Non-Coding RNA Search

Ss1.1-Utr1-UTR010048E01.5

Sequence:


               
               AAGCCGCGCGCTCTTTTTCCGACAGCTGCCGGGGAGCCCAGCGCGCCGTTCTGCCTCCTG
CCAGGTCTGTCCGCTCGGGTCGCCGCCCGCCGTCACCGCGCCATGACCACCCAGCAAATT
GTTCTCCAGGGCCCGGGGCCGTGGGGCTTCCGTCTCGTGGGGGGCAAGGACTTCGAGCAG
CCTCTCGCCATCTCTCGGGTCACTCCCGGGAGCAAGGCTGCGATAGCTAACTTATGTATT
GGAGATGTAATCACAGCCATTGACGGGGAAAATACTAGCAACATGACCCACTTGGAAGCT
CAGAACAAAATCAAGGGCTGCACAGACAACATGACTCTCACGGTAGCCAGATCTGAACAG
AAAATCTGGTCTCCTCTGGTGACAGAGGAAGGGAAACGTCACCCATACAAGATGAATTTA
GCCTCTGAACCCCAAGAGGTCTTACATATAGGAAGCGCCCACAACCGGAGTGCCATGCCC
TTTACCGCCTCACCTGCCTCCAGCGCTTCCCCCAGGATCATCACAAACCAGTACAACAAC
CCAGCTGGCCTCTACTCTTCTGAAAACATCTCCAGCTTCAACAGTGCCTTGGAGTCAAAG
ACGGCAGCCAGTGGGCAAGAGACGAATGGCAGAGCCTTAGACCATTCTCAGCTTCCAAGC
GGGCTCGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTA
AATGAGCCTCCGAAACAGTCCACTTCGTTCCTGGTTTTGCAGGAAATCCTGGAGTCTGAG
GAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTTAAGGCTCCAGTCACCAAA
GTGGCTGCATCGATTGGCAATGCCCAGAAGTTGCCCATGTGTGACAAATGTGGCACTGGC
ATTGTTGGCGTGTTTGTGAAACTGCGGGACCGTCACCGCCACCCTGAGTGTTACGTGTGC
ACCGACTGTGGCACCAACCTGAAACAGAAGGGCCATTTCTTTGTGGAGGATCAGATCTAC
TGTGAAAAGCACGCCCGGGAGCGGGTCATTCCACCCGAGGGCTACGACGTGGTCACTGTG
TTTCCCAAGTGAGCCGGCAGCTTGGCACCAAACGTTTCTCCTACGAGTCCCTGGTGGCGT
CTTGTTCTCTGAAAGCTGGGGCCTCTATCTTCTTGAAAGTGCTCGTTTACTTTGGTTTGA
TTTCTGCTCATTAAACGTCACATCCCCTCTGCTAACTGACTCACACTGGCTGTGTGATGC
CCGCCTTTATAATTAACAGAAGATGGTTCTGTTCAGTGTCCCCTTGCCAGCGGCACTGTG
TCTCCTCTTCACCTCCATTCATCTCTGCTGCAAATGGACATCTGCCAAAGTTGAACCAGC
TGAATTTAGTATGTCTGACAATGATTTCATATTTACTCAATAAATTAATAGACTCCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCCGCGCGCTCTTTTTCCGACAGCTGCCGGGGAGCCCAGCGCGCCGTTCTGCCTCCTG
CCAGGTCTGTCCGCTCGGGTCGCCGCCCGCCGTCACCGCGCCATGACCACCCAGCAAATT
GTTCTCCAGGGCCCGGGGCCGTGGGGCTTCCGTCTCGTGGGGGGCAAGGACTTCGAGCAG
CCTCTCGCCATCTCTCGGGTCACTCCCGGGAGCAAGGCTGCGATAGCTAACTTATGTATT
GGAGATGTAATCACAGCCATTGACGGGGAAAATACTAGCAACATGACCCACTTGGAAGCT
CAGAACAAAATCAAGGGCTGCACAGACAACATGACTCTCACGGTAGCCAGATCTGAACAG
AAAATCTGGTCTCCTCTGGTGACAGAGGAAGGGAAACGTCACCCATACAAGATGAATTTA
GCCTCTGAACCCCAAGAGGTCTTACATATAGGAAGCGCCCACAACCGGAGTGCCATGCCC
TTTACCGCCTCACCTGCCTCCAGCGCTTCCCCCAGGATCATCACAAACCAGTACAACAAC
CCAGCTGGCCTCTACTCTTCTGAAAACATCTCCAGCTTCAACAGTGCCTTGGAGTCAAAG
ACGGCAGCCAGTGGGCAAGAGACGAATGGCAGAGCCTTAGACCATTCTCAGCTTCCAAGC
GGGCTCGTCATCGACAAAGAATCTGAAGTTTACAAGATGCTTCAGGAGAAACAGGAGTTA
AATGAGCCTCCGAAACAGTCCACTTCGTTCCTGGTTTTGCAGGAAATCCTGGAGTCTGAG
GAAAAAGGGGATCCCAACAAGCCCTCAGGATTCAGAAGTGTTAAGGCTCCAGTCACCAAA
GTGGCTGCATCGATTGGCAATGCCCAGAAGTTGCCCATGTGTGACAAATGTGGCACTGGC
ATTGTTGGCGTGTTTGTGAAACTGCGGGACCGTCACCGCCACCCTGAGTGTTACGTGTGC
ACCGACTGTGGCACCAACCTGAAACAGAAGGGCCATTTCTTTGTGGAGGATCAGATCTAC
TGTGAAAAGCACGCCCGGGAGCGGGTCATTCCACCCGAGGGCTACGACGTGGTCACTGTG
TTTCCCAAGTGAGCCGGCAGCTTGGCACCAAACGTTTCTCCTACGAGTCCCTGGTGGCGT
CTTGTTCTCTGAAAGCTGGGGCCTCTATCTTCTTGAAAGTGCTCGTTTACTTTGGTTTGA
TTTCTGCTCATTAAACGTCACATCCCCTCTGCTAACTGACTCACACTGGCTGTGTGATGC
CCGCCTTTATAATTAACAGAAGATGGTTCTGTTCAGTGTCCCCTTGCCAGCGGCACTGTG
TCTCCTCTTCACCTCCATTCATCTCTGCTGCAAATGGACATCTGCCAAAGTTGAACCAGC
TGAATTTAGTATGTCTGACAATGATTTCATATTTACTCAATAAATTAATAGACTCCAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5E9E1_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5E9E1_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               708-867, - strand, RNAz p=0.711062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               708-867, - strand, RNAz p=0.711062

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               189-1441, gnl|bosTau2|chr18 (15850805-15852036)
               

               
               189-1441, gnl|Hg17|chr14 (49586920-49588156)
               

               
               189-1441, gnl|Mm7|chr5 (31452600-31453837)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-1441, gnl|bosTau2|chr18 (15850805-15852036)
               

               
               189-1441, gnl|Hg17|chr14 (49586920-49588156)
               

               
               189-1441, gnl|Mm7|chr5 (31452600-31453837)

Expressed library(ies): 33 entry(ies)

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Expressed library(ies): 33 entry(ies)

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               vin (0.665115)
               

               
               nco (0.485201)
               

               
               hea (0.408998)
               

               
               cov (0.396458)
               

               
               sme (0.305437)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 33 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.665115)
               

               
               nco (0.485201)
               

               
               hea (0.408998)
               

               
               cov (0.396458)
               

               
               sme (0.305437)
               

               
               cga (0.279096)
               

               
               hlv (0.278513)
               

               
               che (0.272628)
               

               
               ste (0.270416)
               

               
               eep (0.245128)
               

               
               jej (0.197844)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               rec (0.17307)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               tbr (0.154178)
               

               
               cag (0.151194)
               

               
               bfe (0.149858)
               

               
               fat (0.147427)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               tra (0.123092)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	189-1441, gnl\|bosTau2\|chr18 (15850805-15852036)
	189-1441, gnl\|Hg17\|chr14 (49586920-49588156)
	189-1441, gnl\|Mm7\|chr5 (31452600-31453837)

	vin (0.665115)
	nco (0.485201)
	hea (0.408998)
	cov (0.396458)
	sme (0.305437)
	cga (0.279096)
	hlv (0.278513)
	che (0.272628)
	ste (0.270416)
	eep (0.245128)
	jej (0.197844)
	aor (0.195274)
	ill (0.175593)
	rec (0.17307)
	duo (0.172801)
	mcp (0.170648)
	tbr (0.154178)
	cag (0.151194)
	bfe (0.149858)
	fat (0.147427)
	lnt (0.142308)
	csk (0.140746)
	ssp (0.13552)
	pla (0.133672)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	tra (0.123092)
	clu (0.119646)
	pgl (0.118483)
	jca (0.11396)
	cty (0.10408)
	ldo (0.0970026)