Ss1.1-Utr1-UTR010045G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGTGGCGGCAAATGGGCTTGGGCGGCTCCTTGGCGGGTGGCGGCGGTGGCCGTAGCGGT TCCTCCCGGCCCTGTTAATGTCGGGGCCAGGCCCGGGGAGGATGGCGCCCTAGAGCCCGG CCTTGCTGGGGCAGGGGCGGGAGGGGACGGGGTGGGCACCGGCCATGTCGGAGGTGACCC GGAGCCTGCTGCAGCGCTGGGGCGCCAGCTTCAGGCGAGGCGCCGACTTCGACTCCTGGG GCCAGCTGGTGGAGGCGATAGACGAATATCAGATATTAGCAAGACACCTACAAAAGGAGG CCCAAGCTCAACATAATAATTCTGAATTCACAGAAGAACAAAAGAAAACCATAGGCAAAA TTGCAACATGCTTGGAATTACGAAGTGCAGCTTTACAGTCCACACAGTCCCAAGAAGAAT TTAAACTGGAGGATCTGAAGAAGCTAGAACCAATCCTAAAGAACATTCTTACATATAACA AAGAATTCCCATTTGATGTTCAGCCTGTCCCCTTGAGAAGAATTTTAGCACCAGGTGAAG AAGAGAATTTGGAAATTGAAGACGACGAAGACGAGGGTGGTGCTGGAGCAGGGGCTCCGG ATTCCTTTCCTGCTAGAGTTCCTGGTACCTTATTACCAAGGTTGCCGTCTGAACCAGGAA TGACCTTACTCACTATCAGAATTGAGAAAATTGGCCTGAAAGATGCCGGGCAGTGCATTG ATCCCTATATCACAGTTAGTGTGAAAGATCTGAATGGCATAGATTTAACTCCTGTGCAGG ACACTCCTGTGGCTTCGAGAAAAGAAGATACATACGTTCATTTCAATGTGGACATTGAGC TCCAGAAGCATGTTGAAAAATTAACCAAAGGTGCAGCTATTTTCTTTGAATTCAAACACT ACAAGCCTAAAAAAAGGTTTACCAGCACCAAGTGTTTTGCTTTTATGGAGATGGATGAAA TCAGACCTGGGCCCATCGTCATAGAACTATACAAGAAACCCACTGACTTTAAAAGAAAGA AACTGCAGTTATTGACCAAGAAACCACTTTATCTTCATCTACATCAGACTTTGCACAAGG AATGATCCTGACATGAGTGACCTGGACGTCTGTGAATCTCCCCCTCAGTTGAGACTGTCA CAGCTCTGTGTAGCATAGTCACCCTTCAGCAGGCAGGACGCAGGCCGCACCCGGCAGCGA ACGCACGCCGGCGGTCCGTCACTCGGCTGCACCTCGGACCTCCAGCCCGGCCCTTCACTG ACCTGGAAGACTCCCTTGGACACAGGCTTAGCGTAGATCTCGAAATGTTTTCCCTTTTCT ATTATTGTGCAATTAACAGTCTCCTTTCTCATTTACCACTCCTCCTGCCCTGCTTCCTGG AACACTGTTGCGGGTGGGATGTGCTCACCTTCAGACTTAATACAGCAATAAGAATGTGCT AGAGTTTACACACCTGTTCACTTCTGCTCTGATATGCTCTTTGGTTTTTCAAGTTAATGT CACACTCTGGGTAGACGTGGGTAGCACAGTATGAAACTGCTTGAACTGGACCTCTTCATG CTGCCCCAGGCTGCTCCTCACAGACGCCTGGGTTCACCGGATCTCGTGTGTTCCTGCCTA GAAACAGCGTGCCTTGGCCAAGTCAGTGTCCCAGGTGGGAGTGTTCCCAGGTTGTAGCTG TGATTTTTCCAGACCCGATCGTTTTTCTGGAAGTGAGCATATTTTTAGTCTTGTTGATTA GTTTTCTCCTACACCATCTGGTTCCTCTTCCTGAGAGTCATTCTAGGGTTAATGATGGTG GAACCATCTCAGAATCATTACAGACTTTGGATGGGTTTATAATGTCTTCTAAATTACATA ATCTAAAAATAATCTGAGTCAGATGCTAACAAGTTACTGCAGGAATCACTGCTGTTTTTC TGACAACTGATTGTGAAACTGTAAAACCTGCATCCTCTTCTTGTAGTGATGAGGATGCAG GTCTGGAGATACTCTATTTTTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGTGGCGGCAAATGGGCTTGGGCGGCTCCTTGGCGGGTGGCGGCGGTGGCCGTAGCGGT TCCTCCCGGCCCTGTTAATGTCGGGGCCAGGCCCGGGGAGGATGGCGCCCTAGAGCCCGG CCTTGCTGGGGCAGGGGCGGGAGGGGACGGGGTGGGCACCGGCCATGTCGGAGGTGACCC GGAGCCTGCTGCAGCGCTGGGGCGCCAGCTTCAGGCGAGGCGCCGACTTCGACTCCTGGG GCCAGCTGGTGGAGGCGATAGACGAATATCAGATATTAGCAAGACACCTACAAAAGGAGG CCCAAGCTCAACATAATAATTCTGAATTCACAGAAGAACAAAAGAAAACCATAGGCAAAA TTGCAACATGCTTGGAATTACGAAGTGCAGCTTTACAGTCCACACAGTCCCAAGAAGAAT TTAAACTGGAGGATCTGAAGAAGCTAGAACCAATCCTAAAGAACATTCTTACATATAACA AAGAATTCCCATTTGATGTTCAGCCTGTCCCCTTGAGAAGAATTTTAGCACCAGGTGAAG AAGAGAATTTGGAAATTGAAGACGACGAAGACGAGGGTGGTGCTGGAGCAGGGGCTCCGG ATTCCTTTCCTGCTAGAGTTCCTGGTACCTTATTACCAAGGTTGCCGTCTGAACCAGGAA TGACCTTACTCACTATCAGAATTGAGAAAATTGGCCTGAAAGATGCCGGGCAGTGCATTG ATCCCTATATCACAGTTAGTGTGAAAGATCTGAATGGCATAGATTTAACTCCTGTGCAGG ACACTCCTGTGGCTTCGAGAAAAGAAGATACATACGTTCATTTCAATGTGGACATTGAGC TCCAGAAGCATGTTGAAAAATTAACCAAAGGTGCAGCTATTTTCTTTGAATTCAAACACT ACAAGCCTAAAAAAAGGTTTACCAGCACCAAGTGTTTTGCTTTTATGGAGATGGATGAAA TCAGACCTGGGCCCATCGTCATAGAACTATACAAGAAACCCACTGACTTTAAAAGAAAGA AACTGCAGTTATTGACCAAGAAACCACTTTATCTTCATCTACATCAGACTTTGCACAAGG AATGATCCTGACATGAGTGACCTGGACGTCTGTGAATCTCCCCCTCAGTTGAGACTGTCA CAGCTCTGTGTAGCATAGTCACCCTTCAGCAGGCAGGACGCAGGCCGCACCCGGCAGCGA ACGCACGCCGGCGGTCCGTCACTCGGCTGCACCTCGGACCTCCAGCCCGGCCCTTCACTG ACCTGGAAGACTCCCTTGGACACAGGCTTAGCGTAGATCTCGAAATGTTTTCCCTTTTCT ATTATTGTGCAATTAACAGTCTCCTTTCTCATTTACCACTCCTCCTGCCCTGCTTCCTGG AACACTGTTGCGGGTGGGATGTGCTCACCTTCAGACTTAATACAGCAATAAGAATGTGCT AGAGTTTACACACCTGTTCACTTCTGCTCTGATATGCTCTTTGGTTTTTCAAGTTAATGT CACACTCTGGGTAGACGTGGGTAGCACAGTATGAAACTGCTTGAACTGGACCTCTTCATG CTGCCCCAGGCTGCTCCTCACAGACGCCTGGGTTCACCGGATCTCGTGTGTTCCTGCCTA GAAACAGCGTGCCTTGGCCAAGTCAGTGTCCCAGGTGGGAGTGTTCCCAGGTTGTAGCTG TGATTTTTCCAGACCCGATCGTTTTTCTGGAAGTGAGCATATTTTTAGTCTTGTTGATTA GTTTTCTCCTACACCATCTGGTTCCTCTTCCTGAGAGTCATTCTAGGGTTAATGATGGTG GAACCATCTCAGAATCATTACAGACTTTGGATGGGTTTATAATGTCTTCTAAATTACATA ATCTAAAAATAATCTGAGTCAGATGCTAACAAGTTACTGCAGGAATCACTGCTGTTTTTC TGACAACTGATTGTGAAACTGTAAAACCTGCATCCTCTTCTTGTAGTGATGAGGATGCAG GTCTGGAGATACTCTATTTTTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.948519 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.948519 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_022831, + |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 1-279, gnl|bosTau2|chr16 (13292546-13292825) | |
| 1-279, gnl|Hg17|chr1 (219274218-219273940) | |
| 1-279, gnl|Mm7|chr8 (4051716-4051997) | |
| 621-773, gnl|bosTau2|chr16 (13334213-13334366) | |
| 621-773, gnl|Hg17|chr1 (219237959-219237806) | |
| 621-773, gnl|Mm7|chr8 (4052336-4052460) | |
| 989-1570, gnl|bosTau2|chr16 (13338466-13339052) | |
| 989-1570, gnl|canFam2|chr38 (19938917-19939478) | |
| 989-1570, gnl|canFam2|chr38 (19938917-19939478) | |
| 989-1570, gnl|dasNov1|scaffold_13327 (52809-53390) | |
| 989-1570, gnl|dasNov1|scaffold_13327 (52809-53390) | |
| 989-1570, gnl|echTel1|scaffold_292606 (61580-61034) | |
| 989-1570, gnl|echTel1|scaffold_292606 (61580-61034) | |
| 989-1570, gnl|galGal2|chr3 (14365496-14364877) | |
| 989-1570, gnl|galGal2|chr3 (14365496-14364877) | |
| 989-1570, gnl|hg17|chr1 (219230924-219231500) | |
| 989-1570, gnl|Hg17|chr1 (219231726-219231134) | |
| 989-1570, gnl|hg17|chr1_random (2234201-2234777) | |
| 989-1570, gnl|mm7|chrUn_random (7910888-7910393) | |
| 989-1570, gnl|mm7|chrUn_random (7910888-7910393) | |
| 989-1570, gnl|Mm7|chrUn_random (7910146-7910729) | |
| 989-1570, gnl|monDom2|scaffold_13 (29424399-29424975) | |
| 989-1570, gnl|monDom2|scaffold_13 (29424399-29424975) | |
| 989-1570, gnl|oryCun1|scaffold_14489 (1171-1748) | |
| 989-1570, gnl|oryCun1|scaffold_14489 (1171-1748) | |
| 989-1570, gnl|panTro1|chr1 (203088841-203089415) | |
| 989-1570, gnl|panTro1|chr1 (203088841-203089415) | |
| 989-1570, gnl|rheMac2|chr1 (147600699-147600125) | |
| 989-1570, gnl|rheMac2|chr1 (147600699-147600125) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-279, gnl|bosTau2|chr16 (13292546-13292825) | |
| 1-279, gnl|Hg17|chr1 (219274218-219273940) | |
| 1-279, gnl|Mm7|chr8 (4051716-4051997) | |
| 621-773, gnl|bosTau2|chr16 (13334213-13334366) | |
| 621-773, gnl|Hg17|chr1 (219237959-219237806) | |
| 621-773, gnl|Mm7|chr8 (4052336-4052460) | |
| 989-1570, gnl|bosTau2|chr16 (13338466-13339052) | |
| 989-1570, gnl|canFam2|chr38 (19938917-19939478) | |
| 989-1570, gnl|canFam2|chr38 (19938917-19939478) | |
| 989-1570, gnl|dasNov1|scaffold_13327 (52809-53390) | |
| 989-1570, gnl|dasNov1|scaffold_13327 (52809-53390) | |
| 989-1570, gnl|echTel1|scaffold_292606 (61580-61034) | |
| 989-1570, gnl|echTel1|scaffold_292606 (61580-61034) | |
| 989-1570, gnl|galGal2|chr3 (14365496-14364877) | |
| 989-1570, gnl|galGal2|chr3 (14365496-14364877) | |
| 989-1570, gnl|hg17|chr1 (219230924-219231500) | |
| 989-1570, gnl|Hg17|chr1 (219231726-219231134) | |
| 989-1570, gnl|hg17|chr1_random (2234201-2234777) | |
| 989-1570, gnl|mm7|chrUn_random (7910888-7910393) | |
| 989-1570, gnl|mm7|chrUn_random (7910888-7910393) | |
| 989-1570, gnl|Mm7|chrUn_random (7910146-7910729) | |
| 989-1570, gnl|monDom2|scaffold_13 (29424399-29424975) | |
| 989-1570, gnl|monDom2|scaffold_13 (29424399-29424975) | |
| 989-1570, gnl|oryCun1|scaffold_14489 (1171-1748) | |
| 989-1570, gnl|oryCun1|scaffold_14489 (1171-1748) | |
| 989-1570, gnl|panTro1|chr1 (203088841-203089415) | |
| 989-1570, gnl|panTro1|chr1 (203088841-203089415) | |
| 989-1570, gnl|rheMac2|chr1 (147600699-147600125) | |
| 989-1570, gnl|rheMac2|chr1 (147600699-147600125) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| clu (2.75185) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (2.75185) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| tbr (0.154178) | |
| ski (0.146735) | |
| spl (0.143184) | |
| csk (0.140746) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cbl (0.114797) | |
| jca (0.11396) | |
| ldo (0.0970026) |