Non-Coding RNA Search

Ss1.1-Utr1-UTR010047A04.5

Sequence:


               
               TTGCGGTGCCCATTGGCTTGGCTGCGGTACCTCCTGCCGCGTCTCTTTTTGGAGAAGCGC
AGTCATTGGCGCCGGGGCTTGGTGGTCGCCGGTGAGCGGGCAGGGTGGGCCGGGGCTGCT
GTGTGGTTGGGAGGCCGCGGTCTCTGCTCAGTGGAGCGGCGTTGAGCACCCGGCCAGCGG
TTTTGGAGAAGCGCAGTCATTGGCGCCGGGGCTTGGTGCCCCACGTTGAGGATCTCGAGC
CTGGGACAATGGTGTGCATTCCCTGCATTGTCATTCCAGTTCTGCTCTGGGTCTACAAAA
AATTCCTGGAACCATATATATACCCTCTCATCTCCCCCTTTGTTAGCCGTATGTGGCCTA
AGAAAGCTGTACGAGACTGCAATGATAAAAACAAAGGCAAAGTGGACTATAAGGGTGCAG
ACATAAATGGATTACCAACAAGAGGACCAACAGAAATCTGTGATAAAAAGAAAGACTAAA
GTGGTTGTCCCAAAGGATCTCATTGTTTTAAAAATGGACCTGATAATATGAAGCATCTTG
TTTATAATTGTCACTGATCTTTTTCCCTAAGACCAGAATCGGGATAGATAGTTTAGATAT
TTACCTGACACTAATCAGAAATCCCTGGTATTTGTATTTAAAATGTAGTTAGTTATATTT
AATGATCTCATTCCTGAGTTCTTTTTCATTAATGTAGATTTCTTTTCTTGCAGTTTTTAA
AATCTGAATAAATAGAAGGTTTGTGCAAGTAGACACTGTTACTAAATCGGTACCTAAAAA
TCCTTGGGCCTCTAGCTTTTATTCAGGCTCTTCAAATTTGAGGAGTATAATTTTACTGTG
AAACAATGCAATGAGACTGCAGTGAAATGAAAGGTAGTTTTTGGAGATGATAAGACTTGA
AACAAAGATGTAATTACTGTCCAACTCAGTGGAGCAGCTTATCTGTAAGAGTAGTAATTA
CTGTTTATTGCTCTAAGGAAGAGAGAGAAAAAAGTTAGTAGGAGAAACTTCTTTGAAAAA
TGGAACATCTTTCACATAAATGTCTAATATATATTATGAAATTATAATTATTGTTGCATT
CCTTCTACTCTAAGAATGTATTAAATACTCAGTTTAAAAAAAAAAAAATTTTTTCTTTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGCGGTGCCCATTGGCTTGGCTGCGGTACCTCCTGCCGCGTCTCTTTTTGGAGAAGCGC
AGTCATTGGCGCCGGGGCTTGGTGGTCGCCGGTGAGCGGGCAGGGTGGGCCGGGGCTGCT
GTGTGGTTGGGAGGCCGCGGTCTCTGCTCAGTGGAGCGGCGTTGAGCACCCGGCCAGCGG
TTTTGGAGAAGCGCAGTCATTGGCGCCGGGGCTTGGTGCCCCACGTTGAGGATCTCGAGC
CTGGGACAATGGTGTGCATTCCCTGCATTGTCATTCCAGTTCTGCTCTGGGTCTACAAAA
AATTCCTGGAACCATATATATACCCTCTCATCTCCCCCTTTGTTAGCCGTATGTGGCCTA
AGAAAGCTGTACGAGACTGCAATGATAAAAACAAAGGCAAAGTGGACTATAAGGGTGCAG
ACATAAATGGATTACCAACAAGAGGACCAACAGAAATCTGTGATAAAAAGAAAGACTAAA
GTGGTTGTCCCAAAGGATCTCATTGTTTTAAAAATGGACCTGATAATATGAAGCATCTTG
TTTATAATTGTCACTGATCTTTTTCCCTAAGACCAGAATCGGGATAGATAGTTTAGATAT
TTACCTGACACTAATCAGAAATCCCTGGTATTTGTATTTAAAATGTAGTTAGTTATATTT
AATGATCTCATTCCTGAGTTCTTTTTCATTAATGTAGATTTCTTTTCTTGCAGTTTTTAA
AATCTGAATAAATAGAAGGTTTGTGCAAGTAGACACTGTTACTAAATCGGTACCTAAAAA
TCCTTGGGCCTCTAGCTTTTATTCAGGCTCTTCAAATTTGAGGAGTATAATTTTACTGTG
AAACAATGCAATGAGACTGCAGTGAAATGAAAGGTAGTTTTTGGAGATGATAAGACTTGA
AACAAAGATGTAATTACTGTCCAACTCAGTGGAGCAGCTTATCTGTAAGAGTAGTAATTA
CTGTTTATTGCTCTAAGGAAGAGAGAGAAAAAAGTTAGTAGGAGAAACTTCTTTGAAAAA
TGGAACATCTTTCACATAAATGTCTAATATATATTATGAAATTATAATTATTGTTGCATT
CCTTCTACTCTAAGAATGTATTAAATACTCAGTTTAAAAAAAAAAAAATTTTTTCTTTTA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|62202447|gb|AAH93004.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|62202447|gb|AAH93004.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               207-924, gnl|bosTau2|chr3 (24404747-24404009)
               

               
               207-924, gnl|Hg17|chr18 (45264140-45262226)
               

               
               207-924, gnl|Mm7|chr18 (75403942-75405028)
               


               
               349-601, gnl|bosTau2|chr28 (22529807-22529561)
               

               
               349-601, gnl|Hg17|chr16 (47062494-47062260)
               

               
               349-601, gnl|Mm7|chr19 (27846245-27846004)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               207-924, gnl|bosTau2|chr3 (24404747-24404009)
               

               
               207-924, gnl|Hg17|chr18 (45264140-45262226)
               

               
               207-924, gnl|Mm7|chr18 (75403942-75405028)
               


               
               349-601, gnl|bosTau2|chr28 (22529807-22529561)
               

               
               349-601, gnl|Hg17|chr16 (47062494-47062260)
               

               
               349-601, gnl|Mm7|chr19 (27846245-27846004)

Expressed library(ies): 55 entry(ies)

More info

Expressed library(ies): 55 entry(ies)

Help | Less info


               
               ret (2.7034)
               

               
               fco (2.0437)
               

               
               mgm (1.08206)
               

               
               kid (0.908147)
               

               
               sug (0.891039)
               

               
               lin (0.873617)
               

               
               rec (0.865351)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               mgp (0.692042)
               

               
               spc (0.566829)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               liv (0.438853)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 55 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (2.7034)
               

               
               fco (2.0437)
               

               
               mgm (1.08206)
               

               
               kid (0.908147)
               

               
               sug (0.891039)
               

               
               lin (0.873617)
               

               
               rec (0.865351)
               

               
               cki (0.826173)
               

               
               cbe (0.717703)
               

               
               mgp (0.692042)
               

               
               spc (0.566829)
               

               
               sag (0.548145)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               nco (0.485201)
               

               
               csp (0.483559)
               

               
               mga (0.480615)
               

               
               liv (0.438853)
               

               
               aor (0.390549)
               

               
               elu (0.385356)
               

               
               fty (0.351679)
               

               
               duo (0.345602)
               

               
               fhi (0.339155)
               

               
               cje (0.330469)
               

               
               eli (0.303628)
               

               
               lun (0.300978)
               

               
               ski (0.29347)
               

               
               hyp (0.285673)
               

               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               ssp (0.271039)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               cli (0.152812)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               pty (0.142714)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	207-924, gnl\|bosTau2\|chr3 (24404747-24404009)
	207-924, gnl\|Hg17\|chr18 (45264140-45262226)
	207-924, gnl\|Mm7\|chr18 (75403942-75405028)

	349-601, gnl\|bosTau2\|chr28 (22529807-22529561)
	349-601, gnl\|Hg17\|chr16 (47062494-47062260)
	349-601, gnl\|Mm7\|chr19 (27846245-27846004)

	ret (2.7034)
	fco (2.0437)
	mgm (1.08206)
	kid (0.908147)
	sug (0.891039)
	lin (0.873617)
	rec (0.865351)
	cki (0.826173)
	cbe (0.717703)
	mgp (0.692042)
	spc (0.566829)
	sag (0.548145)
	lyg (0.532411)
	pro (0.512033)
	nco (0.485201)
	csp (0.483559)
	mga (0.480615)
	liv (0.438853)
	aor (0.390549)
	elu (0.385356)
	fty (0.351679)
	duo (0.345602)
	fhi (0.339155)
	cje (0.330469)
	eli (0.303628)
	lun (0.300978)
	ski (0.29347)
	hyp (0.285673)
	cst (0.280073)
	fce (0.271592)
	ssp (0.271039)
	ste (0.270416)
	pla (0.267344)
	pgl (0.236967)
	tes (0.207814)
	fcc (0.197785)
	nlu (0.191681)
	sto (0.179824)
	gul (0.177588)
	mcp (0.170648)
	tbr (0.154178)
	cli (0.152812)
	isp (0.150376)
	fat (0.147427)
	pty (0.142714)
	nmm (0.132802)
	cov (0.132153)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	tra (0.123092)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)
	ecc (0.115035)