Ss1.1-Utr1-UTR010047G08.5
|
GCACTCCTGCAGCCAAGTCTGGGAGGGTTTCCTGGACAGAGGTCCTCGTGGCTGCTGCCT
TAAGACGTGCAGCCCAGGCCACAGCTGACAGTGCTCTCTGACCCAGGCCCACCACAGGCA
GCAAGAGCAGCAGCAGCCGTAGTCCCAGCCGGTGCAGCAGCATGGAGCTTTGGGGGCCCT
ACTTGCTCCTCTGCCTCTTCTCCCTTCTGACCCAGGTCACTGCTGAGACACCTACCCCCA
AGGTCAAGAAGCCTGCAAATGCCAAGAAAGATGCCGCAAGCCCAAAGATACTTGAGGAGC
TCAAGACCCAGCTGGACACTCTGGCCCAGGAGGTGGCCCTGCTGAAGGAGCAGCAGGCCC
TGCAGACGGTCTGCCTGAAAGGCACCAAGGTGCACATGAAGTGCTTCCTGGCCTTCGTCC
AGGCGAAGACTTTCCACGAGGCGAGCGAGGACTGTATCTCACGCGGGGGCACCCTGGGCA
CCCCTAAGACAGGCTCGGAGAACGATGCCCTGTACGAGTACCTACGGCAGAGCGTGGGCG
CAGAGGCTGAGGTCTGGCTGGGCTTCAACGATATGGCGGATGAGGGCGCCTGGGTGGACA
TGACCGGCGGCCACATCGCCTACAAGAACTGGGAGACAGAGATCACTGCGCAGCCTGATG
GCGGCAAGGTGGAGAACTGCGCCGCCCTGGCTGGCGCGGCCAACGGCAAGTGGTTCGACA
AGCGCTGCCGGGACAAGCTGCCCTACGTCTGCCAGTTCGCCATCGTGTAGCGGGCGAGGC
GGGGCGGGGCGGGGCGGGGCGGGGCGGGGCCGGGGCCGGGGCGGGGCGAGCAGGAGGAGG
ATCCTGAGCCGCTGGAGGAGCAGTGCTGGGACTTTCAGGCATCCCCGCCACGCTGGGAGC
GGAGCCTTCTTTTGCAAATAAAGTGGGTGCAGCTTAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCACTCCTGCAGCCAAGTCTGGGAGGGTTTCCTGGACAGAGGTCCTCGTGGCTGCTGCCT
TAAGACGTGCAGCCCAGGCCACAGCTGACAGTGCTCTCTGACCCAGGCCCACCACAGGCA
GCAAGAGCAGCAGCAGCCGTAGTCCCAGCCGGTGCAGCAGCATGGAGCTTTGGGGGCCCT
ACTTGCTCCTCTGCCTCTTCTCCCTTCTGACCCAGGTCACTGCTGAGACACCTACCCCCA
AGGTCAAGAAGCCTGCAAATGCCAAGAAAGATGCCGCAAGCCCAAAGATACTTGAGGAGC
TCAAGACCCAGCTGGACACTCTGGCCCAGGAGGTGGCCCTGCTGAAGGAGCAGCAGGCCC
TGCAGACGGTCTGCCTGAAAGGCACCAAGGTGCACATGAAGTGCTTCCTGGCCTTCGTCC
AGGCGAAGACTTTCCACGAGGCGAGCGAGGACTGTATCTCACGCGGGGGCACCCTGGGCA
CCCCTAAGACAGGCTCGGAGAACGATGCCCTGTACGAGTACCTACGGCAGAGCGTGGGCG
CAGAGGCTGAGGTCTGGCTGGGCTTCAACGATATGGCGGATGAGGGCGCCTGGGTGGACA
TGACCGGCGGCCACATCGCCTACAAGAACTGGGAGACAGAGATCACTGCGCAGCCTGATG
GCGGCAAGGTGGAGAACTGCGCCGCCCTGGCTGGCGCGGCCAACGGCAAGTGGTTCGACA
AGCGCTGCCGGGACAAGCTGCCCTACGTCTGCCAGTTCGCCATCGTGTAGCGGGCGAGGC
GGGGCGGGGCGGGGCGGGGCGGGGCGGGGCCGGGGCCGGGGCGGGGCGAGCAGGAGGAGG
ATCCTGAGCCGCTGGAGGAGCAGTGCTGGGACTTTCAGGCATCCCCGCCACGCTGGGAGC
GGAGCCTTCTTTTGCAAATAAAGTGGGTGCAGCTTAAAAAAAAAAAAA
|
|
gi|61819239|ref|XP_593864.1| |
Protein identifier
|
gi|61819239|ref|XP_593864.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-135, gnl|bosTau2|chr9 (21552615-21552748) |
|
1-135, gnl|canFam2|chr20 (46332869-46332700) |
|
1-135, gnl|echTel1|scaffold_323359 (37307-37508) |
|
1-135, gnl|galGal2|chr2 (42189849-42189571) |
|
1-135, gnl|hg17|chr3 (45042664-45042853) |
|
1-135, gnl|Hg17|chr3 (45042714-45042859) |
|
1-135, gnl|loxAfr1|scaffold_914 (106836-107018) |
|
1-135, gnl|mm7|chr9 (122856258-122856436) |
|
1-135, gnl|Mm7|chr9 (122856321-122856442) |
|
1-135, gnl|monDom2|scaffold_7 (65653757-65653935) |
|
1-135, gnl|oryCun1|scaffold_176268 (104700-104886) |
|
1-135, gnl|panTro1|chr2 (46362273-46362462) |
|
1-135, gnl|rheMac2|chr2 (91505899-91505710) |
|
1-135, gnl|rn3|chr8 (127924213-127924395) |
| |
|
146-270, gnl|bosTau2|chr9 (21552732-21552856) |
|
146-270, gnl|Hg17|chr3 (45042831-45042967) |
|
146-270, gnl|Mm7|chr9 (122856430-122856550) |
| |
|
369-799, gnl|bosTau2|chr9 (21558042-21558472) |
|
369-799, gnl|Hg17|chr3 (45052019-45052460) |
|
369-799, gnl|Mm7|chr9 (122862144-122862596) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-135, gnl|bosTau2|chr9 (21552615-21552748) |
|
1-135, gnl|canFam2|chr20 (46332869-46332700) |
|
1-135, gnl|echTel1|scaffold_323359 (37307-37508) |
|
1-135, gnl|galGal2|chr2 (42189849-42189571) |
|
1-135, gnl|hg17|chr3 (45042664-45042853) |
|
1-135, gnl|Hg17|chr3 (45042714-45042859) |
|
1-135, gnl|loxAfr1|scaffold_914 (106836-107018) |
|
1-135, gnl|mm7|chr9 (122856258-122856436) |
|
1-135, gnl|Mm7|chr9 (122856321-122856442) |
|
1-135, gnl|monDom2|scaffold_7 (65653757-65653935) |
|
1-135, gnl|oryCun1|scaffold_176268 (104700-104886) |
|
1-135, gnl|panTro1|chr2 (46362273-46362462) |
|
1-135, gnl|rheMac2|chr2 (91505899-91505710) |
|
1-135, gnl|rn3|chr8 (127924213-127924395) |
| |
|
146-270, gnl|bosTau2|chr9 (21552732-21552856) |
|
146-270, gnl|Hg17|chr3 (45042831-45042967) |
|
146-270, gnl|Mm7|chr9 (122856430-122856550) |
| |
|
369-799, gnl|bosTau2|chr9 (21558042-21558472) |
|
369-799, gnl|Hg17|chr3 (45052019-45052460) |
|
369-799, gnl|Mm7|chr9 (122862144-122862596) |
|
jca (2.39316) |
|
cov (0.925069) |
|
cly (0.603209) |
|
nep (0.551775) |
|
nmm (0.531209) |
|
mcp (0.511945) |
|
nje (0.49776) |
|
nco (0.485201) |
|
med (0.465008) |
|
mas (0.42061) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
eje (0.0988338) |
|
jca (2.39316) |
|
cov (0.925069) |
|
cly (0.603209) |
|
nep (0.551775) |
|
nmm (0.531209) |
|
mcp (0.511945) |
|
nje (0.49776) |
|
nco (0.485201) |
|
med (0.465008) |
|
mas (0.42061) |
|
mgm (0.180343) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fhi (0.169578) |
|
cli (0.152812) |
|
cag (0.151194) |
|
fat (0.147427) |
|
lnt (0.142308) |
|
pla (0.133672) |
|
ute (0.132784) |
|
eru (0.120048) |
|
pgl (0.118483) |
|
cty (0.10408) |
|
eje (0.0988338) |
