Non-Coding RNA Search

Ss1.1-Utr1-UTR010046E03.5

Sequence:


               
               GCTATGTATATGGTGCAAAATCCACAGCATACTTTCTGCTTAACAGATGTCCCTGGCAGT
ACCAGAAACCAAGGAATGGAAGGCAAACTGAGGGCCAATCCCCAGGATGCTGAGGTTTAG
TCAGGAAGGTGATGCTAAAGGCTGAGCTATTTTCCCTGCAGGCAGATACCGAGCAGGTCT
TGGCACTTTGGCATTGCCCCTTCTCTGTGCTCTAGGTGTCTTGGAAGGCTTCGCCGGCAT
TTCAGGTCCTCACTTCCCTCCCTAGACGCATTCCTGTTTCCGGTGTTGAGAAAAAGAAGA
GGAAGCGGGAAAAGCAGCTATCGCAGACACAGTCCCAGCAGCAAGTCCCAGAGGCAGAGG
GTGCTCTGGCCTCCAAAAGCAAGAAGCCATGTGTCCAGTACCTGCCCCCCGAGAAGCCCT
GTGACAGCCCTGCCTCCTCCCACGGCAGCATGCTGGACTCCCCAGCCACCCCTTCGGCGG
CCTTGGCCTCTCCTGCAGCCCCGGCCGCCACCCACTCCGAGCAAGCCCAGCCCCTCTCCC
TCACCACCAAGCCAGAGACCCGGGCCCAGCTGGCTCTCCACTCAGCCGCCTTCCTGTCAG
CAAAGGCTGCCGCCACCTCCTCTGGCCAGATGGGCAGCCAGGCCCCCCTCCTGTCCCGGC
CCCTCCCCCTGGGGTCCGTGCCCACAGCTCTGCTGACGTCCCCCCCTTCTTTCCCAACCA
CTCTCCGTGCTCACCAGGCCCTCCCGGTGCTCCAAGCCCAGCCTCTTTCCTTGGTCACCA
AGTCTGCCCACTAAGCTGCCCCCTGACCTACGCAGGCTGACACGTGACTCATCGAGTAGT
AATGATGCAGAAGAAAAAAAAAAAAGAAAAGGAAACTTTATTGGTCAATATTTGACCACT
CTGGACTGTTCTGTAAAGTGACTGGTAACAGCAGCACTTTACGTTTTGTAGATGTAACCA
GTAGCTGATCTTAAGGTTTTTTTTAAAAAAACAAAACAAAACGAAACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTATGTATATGGTGCAAAATCCACAGCATACTTTCTGCTTAACAGATGTCCCTGGCAGT
ACCAGAAACCAAGGAATGGAAGGCAAACTGAGGGCCAATCCCCAGGATGCTGAGGTTTAG
TCAGGAAGGTGATGCTAAAGGCTGAGCTATTTTCCCTGCAGGCAGATACCGAGCAGGTCT
TGGCACTTTGGCATTGCCCCTTCTCTGTGCTCTAGGTGTCTTGGAAGGCTTCGCCGGCAT
TTCAGGTCCTCACTTCCCTCCCTAGACGCATTCCTGTTTCCGGTGTTGAGAAAAAGAAGA
GGAAGCGGGAAAAGCAGCTATCGCAGACACAGTCCCAGCAGCAAGTCCCAGAGGCAGAGG
GTGCTCTGGCCTCCAAAAGCAAGAAGCCATGTGTCCAGTACCTGCCCCCCGAGAAGCCCT
GTGACAGCCCTGCCTCCTCCCACGGCAGCATGCTGGACTCCCCAGCCACCCCTTCGGCGG
CCTTGGCCTCTCCTGCAGCCCCGGCCGCCACCCACTCCGAGCAAGCCCAGCCCCTCTCCC
TCACCACCAAGCCAGAGACCCGGGCCCAGCTGGCTCTCCACTCAGCCGCCTTCCTGTCAG
CAAAGGCTGCCGCCACCTCCTCTGGCCAGATGGGCAGCCAGGCCCCCCTCCTGTCCCGGC
CCCTCCCCCTGGGGTCCGTGCCCACAGCTCTGCTGACGTCCCCCCCTTCTTTCCCAACCA
CTCTCCGTGCTCACCAGGCCCTCCCGGTGCTCCAAGCCCAGCCTCTTTCCTTGGTCACCA
AGTCTGCCCACTAAGCTGCCCCCTGACCTACGCAGGCTGACACGTGACTCATCGAGTAGT
AATGATGCAGAAGAAAAAAAAAAAAGAAAAGGAAACTTTATTGGTCAATATTTGACCACT
CTGGACTGTTCTGTAAAGTGACTGGTAACAGCAGCACTTTACGTTTTGTAGATGTAACCA
GTAGCTGATCTTAAGGTTTTTTTTAAAAAAACAAAACAAAACGAAACAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               399-678, - strand, RNAz p=0.973538
               

               
               837-1020, + strand, RNAz p=0.987675

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               399-678, - strand, RNAz p=0.973538
               

               
               837-1020, + strand, RNAz p=0.987675

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               448-664, - strand, RNAmicro p=0.941397
               

               
               921-1027, - strand, RNAmicro p=0.905306

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               448-664, - strand, RNAmicro p=0.941397
               

               
               921-1027, - strand, RNAmicro p=0.905306

Similar Transcript(s): 12 entry(ies)

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Similar Transcript(s): 12 entry(ies)

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               399-642, BP171627 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP171627.1|), blast E-value=0, identity=100% 
               

               
               399-641, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524796.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, LB0254.CR_K23 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV869967.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, LB02811.CR_C21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908465.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, 001003BEMN033714HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY132121.1|), blast E-value=0, identity=93.42% 
               

               
               399-641, LB02939.CR_K08 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351572.1|), 
blast E-value=0, identity=93.42% 
               

               
               867-976, AU278804 Cloned bovine placenta cDNA Bos taurus cDNA clone 
(dbj|AU278804.1|), blast E-value=0, identity=100% 
               

               
               867-976, AU279023 Cloned bovine placenta cDNA Bos taurus cDNA clone 
(dbj|AU279023.1|), blast E-value=0, identity=100% 
               

               
               867-976, BP109507 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone 
(dbj|BP109507.1|), blast E-value=0, identity=100% 
               

               
               867-976, 961175 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK772617.1|), 
blast E-value=0, identity=100% 
               

               
               867-976, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524796.1|), 
blast E-value=0, identity=100% 
               

               
               867-976, 000711BCNA001510HT BCNA Bos taurus cDNA, mRNA sequence 
(gb|DY122737.1|), blast E-value=0, identity=100%

Similar Transcript(s): 12 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               399-642, BP171627 full-length enriched swine cDNA library, adult uterus Sus 
(dbj|BP171627.1|), blast E-value=0, identity=100% 
               

               
               399-641, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524796.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, LB0254.CR_K23 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV869967.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, LB02811.CR_C21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV908465.1|), 
blast E-value=0, identity=93.42% 
               

               
               399-641, 001003BEMN033714HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY132121.1|), blast E-value=0, identity=93.42% 
               

               
               399-641, LB02939.CR_K08 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE351572.1|), 
blast E-value=0, identity=93.42% 
               

               
               867-976, AU278804 Cloned bovine placenta cDNA Bos taurus cDNA clone 
(dbj|AU278804.1|), blast E-value=0, identity=100% 
               

               
               867-976, AU279023 Cloned bovine placenta cDNA Bos taurus cDNA clone 
(dbj|AU279023.1|), blast E-value=0, identity=100% 
               

               
               867-976, BP109507 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone 
(dbj|BP109507.1|), blast E-value=0, identity=100% 
               

               
               867-976, 961175 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb|CK772617.1|), 
blast E-value=0, identity=100% 
               

               
               867-976, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN524796.1|), 
blast E-value=0, identity=100% 
               

               
               867-976, 000711BCNA001510HT BCNA Bos taurus cDNA, mRNA sequence 
(gb|DY122737.1|), blast E-value=0, identity=100%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_031283, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_031283, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               360-1020, gnl|bosTau2|chr11 (34800487-34799832)
               

               
               360-1020, gnl|Hg17|chr2 (85447809-85448467)
               

               
               360-1020, gnl|Mm7|chr6 (72645725-72645014)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               360-1020, gnl|bosTau2|chr11 (34800487-34799832)
               

               
               360-1020, gnl|Hg17|chr2 (85447809-85448467)
               

               
               360-1020, gnl|Mm7|chr6 (72645725-72645014)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               fce (0.543183)
               

               
               eep (0.367692)
               

               
               eru (0.120048)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               eep (0.367692)
               

               
               eru (0.120048)

	399-678, - strand, RNAz p=0.973538
	837-1020, + strand, RNAz p=0.987675

	448-664, - strand, RNAmicro p=0.941397
	921-1027, - strand, RNAmicro p=0.905306

	399-642, BP171627 full-length enriched swine cDNA library, adult uterus Sus (dbj\|BP171627.1\|), blast E-value=0, identity=100%
	399-641, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN524796.1\|), blast E-value=0, identity=93.42%
	399-641, LB0254.CR_K23 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV869967.1\|), blast E-value=0, identity=93.42%
	399-641, LB02811.CR_C21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV908465.1\|), blast E-value=0, identity=93.42%
	399-641, 001003BEMN033714HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY132121.1\|), blast E-value=0, identity=93.42%
	399-641, LB02939.CR_K08 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE351572.1\|), blast E-value=0, identity=93.42%
	867-976, AU278804 Cloned bovine placenta cDNA Bos taurus cDNA clone (dbj\|AU278804.1\|), blast E-value=0, identity=100%
	867-976, AU279023 Cloned bovine placenta cDNA Bos taurus cDNA clone (dbj\|AU279023.1\|), blast E-value=0, identity=100%
	867-976, BP109507 ORCS bovine utero-placenta cDNA Bos taurus cDNA clone (dbj\|BP109507.1\|), blast E-value=0, identity=100%
	867-976, 961175 MARC 2BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK772617.1\|), blast E-value=0, identity=100%
	867-976, 1268488 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN524796.1\|), blast E-value=0, identity=100%
	867-976, 000711BCNA001510HT BCNA Bos taurus cDNA, mRNA sequence (gb\|DY122737.1\|), blast E-value=0, identity=100%

	360-1020, gnl\|bosTau2\|chr11 (34800487-34799832)
	360-1020, gnl\|Hg17\|chr2 (85447809-85448467)
	360-1020, gnl\|Mm7\|chr6 (72645725-72645014)