Non-Coding RNA Search

Ss1.1-Utr1-UTR010048A08.5

Sequence:


               
               AGCTCTTTAAGCGGCGGGACTTCTGGTTAACGTCGTCTGCGGCCTCCGGAAGGGGAAGTT
CGCCGCCGAACGCTCCCTCGCTCGTCCGAATTCGGTGGCGCCACGTCCGCGGGTCTCCGC
CTTCTGCACCGGGGCTGGGGCGGCTCCGCCTCGACACCTTCCACTCACCCAGGAGGCCGC
GTCGGAGGGGGCCGGGACCGGGAGTCGGACGGCTGTGCACATCCCGGCCACGACGAGGCG
AAGATGTCGGACATCGGGGACTGGTTCAGGAGTATCCCGGCTATCACGCGCTATTGGTTC
GCCGCCACCGTTGCAGTGCCCTTAGTCGGCAAACTCGGTCTCATCAGCCCGGCCTATTTC
TTCCTCTGGCCTGAAGCCTTCCTTTATCGCTTCCAGATTTGGAGGCCGATCACTGCCACC
TTTTATTTCCCCGTGGGTCCAGGAACTGGATTTCTTTATTTGGTCAATTTATACTTCTTA
TATCAGTATTCTACACGACTCGAAACAGGAGCTTTCGATGGGAGGCCGGCCGACTATTTA
TTCATGCTCCTCTTTAACTGGATTTGCATTGTGATTACTGGCTTAGCAATGGATATGCAG
TTGCTGATGATCCCTCTGATCATGTCAGTGCTTTACGTCTGGGCCCAGCTGAACAGAGAC
ATGATTGTATCGTTTTGGTTTGGAACAAGATTTAAGGCCTGTTATTTACCTTGGGTTATC
CTTGGATTCAACTATATCATCGGAGGCTCGGTCATCAACGAGCTTATCGGAAATCTCGTT
GGACACCTTTATTTCTTCCTCATGTTCAGATACCCAATGGACTTGGGAGGAAGAAACTTT
CTGTCCACGCCTCAGTTTTTGTACCGCTGGCTGCCCAGCAGGAGAGGAGGGGTGTCAGGG
TTTGGCGTGCCCCCTGCTAGCATGCGGCGAGCCGCCGATCAGAACGGCGGCGGCGGGAGA
CACAACTGGGGACAGGGCTTTCGCCTCGGGGACCAGTGAAGGAGTGGCCTCTGGCCCGCC
CACCAGCCTCTCCGCTCCGATGAAGTCTCCCAGTGCTGGGTGACCTTACCCACCGAGTTC
TAGCCGATGCTGTTGGACCCAACCCACACTGAATGTAGTCTTTCAGTCCAAGACAGCAGT
TTTTTTAAATCCTGAAGAAAAAAAATATAAGTGTTCAAAAAAAAAAAAAAAAAAAAAAAA
AGTCCTTACTGCTGAGAAGAACAAATATCAGCTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCTTTAAGCGGCGGGACTTCTGGTTAACGTCGTCTGCGGCCTCCGGAAGGGGAAGTT
CGCCGCCGAACGCTCCCTCGCTCGTCCGAATTCGGTGGCGCCACGTCCGCGGGTCTCCGC
CTTCTGCACCGGGGCTGGGGCGGCTCCGCCTCGACACCTTCCACTCACCCAGGAGGCCGC
GTCGGAGGGGGCCGGGACCGGGAGTCGGACGGCTGTGCACATCCCGGCCACGACGAGGCG
AAGATGTCGGACATCGGGGACTGGTTCAGGAGTATCCCGGCTATCACGCGCTATTGGTTC
GCCGCCACCGTTGCAGTGCCCTTAGTCGGCAAACTCGGTCTCATCAGCCCGGCCTATTTC
TTCCTCTGGCCTGAAGCCTTCCTTTATCGCTTCCAGATTTGGAGGCCGATCACTGCCACC
TTTTATTTCCCCGTGGGTCCAGGAACTGGATTTCTTTATTTGGTCAATTTATACTTCTTA
TATCAGTATTCTACACGACTCGAAACAGGAGCTTTCGATGGGAGGCCGGCCGACTATTTA
TTCATGCTCCTCTTTAACTGGATTTGCATTGTGATTACTGGCTTAGCAATGGATATGCAG
TTGCTGATGATCCCTCTGATCATGTCAGTGCTTTACGTCTGGGCCCAGCTGAACAGAGAC
ATGATTGTATCGTTTTGGTTTGGAACAAGATTTAAGGCCTGTTATTTACCTTGGGTTATC
CTTGGATTCAACTATATCATCGGAGGCTCGGTCATCAACGAGCTTATCGGAAATCTCGTT
GGACACCTTTATTTCTTCCTCATGTTCAGATACCCAATGGACTTGGGAGGAAGAAACTTT
CTGTCCACGCCTCAGTTTTTGTACCGCTGGCTGCCCAGCAGGAGAGGAGGGGTGTCAGGG
TTTGGCGTGCCCCCTGCTAGCATGCGGCGAGCCGCCGATCAGAACGGCGGCGGCGGGAGA
CACAACTGGGGACAGGGCTTTCGCCTCGGGGACCAGTGAAGGAGTGGCCTCTGGCCCGCC
CACCAGCCTCTCCGCTCCGATGAAGTCTCCCAGTGCTGGGTGACCTTACCCACCGAGTTC
TAGCCGATGCTGTTGGACCCAACCCACACTGAATGTAGTCTTTCAGTCCAAGACAGCAGT
TTTTTTAAATCCTGAAGAAAAAAAATATAAGTGTTCAAAAAAAAAAAAAAAAAAAAAAAA
AGTCCTTACTGCTGAGAAGAACAAATATCAGCTGTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               DERL1_BOVIN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               DERL1_BOVIN

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-396, gnl|bosTau2|chr14 (8038269-8038668)
               

               
               2-396, gnl|Hg17|chr8 (124123788-124123391)
               

               
               2-396, gnl|Mm7|chr15 (57957864-57957479)
               


               
               861-1236, gnl|bosTau2|chr14 (8060813-8061188)
               

               
               861-1236, gnl|Hg17|chr8 (124097006-124096642)
               

               
               861-1236, gnl|Mm7|chr15 (57937246-57936876)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-396, gnl|bosTau2|chr14 (8038269-8038668)
               

               
               2-396, gnl|Hg17|chr8 (124123788-124123391)
               

               
               2-396, gnl|Mm7|chr15 (57957864-57957479)
               


               
               861-1236, gnl|bosTau2|chr14 (8060813-8061188)
               

               
               861-1236, gnl|Hg17|chr8 (124097006-124096642)
               

               
               861-1236, gnl|Mm7|chr15 (57937246-57936876)

Expressed library(ies): 8 entry(ies)

More info

Expressed library(ies): 8 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               clu (0.358938)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               clu (0.358938)
               

               
               jej (0.197844)
               

               
               duo (0.172801)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	2-396, gnl\|bosTau2\|chr14 (8038269-8038668)
	2-396, gnl\|Hg17\|chr8 (124123788-124123391)
	2-396, gnl\|Mm7\|chr15 (57957864-57957479)

	861-1236, gnl\|bosTau2\|chr14 (8060813-8061188)
	861-1236, gnl\|Hg17\|chr8 (124097006-124096642)
	861-1236, gnl\|Mm7\|chr15 (57937246-57936876)

	amn (0.417711)
	clu (0.358938)
	jej (0.197844)
	duo (0.172801)
	nco (0.161734)
	csp (0.161186)
	med (0.116252)
	jca (0.11396)