Non-Coding RNA Search

Ss1.1-Utr1-UTR010046A02.5

Sequence:


               
               TGTGCTGCACAAGCCTTGGCCACTGTGGAGTTTGGTTCTTTGTCCTTTCTTGTTAAACAA
AACCGATGGCTCCCAGTCTAGAGAACGCAGTGGCCTGGTTTTTTAAAGATTCTTTCCATT
CCTGTTAAACCAAAAATCTACCGGCCATGCGGCATCTGAACCTGGCTCTGACCTGGCCGG
GGTTGGCTGGGGAACAGTGCATGCTGGGAAGGAGCAGCCCTCTCGCCAGTGCTCCGGTCT
GACCATGGCATTGGAATGAATGAATGTCAGAGTATTACCGTATCCAGAGCCGCTGCTGCC
CTTCCTACTCGCACCACCATTCAGCCGCCAGAAGGTGGCTTCCCATGGGTGGACATGAGT
CTGCTCGCTGCCAGGTGGGGACCTTAGGTCCCACCAAAATGAATTCTCCAGGAAAAGAAT
GTGGTGGGGCTTCACTCTGAGGTGCCCGAGGCCCCCACCTCCCACCCTGGTCACCTGCAG
GGGAAGGAGCTGGGGTCGGGGGAGAAAGGTCTTGGGAGATGTGAGTCCCTCCCTGCCCAC
ACTGGGCACTGACCACACATCTCCATGGCCAGCCTTGTGCACAGGCAGGACTTGCTTCAG
CCCCTGGGGTGGTGACCTAGACCCGGAAAACCAATTATGAGTGAAAAATGAACCTCTAGA
TCAACTCTGTACCAGAGGAAGCAGGAGCCTCAGAGCCCACCCCCCAGGCCCCCCACATCA
TGTGCCCCCAAAAAACCCCTCTGATGGCTGCAAAGCAGCGCCTTCAGTCCCTGGCCAGTC
TCGGTGTTGCCATCTTTCTTCTACCGACTCCCAGCCCACCCTTCTCAGGCAGTGTTGTCT
TCTCTCACCCAGAGTATTAACACTACTAAGTCTTTCACCTTCATTTCTGACTCAGGATTT
ATTCCCATCCTACCCACTCCAGGCTTACAGAAATAAAATCAAGTGCTAGATAAGCTGGTT
GCCGCCAAGGCAGTAGCCATGTATACCTGGCCGGGGCAGGGCTGAGCGCTGCCCACCCAG
GAGAACCCTTCCTTAGTCAGTGGGGTATTGAGTTGGGTCACCTGTCCACTGCCACAGTCA
CAGCAAGTGCCATGTTGCTGGTCTGGCCTTCCTGTAAGCAGCCGTGGGCTGTGGGCAGAT
GGGGGCCCGGAGATGCAGCATGAGGCTCTTCTCAACAACTTTGGCCGTCTGCTGCCTCTA
ATTCCCTAGTGCTTTGACGTTTGGGGCTGTGTATTACCTCCTTGAAATAATAAAAGAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTGCACAAGCCTTGGCCACTGTGGAGTTTGGTTCTTTGTCCTTTCTTGTTAAACAA
AACCGATGGCTCCCAGTCTAGAGAACGCAGTGGCCTGGTTTTTTAAAGATTCTTTCCATT
CCTGTTAAACCAAAAATCTACCGGCCATGCGGCATCTGAACCTGGCTCTGACCTGGCCGG
GGTTGGCTGGGGAACAGTGCATGCTGGGAAGGAGCAGCCCTCTCGCCAGTGCTCCGGTCT
GACCATGGCATTGGAATGAATGAATGTCAGAGTATTACCGTATCCAGAGCCGCTGCTGCC
CTTCCTACTCGCACCACCATTCAGCCGCCAGAAGGTGGCTTCCCATGGGTGGACATGAGT
CTGCTCGCTGCCAGGTGGGGACCTTAGGTCCCACCAAAATGAATTCTCCAGGAAAAGAAT
GTGGTGGGGCTTCACTCTGAGGTGCCCGAGGCCCCCACCTCCCACCCTGGTCACCTGCAG
GGGAAGGAGCTGGGGTCGGGGGAGAAAGGTCTTGGGAGATGTGAGTCCCTCCCTGCCCAC
ACTGGGCACTGACCACACATCTCCATGGCCAGCCTTGTGCACAGGCAGGACTTGCTTCAG
CCCCTGGGGTGGTGACCTAGACCCGGAAAACCAATTATGAGTGAAAAATGAACCTCTAGA
TCAACTCTGTACCAGAGGAAGCAGGAGCCTCAGAGCCCACCCCCCAGGCCCCCCACATCA
TGTGCCCCCAAAAAACCCCTCTGATGGCTGCAAAGCAGCGCCTTCAGTCCCTGGCCAGTC
TCGGTGTTGCCATCTTTCTTCTACCGACTCCCAGCCCACCCTTCTCAGGCAGTGTTGTCT
TCTCTCACCCAGAGTATTAACACTACTAAGTCTTTCACCTTCATTTCTGACTCAGGATTT
ATTCCCATCCTACCCACTCCAGGCTTACAGAAATAAAATCAAGTGCTAGATAAGCTGGTT
GCCGCCAAGGCAGTAGCCATGTATACCTGGCCGGGGCAGGGCTGAGCGCTGCCCACCCAG
GAGAACCCTTCCTTAGTCAGTGGGGTATTGAGTTGGGTCACCTGTCCACTGCCACAGTCA
CAGCAAGTGCCATGTTGCTGGTCTGGCCTTCCTGTAAGCAGCCGTGGGCTGTGGGCAGAT
GGGGGCCCGGAGATGCAGCATGAGGCTCTTCTCAACAACTTTGGCCGTCTGCTGCCTCTA
ATTCCCTAGTGCTTTGACGTTTGGGGCTGTGTATTACCTCCTTGAAATAATAAAAGAATA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               346-502, - strand, RNAz p=0.807844
               

               
               846-1038, - strand, RNAz p=0.60959

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               346-502, - strand, RNAz p=0.807844
               

               
               846-1038, - strand, RNAz p=0.60959

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1260, gnl|bosTau2|chr10 (52497389-52498638)
               

               
               1-1260, gnl|Hg17|chr14 (64597865-64599113)
               

               
               1-1260, gnl|Mm7|chr12 (74878960-74880089)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1260, gnl|bosTau2|chr10 (52497389-52498638)
               

               
               1-1260, gnl|Hg17|chr14 (64597865-64599113)
               

               
               1-1260, gnl|Mm7|chr12 (74878960-74880089)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               clu (0.239292)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               clu (0.239292)
               

               
               mas (0.210305)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               nca (0.136874)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)

	346-502, - strand, RNAz p=0.807844
	846-1038, - strand, RNAz p=0.60959

	1-1260, gnl\|bosTau2\|chr10 (52497389-52498638)
	1-1260, gnl\|Hg17\|chr14 (64597865-64599113)
	1-1260, gnl\|Mm7\|chr12 (74878960-74880089)

	clu (0.239292)
	mas (0.210305)
	csp (0.161186)
	hyp (0.142837)
	nca (0.136874)
	nmm (0.132802)
	ese (0.126502)