAGATGTTAATTGAATT TACAACTAGCTCATTAGGATAGTCTCTAATTTTCATCTCCTGGCCCTGAGACAAATTTTT CCATATGCATATGTATCACGAAGAGTAGCAGTGTTAATTGCATGAGAAAGCGGGAGGTTA TTCTTCAGCTTTTGCTGCCACCATCATTTTTAGAGTTAAGCATTTCTTTCAACTAGTCCT CAATGTCAGTATGTTCTTGTGGCAAATGGAAGAATGCAGTATGTCAGATTTCTTGTTACT AAGTAATTTCTTTTGAAAATAGATCTAAGTGTCTTATCCCCATACTCATCATGGCAAAAT CAAATATCAGTGTGGGTGCATCTGTAATTTTTTTACTTGATTTTTTTTTTTAACTCAATG CATTTTTTTTTTAACTCAATGAATTTATCACTTTACTTGCTTTCTTATTAACAGCAACTA GGAATTTTTAAAACCTCAGACCAAAGTTTCAAAATGTAAACACTTTGTTCACCAATCCTT GGCCCCATCTCTGATGTGGTTCACTGATAGCTTGGCCAGTGTATAGTTCGGATCATTCTG TCCTTTGTAGATAAAGATGTTCTGTATATCATACCTTTAAGGACTGGATTTTTGGCTGTT TCCTAAGGGAAAATATAGATAAGTGGTTATTATTTAGAGTTTATAACCTGACGTTAGCAT CTTGTGTTATGATGACATTGTGCTGAAGATTGTAAGCATTGGCCTGGATCTCTAGAGGAT TAGACTGCCTTAGTTTGATTGGTTTCCTAGCTTGCAAAAAGTGACTAATATTCAGAAGAA ATTAAAATGTCGAAATCTAAATCCTAGACTTTTAACATACTTCAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCCGGCGCCCCGCTTGTCGGAGGCGGGGCGGCAGTTGGGGGAAGTGTGCCATGAGGCTT CGGGCGCGCTTTCTGCCAACCGTGAGCGAGCTTTTGGCGCGGGGCTCCGAGTGTAGCTGT GTCAACGTGTTATGATGCCGTCTCGTACCAACCTGACTACTGGAATCCCCAGTAGTAAAG TGAAATACTCAAGGCTCTCCAGTACAGACGATGGCTACATTGACCTTCAGTTTAAGAAAA GCCCTCCTAAGATCCCATATAAGGCCATTGCGCTTGCTACAGTGCTGTTTTTGATTGGCG CCTTTCTCATTATCATAGGCTCCCTCCTGCTGGCAGGCTATATCAGCAAAGGGGGGGCAG ACCGGGCTGTTCCTGTCCTGATCATTGGCATCCTGGTGTTCCTGCCAGGATTCTACCACC TGCGCATTGCCTACTATGCATCCAAAGGCTACCGGGGTTACTCTTATGATGACATTCCAG ACTTTGATGACTGACATCCACCTCAGCCCTGAGGAGAAGAGTCACAGATGAGACTGAGCC TGACTTTATGACATTGAGCAGAAACTATGTCTAGGAACTAAGGATTTCTGCAACTGGCAG ATGTTTAACAAAACAGTGGCCAGATTTTAATGGGTCTGTCCTAAAGATGTTAATTGAATT TACAACTAGCTCATTAGGATAGTCTCTAATTTTCATCTCCTGGCCCTGAGACAAATTTTT CCATATGCATATGTATCACGAAGAGTAGCAGTGTTAATTGCATGAGAAAGCGGGAGGTTA TTCTTCAGCTTTTGCTGCCACCATCATTTTTAGAGTTAAGCATTTCTTTCAACTAGTCCT CAATGTCAGTATGTTCTTGTGGCAAATGGAAGAATGCAGTATGTCAGATTTCTTGTTACT AAGTAATTTCTTTTGAAAATAGATCTAAGTGTCTTATCCCCATACTCATCATGGCAAAAT CAAATATCAGTGTGGGTGCATCTGTAATTTTTTTACTTGATTTTTTTTTTTAACTCAATG CATTTTTTTTTTAACTCAATGAATTTATCACTTTACTTGCTTTCTTATTAACAGCAACTA GGAATTTTTAAAACCTCAGACCAAAGTTTCAAAATGTAAACACTTTGTTCACCAATCCTT GGCCCCATCTCTGATGTGGTTCACTGATAGCTTGGCCAGTGTATAGTTCGGATCATTCTG TCCTTTGTAGATAAAGATGTTCTGTATATCATACCTTTAAGGACTGGATTTTTGGCTGTT TCCTAAGGGAAAATATAGATAAGTGGTTATTATTTAGAGTTTATAACCTGACGTTAGCAT CTTGTGTTATGATGACATTGTGCTGAAGATTGTAAGCATTGGCCTGGATCTCTAGAGGAT TAGACTGCCTTAGTTTGATTGGTTTCCTAGCTTGCAAAAAGTGACTAATATTCAGAAGAA ATTAAAATGTCGAAATCTAAATCCTAGACTTTTAACATACTTCAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 112-230, - strand, RNAz p=0.624927 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 112-230, - strand, RNAz p=0.624927 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 112-235, gnl|bosTau2|chr13 (30456104-30456227) | |
| 112-235, gnl|canFam2|chr24 (19486459-19486377) | |
| 112-235, gnl|canFam2|chr24 (19486477-19486357) | |
| 112-235, gnl|danRer3|chr10 (8313961-8314081) | |
| 112-235, gnl|dasNov1|scaffold_36969 (2330-2450) | |
| 112-235, gnl|dasNov1|scaffold_6498 (15779-15697) | |
| 112-235, gnl|echTel1|scaffold_282492 (43144-43062) | |
| 112-235, gnl|echTel1|scaffold_307749 (368-249) | |
| 112-235, gnl|fr1|chrUn (182340260-182340151) | |
| 112-235, gnl|galGal2|chr22 (337751-337628) | |
| 112-235, gnl|hg17|chr12 (38219824-38219906) | |
| 112-235, gnl|hg17|chr20 (5037961-5038081) | |
| 112-235, gnl|Hg17|chr20 (5038096-5037973) | |
| 112-235, gnl|loxAfr1|scaffold_55182 (26229-26291) | |
| 112-235, gnl|loxAfr1|scaffold_9740 (38167-38287) | |
| 112-235, gnl|mm7|chr2 (131986810-131986892) | |
| 112-235, gnl|mm7|chr2 (131986792-131986912) | |
| 112-235, gnl|Mm7|chr2 (131986925-131986804) | |
| 112-235, gnl|monDom2|scaffold_1 (95116155-95116280) | |
| 112-235, gnl|oryCun1|scaffold_203628 (32333-32251) | |
| 112-235, gnl|oryCun1|scaffold_203628 (32352-32231) | |
| 112-235, gnl|panTro1|chr10 (38792922-38793004) | |
| 112-235, gnl|panTro1|chr21 (5002849-5002969) | |
| 112-235, gnl|rheMac2|chr10 (38446969-38447089) | |
| 112-235, gnl|rheMac2|chr11 (36387792-36387874) | |
| 112-235, gnl|rn3|chr3 (119910710-119910792) | |
| 112-235, gnl|rn3|chr3 (119910707-119910812) | |
| 112-235, gnl|tetNig1|chr4 (5952138-5952218) | |
| 112-235, gnl|xenTro1|scaffold_110 (809130-809236) | |
| 353-947, gnl|bosTau2|chr13 (30461000-30461607) | |
| 353-947, gnl|Hg17|chr20 (5029578-5029011) | |
| 353-947, gnl|Mm7|chr2 (131981480-131980901) | |
| 1052-1482, gnl|bosTau2|chr13 (30461676-30462108) | |
| 1052-1482, gnl|Hg17|chr20 (5028936-5028503) | |
| 1052-1482, gnl|Mm7|chr2 (131980796-131980096) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-235, gnl|bosTau2|chr13 (30456104-30456227) | |
| 112-235, gnl|canFam2|chr24 (19486459-19486377) | |
| 112-235, gnl|canFam2|chr24 (19486477-19486357) | |
| 112-235, gnl|danRer3|chr10 (8313961-8314081) | |
| 112-235, gnl|dasNov1|scaffold_36969 (2330-2450) | |
| 112-235, gnl|dasNov1|scaffold_6498 (15779-15697) | |
| 112-235, gnl|echTel1|scaffold_282492 (43144-43062) | |
| 112-235, gnl|echTel1|scaffold_307749 (368-249) | |
| 112-235, gnl|fr1|chrUn (182340260-182340151) | |
| 112-235, gnl|galGal2|chr22 (337751-337628) | |
| 112-235, gnl|hg17|chr12 (38219824-38219906) | |
| 112-235, gnl|hg17|chr20 (5037961-5038081) | |
| 112-235, gnl|Hg17|chr20 (5038096-5037973) | |
| 112-235, gnl|loxAfr1|scaffold_55182 (26229-26291) | |
| 112-235, gnl|loxAfr1|scaffold_9740 (38167-38287) | |
| 112-235, gnl|mm7|chr2 (131986810-131986892) | |
| 112-235, gnl|mm7|chr2 (131986792-131986912) | |
| 112-235, gnl|Mm7|chr2 (131986925-131986804) | |
| 112-235, gnl|monDom2|scaffold_1 (95116155-95116280) | |
| 112-235, gnl|oryCun1|scaffold_203628 (32333-32251) | |
| 112-235, gnl|oryCun1|scaffold_203628 (32352-32231) | |
| 112-235, gnl|panTro1|chr10 (38792922-38793004) | |
| 112-235, gnl|panTro1|chr21 (5002849-5002969) | |
| 112-235, gnl|rheMac2|chr10 (38446969-38447089) | |
| 112-235, gnl|rheMac2|chr11 (36387792-36387874) | |
| 112-235, gnl|rn3|chr3 (119910710-119910792) | |
| 112-235, gnl|rn3|chr3 (119910707-119910812) | |
| 112-235, gnl|tetNig1|chr4 (5952138-5952218) | |
| 112-235, gnl|xenTro1|scaffold_110 (809130-809236) | |
| 353-947, gnl|bosTau2|chr13 (30461000-30461607) | |
| 353-947, gnl|Hg17|chr20 (5029578-5029011) | |
| 353-947, gnl|Mm7|chr2 (131981480-131980901) | |
| 1052-1482, gnl|bosTau2|chr13 (30461676-30462108) | |
| 1052-1482, gnl|Hg17|chr20 (5028936-5028503) | |
| 1052-1482, gnl|Mm7|chr2 (131980796-131980096) |
| Expressed library(ies): 47 entry(ies) | More info |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
| lin (1.45603) | |
| sug (1.14562) | |
| pro (1.02407) | |
| eye (0.682012) | |
| lyg (0.665513) | |
| kid (0.648677) | |
| cty (0.5204) | |
| mga (0.480615) | |
| clu (0.478583) | |
| mgp (0.461361) | |
| cbl (0.45919) | |
| ece (0.45861) | |
| fat (0.442282) | |
| liv (0.438853) | |
| csk (0.422238) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| nje (0.33184) | |
| cje (0.330469) | |
| lun (0.300978) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ret (0.257467) | |
| thg (0.253582) | |
| tra (0.246184) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 47 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (1.45603) | |
| sug (1.14562) | |
| pro (1.02407) | |
| eye (0.682012) | |
| lyg (0.665513) | |
| kid (0.648677) | |
| cty (0.5204) | |
| mga (0.480615) | |
| clu (0.478583) | |
| mgp (0.461361) | |
| cbl (0.45919) | |
| ece (0.45861) | |
| fat (0.442282) | |
| liv (0.438853) | |
| csk (0.422238) | |
| sag (0.36543) | |
| mgm (0.360685) | |
| nje (0.33184) | |
| cje (0.330469) | |
| lun (0.300978) | |
| spl (0.286369) | |
| lnt (0.284616) | |
| ret (0.257467) | |
| thg (0.253582) | |
| tra (0.246184) | |
| pan (0.23596) | |
| ecc (0.23007) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| nco (0.161734) | |
| tbr (0.154178) | |
| cli (0.152812) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ova (0.129132) | |
| pgl (0.118483) | |
| spc (0.113366) | |
| eje (0.0988338) | |
| ldo (0.0970026) |