Ss1.1-Utr1-UTR010048C04.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGCCGGGGGCGGACGGGCGCGCGGCGCGGGCGCGGGCGCAGCGACGTCGTGAATCGCG GGCTGCGCGGGCCGTGAGTGTGCGCTTTTCCCGGGTCCGGCCGCGTCGCCCCGCCGGCAT GAGCTACGACCGCGCCATCACCGTCTTTTCGCCCGACGGCCACCTCTTCCAAGTGGAGTA CGCGCAGGAGGCCGTGAAGAAGGGCTCGACTGCGGTTGGCGTCCGCGGAAGGGACATCGT CGTCCTCGGCGTGGAGAAGAAGTCGGTGGCCAGGCTGCAGGACGAGCGGACCGTGCGGAA GATCTGCGCCCTGGACGACAACGTCTGCATGGCGTTCGCGGGCCTCACCGCGGACGCACG GATAGTCATCAACAGGGCGCGGGTGGAGTGCCAGAGCCACCGGCTGACCGTGGAGGACCC GGTCACTGTGGAGTACATCACCCGCTACATCGCCAGCCTGAAGCAGCGCTACACACAGAG CAACGGTCGCAGGCCCTTTGGGATCTCCGCCCTCATCGTGGGTTTTGACTTTGACGGCAC CCCCAGACTCTACCAGACGGACCCCTCAGGGACCTACCACGCCTGGAAGGCCAATGCTAT AGGCCGGGGCGCCAAATCTGTGCGTGAGTTTCTGGAGAAGAATTACACCGACGAAGCCAT TGAAACGGACGGTCTGACTATTAAGCTGGTTATCAAGGCCCTGCTGGAAGTGGTGCAGTC AGGCGGCAAAAACATTGAACTTGCTGTCATGCGGCGAGATCAGCCCCTCAAGATTTTAAA TCCTGAGGAAATTGAGAAGTACGTTGCTGAGATTGAAAAAGAGAAAGAAGAGAACGAAAA GAAGAAGCAGAAGAAGGCGTCGTGATGAATGGAAGCTCGCTCGCAGTGATTTTTAAATTT ACATCATGGGCGATTCTCAGAATGACACGCAGGCGTCTCCCCTCCCGTCTTACTGTCCAC GCGTGCCCTACAATAAACCTGCACGTTTTTAACCTTAAAAAAAAAAAACAGTCCTTGAGG TGCTGACAGTCCTTTAGAAAGCGCACTCCCTTGGGGTCTGGCACTTTCCTTCTGGCCCGT ATTGCCAGGCTCTAGACGGCGGAGGGTGAGCGTGGCTCCTCCTTGGGGGCTGAGAGGGCC TCACGGGGTCCACCTGCTGCGGGCGGAGGCGCCGCGGATGCCGAAACTTGGGGTCCCTCC TTGAGGACCAGGGCAGCATGCTTCTTCGTGGGCCTTTGCTCACGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGCCGGGGGCGGACGGGCGCGCGGCGCGGGCGCGGGCGCAGCGACGTCGTGAATCGCG GGCTGCGCGGGCCGTGAGTGTGCGCTTTTCCCGGGTCCGGCCGCGTCGCCCCGCCGGCAT GAGCTACGACCGCGCCATCACCGTCTTTTCGCCCGACGGCCACCTCTTCCAAGTGGAGTA CGCGCAGGAGGCCGTGAAGAAGGGCTCGACTGCGGTTGGCGTCCGCGGAAGGGACATCGT CGTCCTCGGCGTGGAGAAGAAGTCGGTGGCCAGGCTGCAGGACGAGCGGACCGTGCGGAA GATCTGCGCCCTGGACGACAACGTCTGCATGGCGTTCGCGGGCCTCACCGCGGACGCACG GATAGTCATCAACAGGGCGCGGGTGGAGTGCCAGAGCCACCGGCTGACCGTGGAGGACCC GGTCACTGTGGAGTACATCACCCGCTACATCGCCAGCCTGAAGCAGCGCTACACACAGAG CAACGGTCGCAGGCCCTTTGGGATCTCCGCCCTCATCGTGGGTTTTGACTTTGACGGCAC CCCCAGACTCTACCAGACGGACCCCTCAGGGACCTACCACGCCTGGAAGGCCAATGCTAT AGGCCGGGGCGCCAAATCTGTGCGTGAGTTTCTGGAGAAGAATTACACCGACGAAGCCAT TGAAACGGACGGTCTGACTATTAAGCTGGTTATCAAGGCCCTGCTGGAAGTGGTGCAGTC AGGCGGCAAAAACATTGAACTTGCTGTCATGCGGCGAGATCAGCCCCTCAAGATTTTAAA TCCTGAGGAAATTGAGAAGTACGTTGCTGAGATTGAAAAAGAGAAAGAAGAGAACGAAAA GAAGAAGCAGAAGAAGGCGTCGTGATGAATGGAAGCTCGCTCGCAGTGATTTTTAAATTT ACATCATGGGCGATTCTCAGAATGACACGCAGGCGTCTCCCCTCCCGTCTTACTGTCCAC GCGTGCCCTACAATAAACCTGCACGTTTTTAACCTTAAAAAAAAAAAACAGTCCTTGAGG TGCTGACAGTCCTTTAGAAAGCGCACTCCCTTGGGGTCTGGCACTTTCCTTCTGGCCCGT ATTGCCAGGCTCTAGACGGCGGAGGGTGAGCGTGGCTCCTCCTTGGGGGCTGAGAGGGCC TCACGGGGTCCACCTGCTGCGGGCGGAGGCGCCGCGGATGCCGAAACTTGGGGTCCCTCC TTGAGGACCAGGGCAGCATGCTTCTTCGTGGGCCTTTGCTCACGTCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | More info |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
| 1-221, gnl|bosTau2|chr13 (36181772-36181987) | |
| 1-221, gnl|Hg17|chr20 (60151868-60151654) | |
| 338-466, gnl|bosTau2|chr13 (36184763-36184891) | |
| 338-466, gnl|Hg17|chr20 (60148360-60148232) | |
| 338-466, gnl|Mm7|chr2 (180539765-180539638) | |
| 588-711, gnl|bosTau2|chr13 (36186050-36186173) | |
| 588-711, gnl|canFam2|chr24 (49230531-49230660) | |
| 588-711, gnl|danRer3|chr9 (40508248-40508121) | |
| 588-711, gnl|dasNov1|scaffold_74471 (5301-5409) | |
| 588-711, gnl|echTel1|scaffold_229238 (6033-5904) | |
| 588-711, gnl|fr1|chrUn (285600703-285600576) | |
| 588-711, gnl|galGal2|chr20 (7465783-7465912) | |
| 588-711, gnl|hg17|chr20 (60146617-60146746) | |
| 588-711, gnl|Hg17|chr20 (60146743-60146620) | |
| 588-711, gnl|loxAfr1|scaffold_17216 (38677-38806) | |
| 588-711, gnl|mm7|chr2 (180538291-180538420) | |
| 588-711, gnl|Mm7|chr2 (180538417-180538294) | |
| 588-711, gnl|monDom2|scaffold_1 (179425939-179426068) | |
| 588-711, gnl|oryCun1|scaffold_77084 (756-885) | |
| 588-711, gnl|panTro1|chr21 (63155792-63155921) | |
| 588-711, gnl|rheMac2|chr10 (2407220-2407091) | |
| 588-711, gnl|rn3|chr3 (169007886-169008015) | |
| 588-711, gnl|tetNig1|chr15 (6695708-6695581) | |
| 588-711, gnl|xenTro1|scaffold_220 (390024-390152) | |
| 771-1200, gnl|bosTau2|chr13 (36187141-36187582) | |
| 771-1200, gnl|Hg17|chr20 (60145402-60144966) |
| Aligned organism(s): 26 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-221, gnl|bosTau2|chr13 (36181772-36181987) | |
| 1-221, gnl|Hg17|chr20 (60151868-60151654) | |
| 338-466, gnl|bosTau2|chr13 (36184763-36184891) | |
| 338-466, gnl|Hg17|chr20 (60148360-60148232) | |
| 338-466, gnl|Mm7|chr2 (180539765-180539638) | |
| 588-711, gnl|bosTau2|chr13 (36186050-36186173) | |
| 588-711, gnl|canFam2|chr24 (49230531-49230660) | |
| 588-711, gnl|danRer3|chr9 (40508248-40508121) | |
| 588-711, gnl|dasNov1|scaffold_74471 (5301-5409) | |
| 588-711, gnl|echTel1|scaffold_229238 (6033-5904) | |
| 588-711, gnl|fr1|chrUn (285600703-285600576) | |
| 588-711, gnl|galGal2|chr20 (7465783-7465912) | |
| 588-711, gnl|hg17|chr20 (60146617-60146746) | |
| 588-711, gnl|Hg17|chr20 (60146743-60146620) | |
| 588-711, gnl|loxAfr1|scaffold_17216 (38677-38806) | |
| 588-711, gnl|mm7|chr2 (180538291-180538420) | |
| 588-711, gnl|Mm7|chr2 (180538417-180538294) | |
| 588-711, gnl|monDom2|scaffold_1 (179425939-179426068) | |
| 588-711, gnl|oryCun1|scaffold_77084 (756-885) | |
| 588-711, gnl|panTro1|chr21 (63155792-63155921) | |
| 588-711, gnl|rheMac2|chr10 (2407220-2407091) | |
| 588-711, gnl|rn3|chr3 (169007886-169008015) | |
| 588-711, gnl|tetNig1|chr15 (6695708-6695581) | |
| 588-711, gnl|xenTro1|scaffold_220 (390024-390152) | |
| 771-1200, gnl|bosTau2|chr13 (36187141-36187582) | |
| 771-1200, gnl|Hg17|chr20 (60145402-60144966) |
| Expressed library(ies): 74 entry(ies) | More info |
| Expressed library(ies): 74 entry(ies) | Help | Less info |
| sto (1.79824) | |
| cje (1.65235) | |
| che (1.49945) | |
| cki (1.48711) | |
| nco (1.13214) | |
| cly (1.08578) | |
| cov (0.792917) | |
| cag (0.755972) | |
| cmu (0.745573) | |
| duo (0.691204) | |
| cut (0.679694) | |
| pty (0.570858) | |
| cst (0.560146) | |
| ssp (0.542079) | |
| ese (0.506009) | |
| pgl (0.473934) | |
| fat (0.442282) | |
| hea (0.408998) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| thg (0.380373) | |
| eep (0.367692) | |
| ebs (0.354904) | |
| ton (0.351) | |
| rec (0.346141) | |
| vin (0.332557) | |
| nje (0.33184) | |
| csp (0.322373) | |
| mga (0.32041) | |
| cli (0.305623) | |
| sme (0.305437) | |
| isp (0.300752) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| sug (0.254582) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 74 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| sto (1.79824) | |
| cje (1.65235) | |
| che (1.49945) | |
| cki (1.48711) | |
| nco (1.13214) | |
| cly (1.08578) | |
| cov (0.792917) | |
| cag (0.755972) | |
| cmu (0.745573) | |
| duo (0.691204) | |
| cut (0.679694) | |
| pty (0.570858) | |
| cst (0.560146) | |
| ssp (0.542079) | |
| ese (0.506009) | |
| pgl (0.473934) | |
| fat (0.442282) | |
| hea (0.408998) | |
| fli (0.405762) | |
| nmm (0.398406) | |
| thg (0.380373) | |
| eep (0.367692) | |
| ebs (0.354904) | |
| ton (0.351) | |
| rec (0.346141) | |
| vin (0.332557) | |
| nje (0.33184) | |
| csp (0.322373) | |
| mga (0.32041) | |
| cli (0.305623) | |
| sme (0.305437) | |
| isp (0.300752) | |
| ldo (0.291008) | |
| spl (0.286369) | |
| hyp (0.285673) | |
| lnt (0.284616) | |
| csk (0.281492) | |
| cga (0.279096) | |
| hlv (0.278513) | |
| ste (0.270416) | |
| sug (0.254582) | |
| ecc (0.23007) | |
| spc (0.226732) | |
| nms (0.213858) | |
| jej (0.197844) | |
| fcc (0.197785) | |
| eje (0.197668) | |
| aor (0.195274) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| sag (0.182715) | |
| mgm (0.180343) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| eye (0.170503) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| eli (0.151814) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| liv (0.146284) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ute (0.132784) | |
| kid (0.129735) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) | |
| nbm (0.0993246) |