Ss1.1-Utr1-UTR010048G06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCATCTGGCGCTCCTGCCCGGACGTGAGAAGCGACGGCGCAGCGCGGTGCAGCGCAGCT CCGGCTCCCCTTTCCCCCTTGCCGGGCGAGAGGTGTCTATGGGGCACCCGCTGCCGCCGC CGCTACCGCCACCGCCGCCGCCGGGTGCTGTCTCTATGGCGAGGAGGAAGAGGAGGAGCG CGAGCTCAGCGACACAAGTACACAAATAAAGGATAAAGTATTTTATGAAACAAATCTTCA ATCAAGTGTAACATTTTGATGCTTGGCAGCTAGACCCCTTGTGCCCTCACTATGCCAGCA GCAACTGTAGACCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACCTGGATGAAGAG ATGAAGAAAATTCGTCAAGTTATCCGAAAATATAATTACGTTGCCATGGACACCGAGTTT CCAGGTGTGGTTGCAAGACCCATTGGAGAATTCAGGAGTAATGCCGACTATCAGTACCAA CTATTGCGGTGTAATGTAGACTTGTTAAAGATAATTCAGCTAGGACTGACATTTATGAAT GAGCAAGGAGAATACCCTCCAGGAACTTCAACTTGGCAGTTTAATTTTAAATTTAATTTG ACGGAGGACATGTATGCCCAAGACTCTATAGAGCTACTGACAACATCTGGTATCCAGTTT AAAAAACATGAGGAGGAAGGAATTGAAACCCAGTACTTTGCAGAACTTCTTATGACTTCA GGAGTAGTCCTCTGTGAAGGGGTCAAATGGTTATCATTTCATAGTGGTTATGACTTTGGC TACTTAATCAAAATCCTGACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAG ATCCTTCGATTGTTTTTTCCCGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAA AATCTCAAAGGTGGTCTACAGGAAGTCGCTGAACAGTTAGAGCTGGAACGGATAGGACCA CAACATCAGGCAGGATCTGACTCATTGCTCACAGGAATGGCCTTTTTCAAAATGAGAGAA ATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGGTCATTTGTATGGCCTTGGT TCTGGTTCATCCTATGTACAGAATGGCACAGGGAATGCATATGAAGAGGAAGCCAACAAG CAGTCATGACATGAAATAGTTCTTTTTATTTTATTTGAGCAACACACATGCTTGTATATA GGTTTTATCTCTGGTTTAATCCCTTGAACAATAGACATTACTTTTTTTTTTCATAGTTCA TTTTATTTTCTGCCTTTCAGTACTAAGTATGACCATTCCTATCTCAGATCTTAATAAATA GAAAAGCATTCAGGTTAAATCTGGCCTTAATATACTTGTTAGTAGGCGTGTGTGACAGAG TGGGGAAAGCTACATCATATTGAATACTTTGATAAACTTTACCTACTTGAGCTTGGTTTG TTTTTTCCCTTTCTGAAATTAACTAGCACTGACTGTAATTTATTTCCCTGTTTCATGTCT CCCTTCCATTCTGCAGGAGTTTTAGCTATTTGAAATTGTGGACCATCAATTTTGCACTTT AGAGAGTGATTCTGACTCAAATCCTCTGTTTTATCAGCAATTTTGGTTTTCTTGCTCTTA GCTGGAAAAATGACCATCTGCCAACTCTATACAGTATTTGTTTTTGACCCACGGAATATA GCACATGCATTGTGCAAATGGTTGATTCAGCAAGACTACAAAAAAAAAAAAAAAAAAAAA AAAAAAGACAAAAAACTACTGAGGAGCTTAGTAACTGCTGTTTCTGTACGTAGTATTTAA TCTTCCAAGCACATCTAGTGTCTGTCAGTTTCTAATGGGCATGTGTAGGCTGCTCTGTGA CTGAAGAATTTTTCAAACCAGCTTTACACCCTTCAGGAAAAATCGTTGGTGATGGGATAT TTAGTGTCTGCCGGGAAATGGGTATCCAAGATACTGAAGCTGCAGTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCATCTGGCGCTCCTGCCCGGACGTGAGAAGCGACGGCGCAGCGCGGTGCAGCGCAGCT CCGGCTCCCCTTTCCCCCTTGCCGGGCGAGAGGTGTCTATGGGGCACCCGCTGCCGCCGC CGCTACCGCCACCGCCGCCGCCGGGTGCTGTCTCTATGGCGAGGAGGAAGAGGAGGAGCG CGAGCTCAGCGACACAAGTACACAAATAAAGGATAAAGTATTTTATGAAACAAATCTTCA ATCAAGTGTAACATTTTGATGCTTGGCAGCTAGACCCCTTGTGCCCTCACTATGCCAGCA GCAACTGTAGACCATAGCCAAAGAATTTGTGAAGTTTGGGCTTGCAACCTGGATGAAGAG ATGAAGAAAATTCGTCAAGTTATCCGAAAATATAATTACGTTGCCATGGACACCGAGTTT CCAGGTGTGGTTGCAAGACCCATTGGAGAATTCAGGAGTAATGCCGACTATCAGTACCAA CTATTGCGGTGTAATGTAGACTTGTTAAAGATAATTCAGCTAGGACTGACATTTATGAAT GAGCAAGGAGAATACCCTCCAGGAACTTCAACTTGGCAGTTTAATTTTAAATTTAATTTG ACGGAGGACATGTATGCCCAAGACTCTATAGAGCTACTGACAACATCTGGTATCCAGTTT AAAAAACATGAGGAGGAAGGAATTGAAACCCAGTACTTTGCAGAACTTCTTATGACTTCA GGAGTAGTCCTCTGTGAAGGGGTCAAATGGTTATCATTTCATAGTGGTTATGACTTTGGC TACTTAATCAAAATCCTGACCAACTCTAACTTGCCTGAAGAAGAACTTGACTTCTTTGAG ATCCTTCGATTGTTTTTTCCCGTCATTTATGATGTGAAGTACCTCATGAAGAGCTGCAAA AATCTCAAAGGTGGTCTACAGGAAGTCGCTGAACAGTTAGAGCTGGAACGGATAGGACCA CAACATCAGGCAGGATCTGACTCATTGCTCACAGGAATGGCCTTTTTCAAAATGAGAGAA ATGTTCTTTGAAGATCATATTGATGATGCCAAATATTGTGGTCATTTGTATGGCCTTGGT TCTGGTTCATCCTATGTACAGAATGGCACAGGGAATGCATATGAAGAGGAAGCCAACAAG CAGTCATGACATGAAATAGTTCTTTTTATTTTATTTGAGCAACACACATGCTTGTATATA GGTTTTATCTCTGGTTTAATCCCTTGAACAATAGACATTACTTTTTTTTTTCATAGTTCA TTTTATTTTCTGCCTTTCAGTACTAAGTATGACCATTCCTATCTCAGATCTTAATAAATA GAAAAGCATTCAGGTTAAATCTGGCCTTAATATACTTGTTAGTAGGCGTGTGTGACAGAG TGGGGAAAGCTACATCATATTGAATACTTTGATAAACTTTACCTACTTGAGCTTGGTTTG TTTTTTCCCTTTCTGAAATTAACTAGCACTGACTGTAATTTATTTCCCTGTTTCATGTCT CCCTTCCATTCTGCAGGAGTTTTAGCTATTTGAAATTGTGGACCATCAATTTTGCACTTT AGAGAGTGATTCTGACTCAAATCCTCTGTTTTATCAGCAATTTTGGTTTTCTTGCTCTTA GCTGGAAAAATGACCATCTGCCAACTCTATACAGTATTTGTTTTTGACCCACGGAATATA GCACATGCATTGTGCAAATGGTTGATTCAGCAAGACTACAAAAAAAAAAAAAAAAAAAAA AAAAAAGACAAAAAACTACTGAGGAGCTTAGTAACTGCTGTTTCTGTACGTAGTATTTAA TCTTCCAAGCACATCTAGTGTCTGTCAGTTTCTAATGGGCATGTGTAGGCTGCTCTGTGA CTGAAGAATTTTTCAAACCAGCTTTACACCCTTCAGGAAAAATCGTTGGTGATGGGATAT TTAGTGTCTGCCGGGAAATGGGTATCCAAGATACTGAAGCTGCAGTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 292-409, + strand, RNAz p=0.96573 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 292-409, + strand, RNAz p=0.96573 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC070187, + |
| Aligned organism(s): 76 entry(ies) | More info |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
| 195-409, gnl|bosTau2|chr27 (12688084-12688297) | |
| 195-409, gnl|canFam2|chr16 (43527615-43527776) | |
| 195-409, gnl|danRer3|chr14 (30474674-30474828) | |
| 195-409, gnl|dasNov1|scaffold_105654 (3437-3273) | |
| 195-409, gnl|echTel1|scaffold_296227 (566-404) | |
| 195-409, gnl|fr1|chrUn (108489681-108489823) | |
| 195-409, gnl|galGal2|chr4 (63646437-63646282) | |
| 195-409, gnl|hg17|chr8 (17146909-17147072) | |
| 195-409, gnl|Hg17|chr8 (17147130-17146915) | |
| 195-409, gnl|loxAfr1|scaffold_55914 (32743-32905) | |
| 195-409, gnl|mm7|chr8 (39300538-39300700) | |
| 195-409, gnl|Mm7|chr8 (39300759-39300544) | |
| 195-409, gnl|monDom2|scaffold_32 (13478359-13478194) | |
| 195-409, gnl|oryCun1|scaffold_198473 (39895-40056) | |
| 195-409, gnl|panTro1|chr7 (17906559-17906722) | |
| 195-409, gnl|rheMac2|chr8 (17114752-17114915) | |
| 195-409, gnl|rn3|chr16 (55120020-55119858) | |
| 195-409, gnl|tetNig1|chr7 (10579090-10578942) | |
| 195-409, gnl|xenTro1|scaffold_979 (329308-329145) | |
| 603-764, gnl|bosTau2|chr27 (12693901-12694062) | |
| 603-764, gnl|canFam2|chr16 (43520536-43520763) | |
| 603-764, gnl|canFam2|chr16 (43520726-43520568) | |
| 603-764, gnl|canFam2|chr16 (43520726-43520568) | |
| 603-764, gnl|danRer3|chr14 (30471690-30471910) | |
| 603-764, gnl|danRer3|chr14 (30471864-30471707) | |
| 603-764, gnl|danRer3|chr14 (30471864-30471707) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4364-4149) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4184-4342) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4184-4342) | |
| 603-764, gnl|echTel1|scaffold_160242 (1759-1909) | |
| 603-764, gnl|echTel1|scaffold_160242 (1759-1909) | |
| 603-764, gnl|echTel1|scaffold_289171 (7046-6829) | |
| 603-764, gnl|fr1|chrUn (108489043-108489215) | |
| 603-764, gnl|fr1|chrUn (108489211-108489054) | |
| 603-764, gnl|fr1|chrUn (108489211-108489054) | |
| 603-764, gnl|galGal2|chr4 (63649687-63649475) | |
| 603-764, gnl|galGal2|chr4 (63649509-63649666) | |
| 603-764, gnl|galGal2|chr4 (63649509-63649666) | |
| 603-764, gnl|hg17|chr1 (115819573-115819728) | |
| 603-764, gnl|hg17|chr1_random (3258623-3258778) | |
| 603-764, gnl|hg17|chr8 (17139073-17139291) | |
| 603-764, gnl|Hg17|chr8 (17139253-17139092) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2222-2006) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2041-2199) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2041-2199) | |
| 603-764, gnl|mm7|chr8 (39291265-39291479) | |
| 603-764, gnl|mm7|chr8 (39291443-39291286) | |
| 603-764, gnl|mm7|chr8 (39291443-39291286) | |
| 603-764, gnl|Mm7|chr8 (39291443-39291282) | |
| 603-764, gnl|monDom2|scaffold_32 (13484749-13484545) | |
| 603-764, gnl|monDom2|scaffold_36 (21313918-21313767) | |
| 603-764, gnl|monDom2|scaffold_36 (21313918-21313767) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4640-4480) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4479-4637) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4479-4637) | |
| 603-764, gnl|panTro1|chr1 (115627381-115627536) | |
| 603-764, gnl|panTro1|chr1 (115627381-115627536) | |
| 603-764, gnl|panTro1|chr7 (17898724-17898942) | |
| 603-764, gnl|rheMac2|chr8 (17106887-17107105) | |
| 603-764, gnl|rheMac2|chrX (68893316-68893158) | |
| 603-764, gnl|rheMac2|chrX (68893316-68893158) | |
| 603-764, gnl|rn3|chr16 (55128968-55128755) | |
| 603-764, gnl|rn3|chr16 (55128790-55128947) | |
| 603-764, gnl|rn3|chr16 (55128790-55128947) | |
| 603-764, gnl|tetNig1|chr7 (10579648-10579466) | |
| 603-764, gnl|tetNig1|chr7 (10579486-10579643) | |
| 603-764, gnl|tetNig1|chr7 (10579486-10579643) | |
| 603-764, gnl|xenTro1|scaffold_979 (332641-332425) | |
| 603-764, gnl|xenTro1|scaffold_979 (332464-332622) | |
| 603-764, gnl|xenTro1|scaffold_979 (332464-332622) | |
| 876-1019, gnl|bosTau2|chr14 (31905572-31905715) | |
| 876-1019, gnl|Hg17|chr5 (154231594-154232403) | |
| 876-1019, gnl|Mm7|chr8 (70172050-70171908) | |
| 1021-1968, gnl|bosTau2|chr27 (12699875-12700817) | |
| 1021-1968, gnl|Hg17|chr8 (17132728-17131790) | |
| 1021-1968, gnl|Mm7|chr8 (39284645-39283742) |
| Aligned organism(s): 76 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 195-409, gnl|bosTau2|chr27 (12688084-12688297) | |
| 195-409, gnl|canFam2|chr16 (43527615-43527776) | |
| 195-409, gnl|danRer3|chr14 (30474674-30474828) | |
| 195-409, gnl|dasNov1|scaffold_105654 (3437-3273) | |
| 195-409, gnl|echTel1|scaffold_296227 (566-404) | |
| 195-409, gnl|fr1|chrUn (108489681-108489823) | |
| 195-409, gnl|galGal2|chr4 (63646437-63646282) | |
| 195-409, gnl|hg17|chr8 (17146909-17147072) | |
| 195-409, gnl|Hg17|chr8 (17147130-17146915) | |
| 195-409, gnl|loxAfr1|scaffold_55914 (32743-32905) | |
| 195-409, gnl|mm7|chr8 (39300538-39300700) | |
| 195-409, gnl|Mm7|chr8 (39300759-39300544) | |
| 195-409, gnl|monDom2|scaffold_32 (13478359-13478194) | |
| 195-409, gnl|oryCun1|scaffold_198473 (39895-40056) | |
| 195-409, gnl|panTro1|chr7 (17906559-17906722) | |
| 195-409, gnl|rheMac2|chr8 (17114752-17114915) | |
| 195-409, gnl|rn3|chr16 (55120020-55119858) | |
| 195-409, gnl|tetNig1|chr7 (10579090-10578942) | |
| 195-409, gnl|xenTro1|scaffold_979 (329308-329145) | |
| 603-764, gnl|bosTau2|chr27 (12693901-12694062) | |
| 603-764, gnl|canFam2|chr16 (43520536-43520763) | |
| 603-764, gnl|canFam2|chr16 (43520726-43520568) | |
| 603-764, gnl|canFam2|chr16 (43520726-43520568) | |
| 603-764, gnl|danRer3|chr14 (30471690-30471910) | |
| 603-764, gnl|danRer3|chr14 (30471864-30471707) | |
| 603-764, gnl|danRer3|chr14 (30471864-30471707) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4364-4149) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4184-4342) | |
| 603-764, gnl|dasNov1|scaffold_11608 (4184-4342) | |
| 603-764, gnl|echTel1|scaffold_160242 (1759-1909) | |
| 603-764, gnl|echTel1|scaffold_160242 (1759-1909) | |
| 603-764, gnl|echTel1|scaffold_289171 (7046-6829) | |
| 603-764, gnl|fr1|chrUn (108489043-108489215) | |
| 603-764, gnl|fr1|chrUn (108489211-108489054) | |
| 603-764, gnl|fr1|chrUn (108489211-108489054) | |
| 603-764, gnl|galGal2|chr4 (63649687-63649475) | |
| 603-764, gnl|galGal2|chr4 (63649509-63649666) | |
| 603-764, gnl|galGal2|chr4 (63649509-63649666) | |
| 603-764, gnl|hg17|chr1 (115819573-115819728) | |
| 603-764, gnl|hg17|chr1_random (3258623-3258778) | |
| 603-764, gnl|hg17|chr8 (17139073-17139291) | |
| 603-764, gnl|Hg17|chr8 (17139253-17139092) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2222-2006) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2041-2199) | |
| 603-764, gnl|loxAfr1|scaffold_48502 (2041-2199) | |
| 603-764, gnl|mm7|chr8 (39291265-39291479) | |
| 603-764, gnl|mm7|chr8 (39291443-39291286) | |
| 603-764, gnl|mm7|chr8 (39291443-39291286) | |
| 603-764, gnl|Mm7|chr8 (39291443-39291282) | |
| 603-764, gnl|monDom2|scaffold_32 (13484749-13484545) | |
| 603-764, gnl|monDom2|scaffold_36 (21313918-21313767) | |
| 603-764, gnl|monDom2|scaffold_36 (21313918-21313767) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4640-4480) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4479-4637) | |
| 603-764, gnl|oryCun1|scaffold_116774 (4479-4637) | |
| 603-764, gnl|panTro1|chr1 (115627381-115627536) | |
| 603-764, gnl|panTro1|chr1 (115627381-115627536) | |
| 603-764, gnl|panTro1|chr7 (17898724-17898942) | |
| 603-764, gnl|rheMac2|chr8 (17106887-17107105) | |
| 603-764, gnl|rheMac2|chrX (68893316-68893158) | |
| 603-764, gnl|rheMac2|chrX (68893316-68893158) | |
| 603-764, gnl|rn3|chr16 (55128968-55128755) | |
| 603-764, gnl|rn3|chr16 (55128790-55128947) | |
| 603-764, gnl|rn3|chr16 (55128790-55128947) | |
| 603-764, gnl|tetNig1|chr7 (10579648-10579466) | |
| 603-764, gnl|tetNig1|chr7 (10579486-10579643) | |
| 603-764, gnl|tetNig1|chr7 (10579486-10579643) | |
| 603-764, gnl|xenTro1|scaffold_979 (332641-332425) | |
| 603-764, gnl|xenTro1|scaffold_979 (332464-332622) | |
| 603-764, gnl|xenTro1|scaffold_979 (332464-332622) | |
| 876-1019, gnl|bosTau2|chr14 (31905572-31905715) | |
| 876-1019, gnl|Hg17|chr5 (154231594-154232403) | |
| 876-1019, gnl|Mm7|chr8 (70172050-70171908) | |
| 1021-1968, gnl|bosTau2|chr27 (12699875-12700817) | |
| 1021-1968, gnl|Hg17|chr8 (17132728-17131790) | |
| 1021-1968, gnl|Mm7|chr8 (39284645-39283742) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| vin (0.665115) | |
| clu (0.478583) | |
| cty (0.41632) | |
| bla (0.373042) | |
| gul (0.355177) | |
| lun (0.300978) | |
| cte (0.29274) | |
| pty (0.285429) | |
| csk (0.281492) | |
| ova (0.258264) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| ecc (0.115035) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.665115) | |
| clu (0.478583) | |
| cty (0.41632) | |
| bla (0.373042) | |
| gul (0.355177) | |
| lun (0.300978) | |
| cte (0.29274) | |
| pty (0.285429) | |
| csk (0.281492) | |
| ova (0.258264) | |
| tes (0.207814) | |
| hea (0.204499) | |
| nje (0.16592) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| isp (0.150376) | |
| ski (0.146735) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| cbr (0.127975) | |
| sug (0.127291) | |
| tra (0.123092) | |
| med (0.116252) | |
| ecc (0.115035) |