Non-Coding RNA Search

Ss1.1-Utr1-UTR010047E07.5

Sequence:


               
               GGAAGTTGTCCTCGCGAAACCCCCAGGCTCTTGGGTTGGCTGCGCTGAGGTGGCGCGAAC
GGCGTCCGTGGGCCGCTTGGCGTGGTAGTCGTGACAGCGGGTCGGTGTGACGGGCTCCTG
GGTTCTGGGTGGGGACAATGGCGTCTCGGGCAGGCCCGCGAGCGGCTGGCACCGACGGCA
GCGACTTTCAGCACCGGGAGCGCGTCGCCATGCACTACCAGATGAGTGTGACCCTCAAGT
ATGAAATCAAGAAGCTGACCTACGTGCATCTGATCATATGGCTGCTGCTGGTTGCCAAGA
TGAGCGTGGGACACCTGAGGCTCTTGTCGCATGATCAGGTGGCCATGCCCTATCAGTGGG
AGTACCCCTATTTGCTGAGCATTGTGCCCTCCCTCTTGGGCCTCTTCTCCTTCCCCCGCA
ACAACATTAGCTACTTAGTGCTCTCCATGATCAGCATGGGGCTCTTTTCAATCGCTCCCC
TCATTTATGGCAGCATGGAGATGTTCCCCGCTGCCCAGCAGCTCTACCGCCATGGCAAGG
CCTACCGCTTCCTCTTTGGTTTTCCCGCCGTCTCCGTCATGTATCTGGTGTTAGTGCTGG
CAGTCCAAGTGCACGCCTGGCAGTTATACTACAGCAAGAAGCTCCTAGACTCTTGGTTCA
CCAGCACACAAGAGAAGAAGCGTAAATGAAGCCTACCTGATGGACTGCTGTGTGAGGTGA
AGCCCAAGCCTCCCATCCAATGGAGTGAGAGGGTGGAGGAGCTGTTCTAAAATCTTCTTT
GCTGATTTTGGCAGCTGCCATGTTGGCAACTAGTGCACACTAGACCCAAGTTCTGGAAAG
CCCCTTCTGTTGCCATCAGCTGGTGGCAAAACTACATTTAATTTATTCCTAGTTGGTGGA
ACTGGGTGATCCACAGCTGTGAAACAAATTTCAGCTGGTTGAAGTTGAGGTCCTTCAGGG
CTTTTCTTTTAAGACTGAGCTTTATCCTTGCCTGTGGGTCATTCTCCACTTCTATCCATG
ACCTCTTAGCCACTGAGACTAAGGGAGATAGGGAATAAATCAGATTTTCTTCAATCTGTG
GATCATGGGGCAGAAAGCATTTTGAGCTTGTCCCCCTGAATACTGGTCTCTACTGTGAAG
CATTTTAATTGAAAAGAACCTCAATAAAGTTACAACTGCCTTGTCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGTTGTCCTCGCGAAACCCCCAGGCTCTTGGGTTGGCTGCGCTGAGGTGGCGCGAAC
GGCGTCCGTGGGCCGCTTGGCGTGGTAGTCGTGACAGCGGGTCGGTGTGACGGGCTCCTG
GGTTCTGGGTGGGGACAATGGCGTCTCGGGCAGGCCCGCGAGCGGCTGGCACCGACGGCA
GCGACTTTCAGCACCGGGAGCGCGTCGCCATGCACTACCAGATGAGTGTGACCCTCAAGT
ATGAAATCAAGAAGCTGACCTACGTGCATCTGATCATATGGCTGCTGCTGGTTGCCAAGA
TGAGCGTGGGACACCTGAGGCTCTTGTCGCATGATCAGGTGGCCATGCCCTATCAGTGGG
AGTACCCCTATTTGCTGAGCATTGTGCCCTCCCTCTTGGGCCTCTTCTCCTTCCCCCGCA
ACAACATTAGCTACTTAGTGCTCTCCATGATCAGCATGGGGCTCTTTTCAATCGCTCCCC
TCATTTATGGCAGCATGGAGATGTTCCCCGCTGCCCAGCAGCTCTACCGCCATGGCAAGG
CCTACCGCTTCCTCTTTGGTTTTCCCGCCGTCTCCGTCATGTATCTGGTGTTAGTGCTGG
CAGTCCAAGTGCACGCCTGGCAGTTATACTACAGCAAGAAGCTCCTAGACTCTTGGTTCA
CCAGCACACAAGAGAAGAAGCGTAAATGAAGCCTACCTGATGGACTGCTGTGTGAGGTGA
AGCCCAAGCCTCCCATCCAATGGAGTGAGAGGGTGGAGGAGCTGTTCTAAAATCTTCTTT
GCTGATTTTGGCAGCTGCCATGTTGGCAACTAGTGCACACTAGACCCAAGTTCTGGAAAG
CCCCTTCTGTTGCCATCAGCTGGTGGCAAAACTACATTTAATTTATTCCTAGTTGGTGGA
ACTGGGTGATCCACAGCTGTGAAACAAATTTCAGCTGGTTGAAGTTGAGGTCCTTCAGGG
CTTTTCTTTTAAGACTGAGCTTTATCCTTGCCTGTGGGTCATTCTCCACTTCTATCCATG
ACCTCTTAGCCACTGAGACTAAGGGAGATAGGGAATAAATCAGATTTTCTTCAATCTGTG
GATCATGGGGCAGAAAGCATTTTGAGCTTGTCCCCCTGAATACTGGTCTCTACTGTGAAG
CATTTTAATTGAAAAGAACCTCAATAAAGTTACAACTGCCTTGTCAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|57101048|ref|XP_541776.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|57101048|ref|XP_541776.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               304-583, - strand, RNAz p=0.911446
               

               
               824-937, + strand, RNAz p=0.579234

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               304-583, - strand, RNAz p=0.911446
               

               
               824-937, + strand, RNAz p=0.579234

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_032492, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_032492, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               225-1185, gnl|bosTau2|chr22 (12004784-12005734)
               

               
               225-1185, gnl|Hg17|chr3 (9909597-9910531)
               

               
               225-1185, gnl|Mm7|chr6 (113608185-113609151)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               225-1185, gnl|bosTau2|chr22 (12004784-12005734)
               

               
               225-1185, gnl|Hg17|chr3 (9909597-9910531)
               

               
               225-1185, gnl|Mm7|chr6 (113608185-113609151)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

Help | Less info


               
               duo (0.345602)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.345602)
               

               
               pty (0.285429)
               

               
               hlv (0.278513)
               

               
               med (0.232504)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	304-583, - strand, RNAz p=0.911446
	824-937, + strand, RNAz p=0.579234

	225-1185, gnl\|bosTau2\|chr22 (12004784-12005734)
	225-1185, gnl\|Hg17\|chr3 (9909597-9910531)
	225-1185, gnl\|Mm7\|chr6 (113608185-113609151)

	duo (0.345602)
	pty (0.285429)
	hlv (0.278513)
	med (0.232504)
	aor (0.195274)
	ill (0.175593)
	sin (0.174948)
	rec (0.17307)
	fhi (0.169578)
	cje (0.165235)
	nco (0.161734)
	spl (0.143184)
	lnt (0.142308)
	nca (0.136874)
	pla (0.133672)
	lyg (0.133103)
	nmm (0.132802)
	cov (0.132153)
	cly (0.120642)
	spc (0.113366)
	eje (0.0988338)