Non-Coding RNA Search

Ss1.1-Utr1-UTR010048C03.5

Sequence:


               
               AACTCGTCTTTCGCTTCTGTTTCTCCTTTTTCTCTACTCCTCTCGCCCCACCATACTCAC
TGAGTTATTTATTAATGTAATTTGTTTTCTTTTCCTTTTCCTTTTATTTTATTTTTTTTT
TAACCTATATGAGTCACTTACCACACCCACACTTTCCTGCTCACAGTCCCCTTCCACTTT
AGGCCTAATTTTTCTCTTGGATCCGGCTTTCTCCAGCAGCCCCGGGGGTAGGAAGCTCCT
CTTAGTGCTAAGAAACCATGAGCTTCTTGATTGAAGTCCTCGTCTTTGACATGATCTGAC
TCTTCAGTTTGGATGCTGACAGCTCCCTCTGGCCCTACCTTAGCTCTGCGGCATTATGTC
TCCTCTCCGGGCCCCTTCAGCCTGGTCCTCCATACCTCTTGTGCCCTCTCACTTTAGGCA
GCTTGCACTAATCCTGAACGAATGAAGAAATCCCTCCTTTGGAAGTAGAAGAGGCTGAAG
AAAATCCCCCCCAGGCCCCAGGGGACTGAGGGTCCTCCCGATGTCCCCCTAGGAATATGA
ATTCCCCAAAGCCCACATTCAGGATCTGCCTCTAGGATGTGATCTCTCTCTCTCTCTGTC
TCTCTTTCCTCAAATGACCCCACAGCACTGCTGTACTCTCTTCAACCTGCCAGTCTACTC
AGTGGTGGTGTTTCTCTCCTTGGAGTGCCCCAGTTTTATATTCTCAGGGGCCAAGGCTAG
GTCAGCAATCCTCTGTCTCTGACACGTTTGGAGCCACAGGTGCCTAACTGGGAACCAGGG
AAGGGGATGGGTCAAAATTCTTCTCTTTCTCTCCCACCTCTCAGACTTCTTCACTCTAGT
GACCTTCCTGGCTCTCGGGGGCTCCTCTGGTCCCAGTCCTATGAGAAACTGGTGGGCACC
CTCAGCCCCCCAGCCATGCTGCCTTCTTCTCGCCCTTAGCAGGATTCGCCCTCTCATTCC
CGGGCTTCTGGGCCCTGTTCTTCGGATCAGTGGCAGGGAGAAAAGGATGTCTCTTTTCTC
CCTTCTAATTTTCAGTATAACCAAAAATTACCCCAGGATGAGCACGGGCAACTGCCCCCT
CCCCATTCCACTCTTGTCCCAGCAAGAATGGGATGGACGCAACCGAACTGGGGGTCGTCC
TTTACTGCCCCCTCTCCCCTCAGCTCCCAGACGTCGGGCAGGAGGGGGGCACTCTCCTGA
CTACTGCAGAGACCCCTGGCTTTTTGGGTAGCCAAGTTAGCGAGAAGGGGGCAGGAGGAG
ATCCAGCTCCCCCGCAAGTGGAGGTCTCTTTCTACACGTGTTCCCTGGCCAAGGACACAG
CCATCCCATTCTCTGCTTCCTTGAGATTCAAACCAAAGCCTGTTTTTCTATATTTAAAGA
AAAAAAAAAAAGTAAAAACCAAACACAACACCTCACAAGTTGTAACACTGGGGCCTTTTT
CTCTCTCTCTCTCTCCCCTTTTCTCTTCCTTCCATCTTTCTTTCCACACGTCCTTTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCGTCTTTCGCTTCTGTTTCTCCTTTTTCTCTACTCCTCTCGCCCCACCATACTCAC
TGAGTTATTTATTAATGTAATTTGTTTTCTTTTCCTTTTCCTTTTATTTTATTTTTTTTT
TAACCTATATGAGTCACTTACCACACCCACACTTTCCTGCTCACAGTCCCCTTCCACTTT
AGGCCTAATTTTTCTCTTGGATCCGGCTTTCTCCAGCAGCCCCGGGGGTAGGAAGCTCCT
CTTAGTGCTAAGAAACCATGAGCTTCTTGATTGAAGTCCTCGTCTTTGACATGATCTGAC
TCTTCAGTTTGGATGCTGACAGCTCCCTCTGGCCCTACCTTAGCTCTGCGGCATTATGTC
TCCTCTCCGGGCCCCTTCAGCCTGGTCCTCCATACCTCTTGTGCCCTCTCACTTTAGGCA
GCTTGCACTAATCCTGAACGAATGAAGAAATCCCTCCTTTGGAAGTAGAAGAGGCTGAAG
AAAATCCCCCCCAGGCCCCAGGGGACTGAGGGTCCTCCCGATGTCCCCCTAGGAATATGA
ATTCCCCAAAGCCCACATTCAGGATCTGCCTCTAGGATGTGATCTCTCTCTCTCTCTGTC
TCTCTTTCCTCAAATGACCCCACAGCACTGCTGTACTCTCTTCAACCTGCCAGTCTACTC
AGTGGTGGTGTTTCTCTCCTTGGAGTGCCCCAGTTTTATATTCTCAGGGGCCAAGGCTAG
GTCAGCAATCCTCTGTCTCTGACACGTTTGGAGCCACAGGTGCCTAACTGGGAACCAGGG
AAGGGGATGGGTCAAAATTCTTCTCTTTCTCTCCCACCTCTCAGACTTCTTCACTCTAGT
GACCTTCCTGGCTCTCGGGGGCTCCTCTGGTCCCAGTCCTATGAGAAACTGGTGGGCACC
CTCAGCCCCCCAGCCATGCTGCCTTCTTCTCGCCCTTAGCAGGATTCGCCCTCTCATTCC
CGGGCTTCTGGGCCCTGTTCTTCGGATCAGTGGCAGGGAGAAAAGGATGTCTCTTTTCTC
CCTTCTAATTTTCAGTATAACCAAAAATTACCCCAGGATGAGCACGGGCAACTGCCCCCT
CCCCATTCCACTCTTGTCCCAGCAAGAATGGGATGGACGCAACCGAACTGGGGGTCGTCC
TTTACTGCCCCCTCTCCCCTCAGCTCCCAGACGTCGGGCAGGAGGGGGGCACTCTCCTGA
CTACTGCAGAGACCCCTGGCTTTTTGGGTAGCCAAGTTAGCGAGAAGGGGGCAGGAGGAG
ATCCAGCTCCCCCGCAAGTGGAGGTCTCTTTCTACACGTGTTCCCTGGCCAAGGACACAG
CCATCCCATTCTCTGCTTCCTTGAGATTCAAACCAAAGCCTGTTTTTCTATATTTAAAGA
AAAAAAAAAAAGTAAAAACCAAACACAACACCTCACAAGTTGTAACACTGGGGCCTTTTT
CTCTCTCTCTCTCTCCCCTTTTCTCTTCCTTCCATCTTTCTTTCCACACGTCCTTTCCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               506-610, - strand, RNAz p=0.990754
               

               
               651-896, - strand, RNAz p=0.998649

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               506-610, - strand, RNAz p=0.990754
               

               
               651-896, - strand, RNAz p=0.998649

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-896, gnl|bosTau2|chr5 (33587459-33586594)
               

               
               1-896, gnl|Hg17|chr12 (54715572-54716453)
               

               
               1-896, gnl|Mm7|chr10 (128135619-128134733)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-896, gnl|bosTau2|chr5 (33587459-33586594)
               

               
               1-896, gnl|Hg17|chr12 (54715572-54716453)
               

               
               1-896, gnl|Mm7|chr10 (128135619-128134733)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               lnt (0.142308)

	506-610, - strand, RNAz p=0.990754
	651-896, - strand, RNAz p=0.998649

	1-896, gnl\|bosTau2\|chr5 (33587459-33586594)
	1-896, gnl\|Hg17\|chr12 (54715572-54716453)
	1-896, gnl\|Mm7\|chr10 (128135619-128134733)