Ss1.1-Utr1-UTR010046B01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCAGGCTCCTCCAGCCCGAGGCCCGCCCAGGACGCAGCGCCTAGACCGCCACCCCGA CAAAAAGACTTCTCTCCAGTAGGGGACAGAGCTTGGGGTCCACCCCCCTTGCCTGGATCC TTCTGCAGTCCCCACGCTTCCCCAGGCCCGGGGACGCAGCTATGGACGACATCTTCGCTC AGTGCCGGGAGGGCAACGCGGTGGCCGTCCGCCTGTGGCTGGACAACACGGAGAACGACC TCAACCAGGGGGACGATCACGGCTTCTCCCCCTTGCACTGGGCCTGCCGAGAAGGCCGCT CTGCTGTGGTTGAGATGCTGATCATGCGAGGGGCACGAATCAATGTCATGAACCGTGGGG ATGACACGCCCCTGCACCTGGCAGCCAGTCACGGACACCGTGATATCGTACAGAAGCTCC TGCAGTACAAAGCTGACATCAACGCAGTGAATGAGCATGGGAACGTGCCGCTGCACTACG CCTGCTTCTGGGGTCAAGACCAGGTGGCAGAGGACCTGGTGGCTAACGGGGCCCTCGTCA GCATCTGTAACAAGTACGGAGAGATGCCTGTGGACAAAGCCAAGGCACCCCTGAGAGAGC TGCTCCGAGAGCGGGCAGAGAAGATGGGCCAGAACCTGAACCGAATTCCATACAAGGACA CATTCTGGAAGGGGACCACCCGCACTCGACCCAGGAACGGGACTCTGAACAAGCACTCCG GCATTGACTTCAAGCAGCTCAACTTCTTGACGAAGCTCAACGAGAACCACTCTGGAGAGC TGTGGAAGGGCCGCTGGCAGGGCAATGACATCGTCGTGAAGATGCTGAAGGTTCGCGACT GGAGCACCAGGAAAAGCAGGGACTTCAACGAGGAGTGTCCCCGGCTCAGGATCTTCTCCC ATCCGAACGTGCTCCCGGTGCTGGGTGCCTGTCAGTCGCCACCTGCTCCTCACCCGACCC TCATCACACACTGGATGCCATACGGATCCCTGTACAACGTGCTACACGAGGGCACCAATT TTGTCGTGGACCAGAGCCAGGCCGTGAAGTTTGCACTGGACATGGCAAGAGGCATGGCCT TCCTACACACGCTAGAGCCCCTGATCCCAAGACATGCACTCAACAGTCGCAGTGTCATGA TTGACGAGGACATGACTGCCCGCATCAGCATGGCCGACGTCAAGTTCTCCTTCCAGTGCC CTGGGCGCATGTATGCCCCTGCCTGGGTGGCCCCTGAAGCTCTGCAGAAGAAGCCTGAAG ACACCAACAGACGCTCAGCAGACATGTGGAGTTTTGCAGTGCTTCTCTGGGAACTGGTGA CGCGGGAGGTCCCCTTTGCTGACCTCTCCAACATGGAAATTGGAATGAAGGTGGCACTGG AAGGCCTGCGGCCCACCATCCCACCAGGCATCTCCCCCCACGTGTGTAAGCTGATGAAGA TCTGCATGAATGAAGACCCTGCGAAGCGGCCCAAGTTCGACATGATCGTTCCCATCCTGG AGAAGATGCAGGACAAGTAGGGCTGGCAAGTCCTGGCCTGAACTCCAGAGGTGTCAGGAC ACGTTGTGGGGGGGCAGCTCCCCAGAGCAGCAGGCCTCGGGCTGCCGCCCCTGCCTCCAG TCACGGTACTACCCAGCCGGGGGCCCTCCCCTGCCCCCAGCCCTGCCACTGTGGCCCCGC AAGGGAATGGGCTCAAAGCTTTGTCACTTGCCACACGGTGTCTCCCAGCACGGGAGGGAT CAGCCCTGCCTGTCACAATAAAGTTTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCAGGCTCCTCCAGCCCGAGGCCCGCCCAGGACGCAGCGCCTAGACCGCCACCCCGA CAAAAAGACTTCTCTCCAGTAGGGGACAGAGCTTGGGGTCCACCCCCCTTGCCTGGATCC TTCTGCAGTCCCCACGCTTCCCCAGGCCCGGGGACGCAGCTATGGACGACATCTTCGCTC AGTGCCGGGAGGGCAACGCGGTGGCCGTCCGCCTGTGGCTGGACAACACGGAGAACGACC TCAACCAGGGGGACGATCACGGCTTCTCCCCCTTGCACTGGGCCTGCCGAGAAGGCCGCT CTGCTGTGGTTGAGATGCTGATCATGCGAGGGGCACGAATCAATGTCATGAACCGTGGGG ATGACACGCCCCTGCACCTGGCAGCCAGTCACGGACACCGTGATATCGTACAGAAGCTCC TGCAGTACAAAGCTGACATCAACGCAGTGAATGAGCATGGGAACGTGCCGCTGCACTACG CCTGCTTCTGGGGTCAAGACCAGGTGGCAGAGGACCTGGTGGCTAACGGGGCCCTCGTCA GCATCTGTAACAAGTACGGAGAGATGCCTGTGGACAAAGCCAAGGCACCCCTGAGAGAGC TGCTCCGAGAGCGGGCAGAGAAGATGGGCCAGAACCTGAACCGAATTCCATACAAGGACA CATTCTGGAAGGGGACCACCCGCACTCGACCCAGGAACGGGACTCTGAACAAGCACTCCG GCATTGACTTCAAGCAGCTCAACTTCTTGACGAAGCTCAACGAGAACCACTCTGGAGAGC TGTGGAAGGGCCGCTGGCAGGGCAATGACATCGTCGTGAAGATGCTGAAGGTTCGCGACT GGAGCACCAGGAAAAGCAGGGACTTCAACGAGGAGTGTCCCCGGCTCAGGATCTTCTCCC ATCCGAACGTGCTCCCGGTGCTGGGTGCCTGTCAGTCGCCACCTGCTCCTCACCCGACCC TCATCACACACTGGATGCCATACGGATCCCTGTACAACGTGCTACACGAGGGCACCAATT TTGTCGTGGACCAGAGCCAGGCCGTGAAGTTTGCACTGGACATGGCAAGAGGCATGGCCT TCCTACACACGCTAGAGCCCCTGATCCCAAGACATGCACTCAACAGTCGCAGTGTCATGA TTGACGAGGACATGACTGCCCGCATCAGCATGGCCGACGTCAAGTTCTCCTTCCAGTGCC CTGGGCGCATGTATGCCCCTGCCTGGGTGGCCCCTGAAGCTCTGCAGAAGAAGCCTGAAG ACACCAACAGACGCTCAGCAGACATGTGGAGTTTTGCAGTGCTTCTCTGGGAACTGGTGA CGCGGGAGGTCCCCTTTGCTGACCTCTCCAACATGGAAATTGGAATGAAGGTGGCACTGG AAGGCCTGCGGCCCACCATCCCACCAGGCATCTCCCCCCACGTGTGTAAGCTGATGAAGA TCTGCATGAATGAAGACCCTGCGAAGCGGCCCAAGTTCGACATGATCGTTCCCATCCTGG AGAAGATGCAGGACAAGTAGGGCTGGCAAGTCCTGGCCTGAACTCCAGAGGTGTCAGGAC ACGTTGTGGGGGGGCAGCTCCCCAGAGCAGCAGGCCTCGGGCTGCCGCCCCTGCCTCCAG TCACGGTACTACCCAGCCGGGGGCCCTCCCCTGCCCCCAGCCCTGCCACTGTGGCCCCGC AAGGGAATGGGCTCAAAGCTTTGTCACTTGCCACACGGTGTCTCCCAGCACGGGAGGGAT CAGCCCTGCCTGTCACAATAAAGTTTATTATGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 887-1776, - strand, RNAz p=0.63604 | |
| 887-981, - strand, RNAz p=0.985194 | |
| 1488-1606, + strand, RNAz p=0.794594 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 887-1776, - strand, RNAz p=0.63604 | |
| 887-981, - strand, RNAz p=0.985194 | |
| 1488-1606, + strand, RNAz p=0.794594 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_001014795, + |
| Aligned organism(s): 53 entry(ies) | More info |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
| 250-416, gnl|bosTau2|chr15 (32776909-32777075) | |
| 250-416, gnl|canFam2|chr21 (33102435-33102636) | |
| 250-416, gnl|echTel1|scaffold_308473 (35595-35392) | |
| 250-416, gnl|fr1|chrUn (15417116-15416928) | |
| 250-416, gnl|galGal2|chr1 (188002174-188001975) | |
| 250-416, gnl|hg17|chr11 (6585821-6586024) | |
| 250-416, gnl|Hg17|chr11 (6585851-6586017) | |
| 250-416, gnl|mm7|chr7 (101796568-101796770) | |
| 250-416, gnl|Mm7|chr7 (101796597-101796763) | |
| 250-416, gnl|monDom2|scaffold_43 (18317190-18317011) | |
| 250-416, gnl|oryCun1|scaffold_211436 (5268-5465) | |
| 250-416, gnl|panTro1|chr9 (6729230-6729433) | |
| 250-416, gnl|rheMac2|chr14 (65595055-65594852) | |
| 250-416, gnl|rn3|chr1 (163580264-163580466) | |
| 250-416, gnl|tetNig1|chr16 (4158917-4159102) | |
| 250-416, gnl|xenTro1|scaffold_1488 (95563-95736) | |
| 887-1017, gnl|bosTau2|chr15 (32778306-32778436) | |
| 887-1017, gnl|canFam2|chr21 (33103884-33104035) | |
| 887-1017, gnl|dasNov1|scaffold_22726 (20669-20517) | |
| 887-1017, gnl|echTel1|scaffold_308473 (34189-34042) | |
| 887-1017, gnl|fr1|chrUn (15415062-15414909) | |
| 887-1017, gnl|galGal2|chr1 (188000382-188000232) | |
| 887-1017, gnl|hg17|chr11 (6587300-6587453) | |
| 887-1017, gnl|Hg17|chr11 (6587316-6587446) | |
| 887-1017, gnl|mm7|chr7 (101797983-101798131) | |
| 887-1017, gnl|Mm7|chr7 (101797998-101798128) | |
| 887-1017, gnl|monDom2|scaffold_43 (18314985-18314839) | |
| 887-1017, gnl|oryCun1|scaffold_211436 (6769-6922) | |
| 887-1017, gnl|panTro1|chr9 (6730708-6730861) | |
| 887-1017, gnl|rheMac2|chr14 (65593585-65593432) | |
| 887-1017, gnl|rn3|chr1 (163581665-163581814) | |
| 887-1017, gnl|tetNig1|chr16 (4160821-4160978) | |
| 887-1017, gnl|xenTro1|scaffold_1488 (99183-99333) | |
| 1018-1163, gnl|bosTau2|chr15 (32778532-32778678) | |
| 1018-1163, gnl|canFam2|chr21 (33104092-33104261) | |
| 1018-1163, gnl|dasNov1|scaffold_22726 (20454-20286) | |
| 1018-1163, gnl|echTel1|scaffold_308473 (33992-33818) | |
| 1018-1163, gnl|fr1|chrUn (15414843-15414671) | |
| 1018-1163, gnl|galGal2|chr1 (188000017-187999842) | |
| 1018-1163, gnl|hg17|chr11 (6587512-6587684) | |
| 1018-1163, gnl|Hg17|chr11 (6587531-6587677) | |
| 1018-1163, gnl|mm7|chr7 (101798189-101798354) | |
| 1018-1163, gnl|Mm7|chr7 (101798208-101798350) | |
| 1018-1163, gnl|monDom2|scaffold_43 (18314716-18314535) | |
| 1018-1163, gnl|oryCun1|scaffold_211436 (6985-7156) | |
| 1018-1163, gnl|panTro1|chr9 (6730926-6731098) | |
| 1018-1163, gnl|rheMac2|chr14 (65593367-65593194) | |
| 1018-1163, gnl|rn3|chr1 (163581867-163582033) | |
| 1018-1163, gnl|tetNig1|chr16 (4161059-4161222) | |
| 1018-1163, gnl|xenTro1|scaffold_1341 (62038-61890) | |
| 1369-1776, gnl|bosTau2|chr15 (32779265-32779676) | |
| 1369-1776, gnl|Hg17|chr11 (6588267-6588677) | |
| 1369-1776, gnl|Mm7|chr7 (101798932-101799343) |
| Aligned organism(s): 53 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 250-416, gnl|bosTau2|chr15 (32776909-32777075) | |
| 250-416, gnl|canFam2|chr21 (33102435-33102636) | |
| 250-416, gnl|echTel1|scaffold_308473 (35595-35392) | |
| 250-416, gnl|fr1|chrUn (15417116-15416928) | |
| 250-416, gnl|galGal2|chr1 (188002174-188001975) | |
| 250-416, gnl|hg17|chr11 (6585821-6586024) | |
| 250-416, gnl|Hg17|chr11 (6585851-6586017) | |
| 250-416, gnl|mm7|chr7 (101796568-101796770) | |
| 250-416, gnl|Mm7|chr7 (101796597-101796763) | |
| 250-416, gnl|monDom2|scaffold_43 (18317190-18317011) | |
| 250-416, gnl|oryCun1|scaffold_211436 (5268-5465) | |
| 250-416, gnl|panTro1|chr9 (6729230-6729433) | |
| 250-416, gnl|rheMac2|chr14 (65595055-65594852) | |
| 250-416, gnl|rn3|chr1 (163580264-163580466) | |
| 250-416, gnl|tetNig1|chr16 (4158917-4159102) | |
| 250-416, gnl|xenTro1|scaffold_1488 (95563-95736) | |
| 887-1017, gnl|bosTau2|chr15 (32778306-32778436) | |
| 887-1017, gnl|canFam2|chr21 (33103884-33104035) | |
| 887-1017, gnl|dasNov1|scaffold_22726 (20669-20517) | |
| 887-1017, gnl|echTel1|scaffold_308473 (34189-34042) | |
| 887-1017, gnl|fr1|chrUn (15415062-15414909) | |
| 887-1017, gnl|galGal2|chr1 (188000382-188000232) | |
| 887-1017, gnl|hg17|chr11 (6587300-6587453) | |
| 887-1017, gnl|Hg17|chr11 (6587316-6587446) | |
| 887-1017, gnl|mm7|chr7 (101797983-101798131) | |
| 887-1017, gnl|Mm7|chr7 (101797998-101798128) | |
| 887-1017, gnl|monDom2|scaffold_43 (18314985-18314839) | |
| 887-1017, gnl|oryCun1|scaffold_211436 (6769-6922) | |
| 887-1017, gnl|panTro1|chr9 (6730708-6730861) | |
| 887-1017, gnl|rheMac2|chr14 (65593585-65593432) | |
| 887-1017, gnl|rn3|chr1 (163581665-163581814) | |
| 887-1017, gnl|tetNig1|chr16 (4160821-4160978) | |
| 887-1017, gnl|xenTro1|scaffold_1488 (99183-99333) | |
| 1018-1163, gnl|bosTau2|chr15 (32778532-32778678) | |
| 1018-1163, gnl|canFam2|chr21 (33104092-33104261) | |
| 1018-1163, gnl|dasNov1|scaffold_22726 (20454-20286) | |
| 1018-1163, gnl|echTel1|scaffold_308473 (33992-33818) | |
| 1018-1163, gnl|fr1|chrUn (15414843-15414671) | |
| 1018-1163, gnl|galGal2|chr1 (188000017-187999842) | |
| 1018-1163, gnl|hg17|chr11 (6587512-6587684) | |
| 1018-1163, gnl|Hg17|chr11 (6587531-6587677) | |
| 1018-1163, gnl|mm7|chr7 (101798189-101798354) | |
| 1018-1163, gnl|Mm7|chr7 (101798208-101798350) | |
| 1018-1163, gnl|monDom2|scaffold_43 (18314716-18314535) | |
| 1018-1163, gnl|oryCun1|scaffold_211436 (6985-7156) | |
| 1018-1163, gnl|panTro1|chr9 (6730926-6731098) | |
| 1018-1163, gnl|rheMac2|chr14 (65593367-65593194) | |
| 1018-1163, gnl|rn3|chr1 (163581867-163582033) | |
| 1018-1163, gnl|tetNig1|chr16 (4161059-4161222) | |
| 1018-1163, gnl|xenTro1|scaffold_1341 (62038-61890) | |
| 1369-1776, gnl|bosTau2|chr15 (32779265-32779676) | |
| 1369-1776, gnl|Hg17|chr11 (6588267-6588677) | |
| 1369-1776, gnl|Mm7|chr7 (101798932-101799343) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| clu (0.598229) | |
| amn (0.417711) | |
| sme (0.305437) | |
| nca (0.273748) | |
| ece (0.229305) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.598229) | |
| amn (0.417711) | |
| sme (0.305437) | |
| nca (0.273748) | |
| ece (0.229305) | |
| nms (0.213858) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| fty (0.17584) | |
| ill (0.175593) | |
| ste (0.135208) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |