Non-Coding RNA Search

Ss1.1-Utr1-UTR010047A12.5

Sequence:


               
               ATATCAATATGGCGGTTGTCAGCCAGACAAAGACAGTCAGTCTGATGTGATTGAGACAAG
GGAGGTTTTCAGGGGGAGACTGGGAGATAGGGGCCTCCCCTCCCCCTTCTCCTCTTCCTG
CGCCGGCCTCAACCCCTCCCCAGTCCCCTCCCGACGGGCGCCCCACGCGGAAGACACCCC
TCCCCCTCCCGCTTTCCCCTCCTCCCTACCTCAGCCCTTCGTACTGGGACGTTGGGGAGG
GGGCTGTGCCGGGCGGAGAGAACTCAGCAAGGATTCTGAGAATGATAAAAAACACGGATC
ATCTCTAGAAAGGATATTGAGTCACCTCATGTAAAGTATGCTCAGTTCCTTTCCAGTGGT
TTTGCTGGAAACCATGTCTCACTATACAGATGAACCCAGATTTACGATAGAACAGATAGA
TCTGCTTCAGCGCCTTCGGCGTACTGGAATGACTAAACATGAAATTCTCCATGCCTTGGA
AACCTTGGACCGTCTTGATCAAGAGCATAGTGACAAGTTTGGAAGAAGGTCCAGCTATGG
AGGAGGTTCATATGGGAATAATACCAACAATGTTCCAGCATCTTCCTCGACAGCTACAGC
TTCCACACAGACCCAGCATTCAGGAATGTCGCCATCACCTAGCAACAGTTACGATACCTC
CCCACAGCCTTGTACTACCAATCAGAATGGGAGAGAGAATAACGAGCGATTATCTACATC
CAATGGAAAGATGTCACCAACTCGCTACCATGCAAATAGCATGGGTCAGAGGTCATACAG
TTTTGAAGCCTCAGAAGAGGACCTAGATGTAGATGATAAAGTAGAGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATATCAATATGGCGGTTGTCAGCCAGACAAAGACAGTCAGTCTGATGTGATTGAGACAAG
GGAGGTTTTCAGGGGGAGACTGGGAGATAGGGGCCTCCCCTCCCCCTTCTCCTCTTCCTG
CGCCGGCCTCAACCCCTCCCCAGTCCCCTCCCGACGGGCGCCCCACGCGGAAGACACCCC
TCCCCCTCCCGCTTTCCCCTCCTCCCTACCTCAGCCCTTCGTACTGGGACGTTGGGGAGG
GGGCTGTGCCGGGCGGAGAGAACTCAGCAAGGATTCTGAGAATGATAAAAAACACGGATC
ATCTCTAGAAAGGATATTGAGTCACCTCATGTAAAGTATGCTCAGTTCCTTTCCAGTGGT
TTTGCTGGAAACCATGTCTCACTATACAGATGAACCCAGATTTACGATAGAACAGATAGA
TCTGCTTCAGCGCCTTCGGCGTACTGGAATGACTAAACATGAAATTCTCCATGCCTTGGA
AACCTTGGACCGTCTTGATCAAGAGCATAGTGACAAGTTTGGAAGAAGGTCCAGCTATGG
AGGAGGTTCATATGGGAATAATACCAACAATGTTCCAGCATCTTCCTCGACAGCTACAGC
TTCCACACAGACCCAGCATTCAGGAATGTCGCCATCACCTAGCAACAGTTACGATACCTC
CCCACAGCCTTGTACTACCAATCAGAATGGGAGAGAGAATAACGAGCGATTATCTACATC
CAATGGAAAGATGTCACCAACTCGCTACCATGCAAATAGCATGGGTCAGAGGTCATACAG
TTTTGAAGCCTCAGAAGAGGACCTAGATGTAGATGATAAAGTAGAGGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61818423|ref|XP_607314.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61818423|ref|XP_607314.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               480-639, - strand, RNAz p=0.96201
               

               
               711-828, + strand, RNAz p=0.995533

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               480-639, - strand, RNAz p=0.96201
               

               
               711-828, + strand, RNAz p=0.995533

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               361-828, gnl|bosTau2|chr18 (6031520-6031987)
               

               
               361-828, gnl|Hg17|chr8 (28883479-28883946)
               

               
               361-828, gnl|Mm7|chr14 (59758448-59757981)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               361-828, gnl|bosTau2|chr18 (6031520-6031987)
               

               
               361-828, gnl|Hg17|chr8 (28883479-28883946)
               

               
               361-828, gnl|Mm7|chr14 (59758448-59757981)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               csk (0.140746)
               

               
               lyg (0.133103)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.140746)
               

               
               lyg (0.133103)

	480-639, - strand, RNAz p=0.96201
	711-828, + strand, RNAz p=0.995533

	361-828, gnl\|bosTau2\|chr18 (6031520-6031987)
	361-828, gnl\|Hg17\|chr8 (28883479-28883946)
	361-828, gnl\|Mm7\|chr14 (59758448-59757981)