Ss1.1-Utr1-UTR010047F04.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTGGTGCAAAAGCGGGCCCTAGCAGCCGCAGACGCAGTGGGCCTGAGCCCCGGCTCGGT TTCAGAGTTGGAAGCTTTGCAGCTTTGGTAGGCGACCGCTGTTATGACGGCCCAGGGGAG CTTGGTGGCTAACCGAGGCCGGCGCTTCAAGTGGGCGATTGAGCTGAGCGGTCCTGGAGG AGGCAGCAGGGGCCGAAGTGACCGGGGCGGTGGCCAGGGAGACTCGCTGTACCCCGTTGG TTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACAGACCGGATCCTAGTGGA GAAGCGCTGCTGGGACATCGCCCTGGGTCCCCTCAAACAGATTCCCATGAACCTCTTCAT CATGTACATGGCAGGCAATACCATCTCCATCTTCCCTACTATGATGGTGTGTATGATGGC TTGGCGACCTATTCAGGCACTTATGGCCATTTCAGCCACTTTCAAGATGCTAGAAAGTTC AAGCCAGAAGTTTCTTCAGGGTTTGGTGTACCTCATTGGGAACCTTATGGGTCTGGCATT GGCTGTGTATAAGTGCCAGTCAATGGGACTGTTGCCTACACATGCATCAGATTGGTTAGC CTTCATTGAGCCCCCTGAGAGGATGGAGTTCAGTGGTGGAGGACTGCTTTTGTGAACCTG AGAAAACAGCATGTGGTGCTATGTATTTGGATCTCATTTACAACCTTCTTTATGCCCAGT GGCTCCTCCTCAGCATACTAACCCTTAACATTATCACTTGCTGAAAAGAACCCAAAGTTG TCTTTTCTCTCTGGTGAGGAGACAAAGCCTAGAAAGACAATGTGTACATATCAGTACAAA TACAAAGAAACTATACCACAACCTTGACTGAAAATAATGTAGAAAACTTTATTTATGTTT CCAGTATAGAGCAAAACAACAAATAAACCCATAACTATGTAAACAAAAGAATGGTTGCTG CCAAATCAAGAACCACAGCAGCGTCTCCTTTTAATAAATTAAATGGTTGAGAACAATGCT TTTTTAAAAAGTTGCGCAAGTTTCCTTTAAATCTATCCTCCTCAATATTTCACTTCTATT TAACACAAGCTGGGATGTAAAAATTCTATTGGAGATACTTGTGGAAGATGTGAGAAACTA ATGCTGGATTCAGATTATACATGATGAAAAGAAAAATAAATCTGACAAATAGAGCACATT ACCGTGTAATTGCTACTTTAATATGCACAAAAAATGGATTTTTAACACATTTGGGGGAAT GAGGATTGGCGGAATCATTGGGGTCACAGGATTCTGAGGCAATGGAAGATATAAAATAGT GATCTTTCCCCTGCCAAGAGGAACCTGGCACCTGTCAAACAGATGCTGCAATTCAAACTT AAGCTTTTAAGATAGCTATAAAAGGCAGAGGGCCAGCAGCTGGAGAATGAATATTGTCAT AACCTGCCCTGGTAAAGTCATAGCTGAGACTCAAAAGCTGGATCTCATTCAAAAGGCAGG AGGAGGTCTTTCTCTTCCTTCTTGAAACAAAAGCCCCTTCCCCTAAGGTGCATTCTCATC ACGTTTTCGGTATTGCTTTACTTGCAGTGATTACAAGAGACAAGACATTCTGCAGACAAA CAACATAAGCAACACATAGACATGAAATGCCCTAGACAGAGATGAGTATATATCTGGCCT AATAACCACTTCCCCATGTAACAGTGATTGTGTTTTAGGGGCTGAAGTAGGGGCTATATT AGTAGCCACTAATTCCCTTATCCCTTTAAAGGATTCTTAAAGAGCTTCAGCCACAAAAAG CTCTTCTAAAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTGGTGCAAAAGCGGGCCCTAGCAGCCGCAGACGCAGTGGGCCTGAGCCCCGGCTCGGT TTCAGAGTTGGAAGCTTTGCAGCTTTGGTAGGCGACCGCTGTTATGACGGCCCAGGGGAG CTTGGTGGCTAACCGAGGCCGGCGCTTCAAGTGGGCGATTGAGCTGAGCGGTCCTGGAGG AGGCAGCAGGGGCCGAAGTGACCGGGGCGGTGGCCAGGGAGACTCGCTGTACCCCGTTGG TTACTTGGACAAGCAAGTGCCTGATACCAGCGTGCAAGAGACAGACCGGATCCTAGTGGA GAAGCGCTGCTGGGACATCGCCCTGGGTCCCCTCAAACAGATTCCCATGAACCTCTTCAT CATGTACATGGCAGGCAATACCATCTCCATCTTCCCTACTATGATGGTGTGTATGATGGC TTGGCGACCTATTCAGGCACTTATGGCCATTTCAGCCACTTTCAAGATGCTAGAAAGTTC AAGCCAGAAGTTTCTTCAGGGTTTGGTGTACCTCATTGGGAACCTTATGGGTCTGGCATT GGCTGTGTATAAGTGCCAGTCAATGGGACTGTTGCCTACACATGCATCAGATTGGTTAGC CTTCATTGAGCCCCCTGAGAGGATGGAGTTCAGTGGTGGAGGACTGCTTTTGTGAACCTG AGAAAACAGCATGTGGTGCTATGTATTTGGATCTCATTTACAACCTTCTTTATGCCCAGT GGCTCCTCCTCAGCATACTAACCCTTAACATTATCACTTGCTGAAAAGAACCCAAAGTTG TCTTTTCTCTCTGGTGAGGAGACAAAGCCTAGAAAGACAATGTGTACATATCAGTACAAA TACAAAGAAACTATACCACAACCTTGACTGAAAATAATGTAGAAAACTTTATTTATGTTT CCAGTATAGAGCAAAACAACAAATAAACCCATAACTATGTAAACAAAAGAATGGTTGCTG CCAAATCAAGAACCACAGCAGCGTCTCCTTTTAATAAATTAAATGGTTGAGAACAATGCT TTTTTAAAAAGTTGCGCAAGTTTCCTTTAAATCTATCCTCCTCAATATTTCACTTCTATT TAACACAAGCTGGGATGTAAAAATTCTATTGGAGATACTTGTGGAAGATGTGAGAAACTA ATGCTGGATTCAGATTATACATGATGAAAAGAAAAATAAATCTGACAAATAGAGCACATT ACCGTGTAATTGCTACTTTAATATGCACAAAAAATGGATTTTTAACACATTTGGGGGAAT GAGGATTGGCGGAATCATTGGGGTCACAGGATTCTGAGGCAATGGAAGATATAAAATAGT GATCTTTCCCCTGCCAAGAGGAACCTGGCACCTGTCAAACAGATGCTGCAATTCAAACTT AAGCTTTTAAGATAGCTATAAAAGGCAGAGGGCCAGCAGCTGGAGAATGAATATTGTCAT AACCTGCCCTGGTAAAGTCATAGCTGAGACTCAAAAGCTGGATCTCATTCAAAAGGCAGG AGGAGGTCTTTCTCTTCCTTCTTGAAACAAAAGCCCCTTCCCCTAAGGTGCATTCTCATC ACGTTTTCGGTATTGCTTTACTTGCAGTGATTACAAGAGACAAGACATTCTGCAGACAAA CAACATAAGCAACACATAGACATGAAATGCCCTAGACAGAGATGAGTATATATCTGGCCT AATAACCACTTCCCCATGTAACAGTGATTGTGTTTTAGGGGCTGAAGTAGGGGCTATATT AGTAGCCACTAATTCCCTTATCCCTTTAAAGGATTCTTAAAGAGCTTCAGCCACAAAAAG CTCTTCTAAAAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 341-458, - strand, RNAz p=0.887754 | |
| 341-458, - strand, RNAz p=0.785946 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 341-458, - strand, RNAz p=0.887754 | |
| 341-458, - strand, RNAz p=0.785946 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 12-190, gnl|bosTau2|chr10 (17364437-17364260) | |
| 12-190, gnl|Hg17|chr15 (32304519-32304694) | |
| 12-190, gnl|Mm7|chr2 (112218245-112218056) | |
| 303-458, gnl|bosTau2|chr10 (17362177-17362022) | |
| 303-458, gnl|canFam2|chr30 (3852104-3851976) | |
| 303-458, gnl|danRer3|chrNA (79187159-79187031) | |
| 303-458, gnl|dasNov1|scaffold_40327 (3310-3426) | |
| 303-458, gnl|echTel1|scaffold_301365 (1265-1394) | |
| 303-458, gnl|fr1|chrUn (219782563-219782435) | |
| 303-458, gnl|hg17|chr15 (32307172-32307301) | |
| 303-458, gnl|Hg17|chr15 (32307184-32307339) | |
| 303-458, gnl|loxAfr1|scaffold_347 (40914-40788) | |
| 303-458, gnl|mm7|chr2 (112214558-112214430) | |
| 303-458, gnl|Mm7|chr2 (112214545-112214390) | |
| 303-458, gnl|monDom2|scaffold_12 (12071154-12071283) | |
| 303-458, gnl|oryCun1|scaffold_213414 (40356-40229) | |
| 303-458, gnl|panTro1|chr16 (31943831-31943959) | |
| 303-458, gnl|rheMac2|chr7 (12471620-12471748) | |
| 303-458, gnl|rn3|chr3 (98109826-98109698) | |
| 303-458, gnl|tetNig1|chrUn_random (92585875-92586002) | |
| 303-458, gnl|xenTro1|scaffold_339 (1163847-1163718) | |
| 615-1811, gnl|bosTau2|chr10 (17361300-17360148) | |
| 615-1811, gnl|Hg17|chr15 (32309241-32310426) | |
| 615-1811, gnl|Mm7|chr2 (112213597-112212516) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 12-190, gnl|bosTau2|chr10 (17364437-17364260) | |
| 12-190, gnl|Hg17|chr15 (32304519-32304694) | |
| 12-190, gnl|Mm7|chr2 (112218245-112218056) | |
| 303-458, gnl|bosTau2|chr10 (17362177-17362022) | |
| 303-458, gnl|canFam2|chr30 (3852104-3851976) | |
| 303-458, gnl|danRer3|chrNA (79187159-79187031) | |
| 303-458, gnl|dasNov1|scaffold_40327 (3310-3426) | |
| 303-458, gnl|echTel1|scaffold_301365 (1265-1394) | |
| 303-458, gnl|fr1|chrUn (219782563-219782435) | |
| 303-458, gnl|hg17|chr15 (32307172-32307301) | |
| 303-458, gnl|Hg17|chr15 (32307184-32307339) | |
| 303-458, gnl|loxAfr1|scaffold_347 (40914-40788) | |
| 303-458, gnl|mm7|chr2 (112214558-112214430) | |
| 303-458, gnl|Mm7|chr2 (112214545-112214390) | |
| 303-458, gnl|monDom2|scaffold_12 (12071154-12071283) | |
| 303-458, gnl|oryCun1|scaffold_213414 (40356-40229) | |
| 303-458, gnl|panTro1|chr16 (31943831-31943959) | |
| 303-458, gnl|rheMac2|chr7 (12471620-12471748) | |
| 303-458, gnl|rn3|chr3 (98109826-98109698) | |
| 303-458, gnl|tetNig1|chrUn_random (92585875-92586002) | |
| 303-458, gnl|xenTro1|scaffold_339 (1163847-1163718) | |
| 615-1811, gnl|bosTau2|chr10 (17361300-17360148) | |
| 615-1811, gnl|Hg17|chr15 (32309241-32310426) | |
| 615-1811, gnl|Mm7|chr2 (112213597-112212516) |
| Expressed library(ies): 61 entry(ies) | More info |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
| aor (1.17165) | |
| pro (1.02407) | |
| fco (0.78604) | |
| ski (0.733676) | |
| liv (0.585137) | |
| sag (0.548145) | |
| ste (0.540833) | |
| fbs (0.526039) | |
| mga (0.480615) | |
| spc (0.453463) | |
| fat (0.442282) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| ton (0.351) | |
| sin (0.349895) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| spl (0.286369) | |
| pty (0.285429) | |
| nca (0.273748) | |
| kid (0.259471) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 61 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (1.17165) | |
| pro (1.02407) | |
| fco (0.78604) | |
| ski (0.733676) | |
| liv (0.585137) | |
| sag (0.548145) | |
| ste (0.540833) | |
| fbs (0.526039) | |
| mga (0.480615) | |
| spc (0.453463) | |
| fat (0.442282) | |
| lin (0.436808) | |
| lyg (0.399308) | |
| ova (0.387397) | |
| nlu (0.383362) | |
| ton (0.351) | |
| sin (0.349895) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| isp (0.300752) | |
| bfe (0.299715) | |
| spl (0.286369) | |
| pty (0.285429) | |
| nca (0.273748) | |
| kid (0.259471) | |
| thg (0.253582) | |
| bla (0.248694) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| jca (0.22792) | |
| nms (0.213858) | |
| fli (0.202881) | |
| eje (0.197668) | |
| mgm (0.180343) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| nje (0.16592) | |
| cje (0.165235) | |
| cki (0.165235) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lun (0.150489) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ret (0.128733) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| cbl (0.114797) | |
| nbm (0.0993246) | |
| jej (0.0989218) |