Ss1.1-Utr1-UTR010046G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CAGTGACTCGGCAGGAGAAGATGGCGACGGTGTGGGATGAGGCTGAGCAAGATGGAATCG GGGAGGAAGTACTCAAGATGTCCACAGAAGAGATCGTGCAGCGCACACGGCTGCTGGACA GTGAAATCAAGATCATGAAGAGTGAAGTGTTACGAGTCACCCACGAACTCCAAGCCATGA AGGACAAGATCAAAGAGAACAGTGAGAAAATCAAAGTGAATAAGACCCTGCCGTACCTGG TCTCCAACGTCATCGAGCTTCTGGACGTTGATCCCAATGACCAAGAGGAAGATGGTGCCA ATATTGACCTGGATTCCCAGAGGAAGGGCAAGTGTGCAGTGATCAAAACCTCTACACGAC AGACATACTTTCTACCTGTGATTGGGTTGGTGGATGCTGAAAAGCTGAAGCCAGGAGACT TGGTGGGTGTGAACAAAGACTCCTACCTGATCCTGGAGACCCTGCCCACAGAGTATGACT CGAGGGTGAAGGCCATGGAGGTGGACGAGAGGCCCACAGAGCAATACAGTGACATCGGGG GCCTGGACAAGCAGATTCAGGAGCTGGTGGAGGCCATTGTCCTGCCAATGAACCACAAGG AGAAGTTTGAGAACTTGGGGATCCAGCCTCCAAAGGGGGTGCTGATGTACGGGCCCCCAG GTACAGGGAAGACCTTGCTGGCCCGGGCCTGTGCTGCACAGACCAAGGCCACCTTCCTGA AGTTGGCGGGCCCCCAGCTGGTGCAGATGTTCATTGGGGATGGTGCCAAGCTGGTCCGGG ACGCCTTTGCTCTGGCCAAGGAGAAAGCGCCGTCTATCATCTTCATTGATGAGCTGGATG CCATTGGTACCAAGCGCTTTGACAGCGAGAAGGCCGGAGACCGGGAGGTGCAGAGGACGA TGCTGGAGCTTCTGAACCAGCTGGATGGATTCCAGCCCAACACCCAAGTGAAGGTGATTG CAGCCACTAACAGGGTGGACATCCTGGACCCTGCCCTTCTCCGCTCAGGCCGCCTGGACC GCAAGATTGAGTTCCCGATGCCCAACGAGGAGGCCCGGGCCAGAATCATGCAGATCCACT CCCGAAAGATGAACGTCAGTCCCGACGTGAACTACGAGGAGCTGGCCCGCTGTACAGATG ACTTCAACGGGGCCCAGTGCAAGGCTGTGTGTGTGGAGGCGGGCATGATCGCGCTGCGCA GGGGCGCCACAGAGCTCACCCACGAGGACTACATGGAGGGCATCCTGGAGGTCCAGGCTA AGAAGAAGGCCAACCTGCAGTACTACGCCTAGGCTCGCCGCCACACCTGCTGTCTGGTCT GTTGCTGGTCAAGACTCGTAATAAAGGATGGTTTCAGGTTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CAGTGACTCGGCAGGAGAAGATGGCGACGGTGTGGGATGAGGCTGAGCAAGATGGAATCG GGGAGGAAGTACTCAAGATGTCCACAGAAGAGATCGTGCAGCGCACACGGCTGCTGGACA GTGAAATCAAGATCATGAAGAGTGAAGTGTTACGAGTCACCCACGAACTCCAAGCCATGA AGGACAAGATCAAAGAGAACAGTGAGAAAATCAAAGTGAATAAGACCCTGCCGTACCTGG TCTCCAACGTCATCGAGCTTCTGGACGTTGATCCCAATGACCAAGAGGAAGATGGTGCCA ATATTGACCTGGATTCCCAGAGGAAGGGCAAGTGTGCAGTGATCAAAACCTCTACACGAC AGACATACTTTCTACCTGTGATTGGGTTGGTGGATGCTGAAAAGCTGAAGCCAGGAGACT TGGTGGGTGTGAACAAAGACTCCTACCTGATCCTGGAGACCCTGCCCACAGAGTATGACT CGAGGGTGAAGGCCATGGAGGTGGACGAGAGGCCCACAGAGCAATACAGTGACATCGGGG GCCTGGACAAGCAGATTCAGGAGCTGGTGGAGGCCATTGTCCTGCCAATGAACCACAAGG AGAAGTTTGAGAACTTGGGGATCCAGCCTCCAAAGGGGGTGCTGATGTACGGGCCCCCAG GTACAGGGAAGACCTTGCTGGCCCGGGCCTGTGCTGCACAGACCAAGGCCACCTTCCTGA AGTTGGCGGGCCCCCAGCTGGTGCAGATGTTCATTGGGGATGGTGCCAAGCTGGTCCGGG ACGCCTTTGCTCTGGCCAAGGAGAAAGCGCCGTCTATCATCTTCATTGATGAGCTGGATG CCATTGGTACCAAGCGCTTTGACAGCGAGAAGGCCGGAGACCGGGAGGTGCAGAGGACGA TGCTGGAGCTTCTGAACCAGCTGGATGGATTCCAGCCCAACACCCAAGTGAAGGTGATTG CAGCCACTAACAGGGTGGACATCCTGGACCCTGCCCTTCTCCGCTCAGGCCGCCTGGACC GCAAGATTGAGTTCCCGATGCCCAACGAGGAGGCCCGGGCCAGAATCATGCAGATCCACT CCCGAAAGATGAACGTCAGTCCCGACGTGAACTACGAGGAGCTGGCCCGCTGTACAGATG ACTTCAACGGGGCCCAGTGCAAGGCTGTGTGTGTGGAGGCGGGCATGATCGCGCTGCGCA GGGGCGCCACAGAGCTCACCCACGAGGACTACATGGAGGGCATCCTGGAGGTCCAGGCTA AGAAGAAGGCCAACCTGCAGTACTACGCCTAGGCTCGCCGCCACACCTGCTGTCTGGTCT GTTGCTGGTCAAGACTCGTAATAAAGGATGGTTTCAGGTTAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 739-856, + strand, RNAz p=0.514437 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 739-856, + strand, RNAz p=0.514437 |
| Aligned organism(s): 90 entry(ies) | More info |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
| 130-257, gnl|bosTau2|chr15 (48890389-48890516) | |
| 130-257, gnl|canFam2|chr18 (45247593-45247459) | |
| 130-257, gnl|danRer3|chr7 (28891692-28891559) | |
| 130-257, gnl|echTel1|scaffold_144869 (717-849) | |
| 130-257, gnl|fr1|chrUn (158980816-158980682) | |
| 130-257, gnl|galGal2|chr5 (20156932-20156798) | |
| 130-257, gnl|hg17|chr11 (47403246-47403380) | |
| 130-257, gnl|Hg17|chr11 (47403375-47403248) | |
| 130-257, gnl|loxAfr1|scaffold_199672 (1233-1099) | |
| 130-257, gnl|mm7|chr2 (90905824-90905690) | |
| 130-257, gnl|Mm7|chr2 (90905693-90905820) | |
| 130-257, gnl|monDom2|scaffold_33 (13284227-13284361) | |
| 130-257, gnl|panTro1|chr9 (47922232-47922366) | |
| 130-257, gnl|rheMac2|chr14 (24693713-24693579) | |
| 130-257, gnl|rn3|chr3 (75311021-75310887) | |
| 130-257, gnl|tetNig1|chr5 (3610203-3610331) | |
| 130-257, gnl|xenTro1|scaffold_1085 (255035-255168) | |
| 425-575, gnl|bosTau2|chr15 (48891495-48891645) | |
| 425-575, gnl|canFam2|chrX (54726254-54726118) | |
| 425-575, gnl|danRer3|chr7 (28893687-28893823) | |
| 425-575, gnl|dasNov1|scaffold_48451 (14848-14714) | |
| 425-575, gnl|echTel1|scaffold_306857 (8806-8670) | |
| 425-575, gnl|fr1|chrUn (158980981-158981117) | |
| 425-575, gnl|galGal2|chr5 (20159089-20159225) | |
| 425-575, gnl|Hg17|chr11 (47402311-47402161) | |
| 425-575, gnl|hg17|chr9 (19017295-19017429) | |
| 425-575, gnl|loxAfr1|scaffold_11989 (28099-27963) | |
| 425-575, gnl|mm7|chr2 (90906621-90906757) | |
| 425-575, gnl|Mm7|chr2 (90906620-90906770) | |
| 425-575, gnl|monDom2|scaffold_3 (123404773-123404637) | |
| 425-575, gnl|oryCun1|scaffold_199379 (4107-4238) | |
| 425-575, gnl|panTro1|chr11 (19289724-19289858) | |
| 425-575, gnl|rheMac2|chr15 (57954939-57954803) | |
| 425-575, gnl|rn3|chr3 (75311895-75312031) | |
| 425-575, gnl|tetNig1|chr5 (3610038-3609902) | |
| 425-575, gnl|xenTro1|scaffold_1085 (253538-253402) | |
| 703-856, gnl|bosTau2|chr15 (48892306-48892459) | |
| 703-856, gnl|canFam2|chr18 (45249520-45249371) | |
| 703-856, gnl|canFam2|chrX (54725970-54725823) | |
| 703-856, gnl|danRer3|chr7 (28894320-28894173) | |
| 703-856, gnl|danRer3|chr7 (28894175-28894320) | |
| 703-856, gnl|dasNov1|scaffold_11277 (5271-5051) | |
| 703-856, gnl|dasNov1|scaffold_11277 (5033-5264) | |
| 703-856, gnl|echTel1|scaffold_306857 (7930-8079) | |
| 703-856, gnl|echTel1|scaffold_306857 (8079-7932) | |
| 703-856, gnl|fr1|chrUn (158981414-158981265) | |
| 703-856, gnl|fr1|chrUn (158981265-158981412) | |
| 703-856, gnl|galGal2|chr5 (20159840-20159691) | |
| 703-856, gnl|galGal2|chr5 (20159691-20159835) | |
| 703-856, gnl|hg17|chr11 (47400700-47400849) | |
| 703-856, gnl|Hg17|chr11 (47400855-47400701) | |
| 703-856, gnl|hg17|chr9 (19017569-19017716) | |
| 703-856, gnl|loxAfr1|scaffold_4277 (49168-49387) | |
| 703-856, gnl|loxAfr1|scaffold_4277 (49405-49170) | |
| 703-856, gnl|mm7|chr2 (90907779-90907630) | |
| 703-856, gnl|mm7|chr2 (90907630-90907776) | |
| 703-856, gnl|Mm7|chr2 (90907623-90907776) | |
| 703-856, gnl|monDom2|scaffold_3 (123404489-123404342) | |
| 703-856, gnl|monDom2|scaffold_33 (13282462-13282611) | |
| 703-856, gnl|oryCun1|scaffold_199379 (5041-4892) | |
| 703-856, gnl|oryCun1|scaffold_199379 (4892-5039) | |
| 703-856, gnl|panTro1|chr11 (19289998-19290145) | |
| 703-856, gnl|panTro1|chr9 (47919674-47919823) | |
| 703-856, gnl|rheMac2|chr14 (24695951-24695802) | |
| 703-856, gnl|rheMac2|chr15 (57954655-57954510) | |
| 703-856, gnl|rn3|chr3 (75313111-75312962) | |
| 703-856, gnl|rn3|chr3 (75312962-75313109) | |
| 703-856, gnl|tetNig1|chr5 (3609605-3609754) | |
| 703-856, gnl|tetNig1|chr5 (3609754-3609607) | |
| 703-856, gnl|xenTro1|scaffold_1085 (252924-253073) | |
| 703-856, gnl|xenTro1|scaffold_1085 (253073-252929) | |
| 952-1099, gnl|bosTau2|chr15 (48893644-48893791) | |
| 952-1099, gnl|canFam2|chrX (54725727-54725620) | |
| 952-1099, gnl|danRer3|chr7 (28894507-28894609) | |
| 952-1099, gnl|dasNov1|scaffold_62333 (8801-8709) | |
| 952-1099, gnl|echTel1|scaffold_306857 (6853-6751) | |
| 952-1099, gnl|fr1|chrUn (158981661-158981763) | |
| 952-1099, gnl|galGal2|chr5 (20160600-20160707) | |
| 952-1099, gnl|Hg17|chr11 (47398538-47398391) | |
| 952-1099, gnl|hg17|chr9 (19017812-19017899) | |
| 952-1099, gnl|loxAfr1|scaffold_4277 (48982-48904) | |
| 952-1099, gnl|mm7|chr2 (90908725-90908832) | |
| 952-1099, gnl|Mm7|chr2 (90908724-90908871) | |
| 952-1099, gnl|monDom2|scaffold_3 (123404246-123404139) | |
| 952-1099, gnl|oryCun1|scaffold_185845 (87-194) | |
| 952-1099, gnl|panTro1|chr11 (19290241-19290328) | |
| 952-1099, gnl|rheMac2|chr15 (57954415-57954308) | |
| 952-1099, gnl|rn3|chr3 (75314056-75314163) | |
| 952-1099, gnl|tetNig1|chr5 (3609380-3609277) | |
| 952-1099, gnl|xenTro1|scaffold_1085 (252328-252221) |
| Aligned organism(s): 90 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 130-257, gnl|bosTau2|chr15 (48890389-48890516) | |
| 130-257, gnl|canFam2|chr18 (45247593-45247459) | |
| 130-257, gnl|danRer3|chr7 (28891692-28891559) | |
| 130-257, gnl|echTel1|scaffold_144869 (717-849) | |
| 130-257, gnl|fr1|chrUn (158980816-158980682) | |
| 130-257, gnl|galGal2|chr5 (20156932-20156798) | |
| 130-257, gnl|hg17|chr11 (47403246-47403380) | |
| 130-257, gnl|Hg17|chr11 (47403375-47403248) | |
| 130-257, gnl|loxAfr1|scaffold_199672 (1233-1099) | |
| 130-257, gnl|mm7|chr2 (90905824-90905690) | |
| 130-257, gnl|Mm7|chr2 (90905693-90905820) | |
| 130-257, gnl|monDom2|scaffold_33 (13284227-13284361) | |
| 130-257, gnl|panTro1|chr9 (47922232-47922366) | |
| 130-257, gnl|rheMac2|chr14 (24693713-24693579) | |
| 130-257, gnl|rn3|chr3 (75311021-75310887) | |
| 130-257, gnl|tetNig1|chr5 (3610203-3610331) | |
| 130-257, gnl|xenTro1|scaffold_1085 (255035-255168) | |
| 425-575, gnl|bosTau2|chr15 (48891495-48891645) | |
| 425-575, gnl|canFam2|chrX (54726254-54726118) | |
| 425-575, gnl|danRer3|chr7 (28893687-28893823) | |
| 425-575, gnl|dasNov1|scaffold_48451 (14848-14714) | |
| 425-575, gnl|echTel1|scaffold_306857 (8806-8670) | |
| 425-575, gnl|fr1|chrUn (158980981-158981117) | |
| 425-575, gnl|galGal2|chr5 (20159089-20159225) | |
| 425-575, gnl|Hg17|chr11 (47402311-47402161) | |
| 425-575, gnl|hg17|chr9 (19017295-19017429) | |
| 425-575, gnl|loxAfr1|scaffold_11989 (28099-27963) | |
| 425-575, gnl|mm7|chr2 (90906621-90906757) | |
| 425-575, gnl|Mm7|chr2 (90906620-90906770) | |
| 425-575, gnl|monDom2|scaffold_3 (123404773-123404637) | |
| 425-575, gnl|oryCun1|scaffold_199379 (4107-4238) | |
| 425-575, gnl|panTro1|chr11 (19289724-19289858) | |
| 425-575, gnl|rheMac2|chr15 (57954939-57954803) | |
| 425-575, gnl|rn3|chr3 (75311895-75312031) | |
| 425-575, gnl|tetNig1|chr5 (3610038-3609902) | |
| 425-575, gnl|xenTro1|scaffold_1085 (253538-253402) | |
| 703-856, gnl|bosTau2|chr15 (48892306-48892459) | |
| 703-856, gnl|canFam2|chr18 (45249520-45249371) | |
| 703-856, gnl|canFam2|chrX (54725970-54725823) | |
| 703-856, gnl|danRer3|chr7 (28894320-28894173) | |
| 703-856, gnl|danRer3|chr7 (28894175-28894320) | |
| 703-856, gnl|dasNov1|scaffold_11277 (5271-5051) | |
| 703-856, gnl|dasNov1|scaffold_11277 (5033-5264) | |
| 703-856, gnl|echTel1|scaffold_306857 (7930-8079) | |
| 703-856, gnl|echTel1|scaffold_306857 (8079-7932) | |
| 703-856, gnl|fr1|chrUn (158981414-158981265) | |
| 703-856, gnl|fr1|chrUn (158981265-158981412) | |
| 703-856, gnl|galGal2|chr5 (20159840-20159691) | |
| 703-856, gnl|galGal2|chr5 (20159691-20159835) | |
| 703-856, gnl|hg17|chr11 (47400700-47400849) | |
| 703-856, gnl|Hg17|chr11 (47400855-47400701) | |
| 703-856, gnl|hg17|chr9 (19017569-19017716) | |
| 703-856, gnl|loxAfr1|scaffold_4277 (49168-49387) | |
| 703-856, gnl|loxAfr1|scaffold_4277 (49405-49170) | |
| 703-856, gnl|mm7|chr2 (90907779-90907630) | |
| 703-856, gnl|mm7|chr2 (90907630-90907776) | |
| 703-856, gnl|Mm7|chr2 (90907623-90907776) | |
| 703-856, gnl|monDom2|scaffold_3 (123404489-123404342) | |
| 703-856, gnl|monDom2|scaffold_33 (13282462-13282611) | |
| 703-856, gnl|oryCun1|scaffold_199379 (5041-4892) | |
| 703-856, gnl|oryCun1|scaffold_199379 (4892-5039) | |
| 703-856, gnl|panTro1|chr11 (19289998-19290145) | |
| 703-856, gnl|panTro1|chr9 (47919674-47919823) | |
| 703-856, gnl|rheMac2|chr14 (24695951-24695802) | |
| 703-856, gnl|rheMac2|chr15 (57954655-57954510) | |
| 703-856, gnl|rn3|chr3 (75313111-75312962) | |
| 703-856, gnl|rn3|chr3 (75312962-75313109) | |
| 703-856, gnl|tetNig1|chr5 (3609605-3609754) | |
| 703-856, gnl|tetNig1|chr5 (3609754-3609607) | |
| 703-856, gnl|xenTro1|scaffold_1085 (252924-253073) | |
| 703-856, gnl|xenTro1|scaffold_1085 (253073-252929) | |
| 952-1099, gnl|bosTau2|chr15 (48893644-48893791) | |
| 952-1099, gnl|canFam2|chrX (54725727-54725620) | |
| 952-1099, gnl|danRer3|chr7 (28894507-28894609) | |
| 952-1099, gnl|dasNov1|scaffold_62333 (8801-8709) | |
| 952-1099, gnl|echTel1|scaffold_306857 (6853-6751) | |
| 952-1099, gnl|fr1|chrUn (158981661-158981763) | |
| 952-1099, gnl|galGal2|chr5 (20160600-20160707) | |
| 952-1099, gnl|Hg17|chr11 (47398538-47398391) | |
| 952-1099, gnl|hg17|chr9 (19017812-19017899) | |
| 952-1099, gnl|loxAfr1|scaffold_4277 (48982-48904) | |
| 952-1099, gnl|mm7|chr2 (90908725-90908832) | |
| 952-1099, gnl|Mm7|chr2 (90908724-90908871) | |
| 952-1099, gnl|monDom2|scaffold_3 (123404246-123404139) | |
| 952-1099, gnl|oryCun1|scaffold_185845 (87-194) | |
| 952-1099, gnl|panTro1|chr11 (19290241-19290328) | |
| 952-1099, gnl|rheMac2|chr15 (57954415-57954308) | |
| 952-1099, gnl|rn3|chr3 (75314056-75314163) | |
| 952-1099, gnl|tetNig1|chr5 (3609380-3609277) | |
| 952-1099, gnl|xenTro1|scaffold_1085 (252328-252221) |
| Expressed library(ies): 27 entry(ies) | More info |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
| elu (0.770713) | |
| fce (0.543183) | |
| col (0.390016) | |
| nco (0.323468) | |
| cli (0.305623) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |
| Expressed library(ies): 27 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| fce (0.543183) | |
| col (0.390016) | |
| nco (0.323468) | |
| cli (0.305623) | |
| ese (0.253004) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| med (0.232504) | |
| jca (0.22792) | |
| nms (0.213858) | |
| mas (0.210305) | |
| ill (0.175593) | |
| nje (0.16592) | |
| csp (0.161186) | |
| ctl (0.153069) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| cov (0.132153) | |
| cly (0.120642) | |
| ecc (0.115035) | |
| nbm (0.0993246) | |
| eje (0.0988338) |