Ss1.1-Utr1-UTR010048F10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGATAAAGGACCCTGTGCAGGTAATTGTGTGTCTTTGGAATCCTGTAATTGTAGAATGCG AAGTTTAGTGATTCTCTAAACTGGGCTAAGGCTGGTAAGAGTATGGAGCAGTGGCCCCTG AGGACTCCAAGGGCTGAAGCCAAGGAGCCACCCCCCCCTTCCCTGGTCTGCCCAGCCCAG GGGACCTGCCCCATTCCTGTGGCCCAGGGGCCCAGCTTCCAGTCAGCAGTGTCAAAAGTG ACCTGTGGCTCTGCCGTGGCTGTGAGACGAGTACATTCCAAAGGAGCAGCCACGGGGAGG GGGTAGGCGCAGCCATCCCTTGGAGGCTCAGAGCAGCTGGCCCAGGCTCCAGCTCGCCTT CAACAGAAGCTCAAGCGTCCTCAGAAACGACCCTGGCCAATGTCACCGCAGAGCTATGGC GGTGTTGTCAGGGCTAATGTGAAATCTCTTCCCGTGGCGCCGATCCTCCGGCTCTGCAGC GCCAGCTCGGACAGATTGAGGTCTCTGTGGCTTTGGTGACCCTGCTTAAGCATTCCCACC GTGTCCCAGCTCTGCTCTCAGCCTGCCTCCCGCTGCACCCCCCTCACCTGACCTTAGGCC TAGGGAGGGGGGGGCAGTGCCCCAAGGCCAGGGGCTTCTGCTCGGAGAGCTGTCAGGCTT CCTGAGGACATCAGGCTTTGAGGTCCAACCAACTTGGGGTCCAGCTGACCTGGGACCAGC AGTGTCAAAAGTGACCTGTGGCTCTGCCGTGGCTGTGAGATGAGTACATTCCAAAGGAGC AGCCACGGGGAGGGGGTAGGCTCAGAGATGTGCCTCATCCTGTGCTTCAGGAAGGGCTAG GGAACAATTTTGTTATTGTATTAACTTTACTCAGTTAACTCACTTGAGAAATTAACCAAT TTTTACTTTCTGTCTAGAATGATGTATGTGTAGGGAAGTAAGCCGTAATGTTCCCAAAGT GCCTTGTTTTCTCTGATATAAATATATTTATAAGGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGATAAAGGACCCTGTGCAGGTAATTGTGTGTCTTTGGAATCCTGTAATTGTAGAATGCG AAGTTTAGTGATTCTCTAAACTGGGCTAAGGCTGGTAAGAGTATGGAGCAGTGGCCCCTG AGGACTCCAAGGGCTGAAGCCAAGGAGCCACCCCCCCCTTCCCTGGTCTGCCCAGCCCAG GGGACCTGCCCCATTCCTGTGGCCCAGGGGCCCAGCTTCCAGTCAGCAGTGTCAAAAGTG ACCTGTGGCTCTGCCGTGGCTGTGAGACGAGTACATTCCAAAGGAGCAGCCACGGGGAGG GGGTAGGCGCAGCCATCCCTTGGAGGCTCAGAGCAGCTGGCCCAGGCTCCAGCTCGCCTT CAACAGAAGCTCAAGCGTCCTCAGAAACGACCCTGGCCAATGTCACCGCAGAGCTATGGC GGTGTTGTCAGGGCTAATGTGAAATCTCTTCCCGTGGCGCCGATCCTCCGGCTCTGCAGC GCCAGCTCGGACAGATTGAGGTCTCTGTGGCTTTGGTGACCCTGCTTAAGCATTCCCACC GTGTCCCAGCTCTGCTCTCAGCCTGCCTCCCGCTGCACCCCCCTCACCTGACCTTAGGCC TAGGGAGGGGGGGGCAGTGCCCCAAGGCCAGGGGCTTCTGCTCGGAGAGCTGTCAGGCTT CCTGAGGACATCAGGCTTTGAGGTCCAACCAACTTGGGGTCCAGCTGACCTGGGACCAGC AGTGTCAAAAGTGACCTGTGGCTCTGCCGTGGCTGTGAGATGAGTACATTCCAAAGGAGC AGCCACGGGGAGGGGGTAGGCTCAGAGATGTGCCTCATCCTGTGCTTCAGGAAGGGCTAG GGAACAATTTTGTTATTGTATTAACTTTACTCAGTTAACTCACTTGAGAAATTAACCAAT TTTTACTTTCTGTCTAGAATGATGTATGTGTAGGGAAGTAAGCCGTAATGTTCCCAAAGT GCCTTGTTTTCTCTGATATAAATATATTTATAAGGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGG |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 80-197, - strand, RNAz p=0.876379 | |
| 557-668, - strand, RNAz p=0.96888 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-197, - strand, RNAz p=0.876379 | |
| 557-668, - strand, RNAz p=0.96888 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-731, gnl|bosTau2|chr2 (77996210-77996930) | |
| 1-731, gnl|Hg17|chr1 (27416216-27415496) | |
| 1-731, gnl|Mm7|chr4 (132576818-132577521) | |
| 795-996, gnl|bosTau2|chr2 (77996918-77997119) | |
| 795-996, gnl|canFam2|chr2 (75763140-75762724) | |
| 795-996, gnl|canFam2|chr2 (75762724-75763140) | |
| 795-996, gnl|dasNov1|scaffold_9435 (7228-7672) | |
| 795-996, gnl|dasNov1|scaffold_9435 (7672-7228) | |
| 795-996, gnl|echTel1|scaffold_319044 (3688-3380) | |
| 795-996, gnl|echTel1|scaffold_319044 (3380-3688) | |
| 795-996, gnl|galGal2|chrUn (145491053-145490594) | |
| 795-996, gnl|galGal2|chrUn (145490594-145491053) | |
| 795-996, gnl|hg17|chr1 (27415268-27415725) | |
| 795-996, gnl|Hg17|chr1 (27415509-27415268) | |
| 795-996, gnl|hg17|chrX (47423531-47423976) | |
| 795-996, gnl|loxAfr1|scaffold_1480 (113465-113878) | |
| 795-996, gnl|loxAfr1|scaffold_1480 (113878-113465) | |
| 795-996, gnl|mm7|chr4 (132577745-132577297) | |
| 795-996, gnl|mm7|chr4 (132577297-132577745) | |
| 795-996, gnl|Mm7|chr4 (132577508-132577743) | |
| 795-996, gnl|oryCun1|scaffold_204050 (37117-37571) | |
| 795-996, gnl|oryCun1|scaffold_204050 (37571-37117) | |
| 795-996, gnl|panTro1|chr1 (28093601-28094046) | |
| 795-996, gnl|panTro1|chr1 (28094046-28093601) | |
| 795-996, gnl|rheMac2|chr1 (30077423-30077868) | |
| 795-996, gnl|rheMac2|chr1 (30077868-30077423) | |
| 795-996, gnl|rn3|chr5 (151937680-151938122) | |
| 795-996, gnl|rn3|chr5 (151938122-151937680) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-731, gnl|bosTau2|chr2 (77996210-77996930) | |
| 1-731, gnl|Hg17|chr1 (27416216-27415496) | |
| 1-731, gnl|Mm7|chr4 (132576818-132577521) | |
| 795-996, gnl|bosTau2|chr2 (77996918-77997119) | |
| 795-996, gnl|canFam2|chr2 (75763140-75762724) | |
| 795-996, gnl|canFam2|chr2 (75762724-75763140) | |
| 795-996, gnl|dasNov1|scaffold_9435 (7228-7672) | |
| 795-996, gnl|dasNov1|scaffold_9435 (7672-7228) | |
| 795-996, gnl|echTel1|scaffold_319044 (3688-3380) | |
| 795-996, gnl|echTel1|scaffold_319044 (3380-3688) | |
| 795-996, gnl|galGal2|chrUn (145491053-145490594) | |
| 795-996, gnl|galGal2|chrUn (145490594-145491053) | |
| 795-996, gnl|hg17|chr1 (27415268-27415725) | |
| 795-996, gnl|Hg17|chr1 (27415509-27415268) | |
| 795-996, gnl|hg17|chrX (47423531-47423976) | |
| 795-996, gnl|loxAfr1|scaffold_1480 (113465-113878) | |
| 795-996, gnl|loxAfr1|scaffold_1480 (113878-113465) | |
| 795-996, gnl|mm7|chr4 (132577745-132577297) | |
| 795-996, gnl|mm7|chr4 (132577297-132577745) | |
| 795-996, gnl|Mm7|chr4 (132577508-132577743) | |
| 795-996, gnl|oryCun1|scaffold_204050 (37117-37571) | |
| 795-996, gnl|oryCun1|scaffold_204050 (37571-37117) | |
| 795-996, gnl|panTro1|chr1 (28093601-28094046) | |
| 795-996, gnl|panTro1|chr1 (28094046-28093601) | |
| 795-996, gnl|rheMac2|chr1 (30077423-30077868) | |
| 795-996, gnl|rheMac2|chr1 (30077868-30077423) | |
| 795-996, gnl|rn3|chr5 (151937680-151938122) | |
| 795-996, gnl|rn3|chr5 (151938122-151937680) |
| Expressed library(ies): 16 entry(ies) | More info |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fbs (0.350693) | |
| eep (0.245128) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| che (0.136314) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |
| Expressed library(ies): 16 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fbs (0.350693) | |
| eep (0.245128) | |
| cly (0.241284) | |
| cbe (0.239234) | |
| nep (0.183925) | |
| fty (0.17584) | |
| ill (0.175593) | |
| mcp (0.170648) | |
| cli (0.152812) | |
| che (0.136314) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| cty (0.10408) |