Non-Coding RNA Search

Ss1.1-Utr1-UTR010048G07.5

Sequence:


               
               AGAGCGGCCATGGCGGGGCCTCTGAGTGCCAGTGGTGGTGTTGTCCCTTGTCATCTGGAA
CCCCATGCAACCGGAACCCAGGCCTAGTGGGGCTGGGGCACACACCCAATTTCTGCCCCT
GAGGTCACAGCGCCCCGAAGGGGCAGGGGACACGGTGATGTACGCCTCCACGGAGTGCAA
GGCTGAGGTGACCCCCTCGCAGCACGGCAACCGCACCTTTAGCTACACGCTGGAGGACCA
CACCAAGCAAGCCTTTGGCATCATGAATGAACTGCGGCTCAGCCAACAGCTATGCGATGT
TACGCTGCAGGTCAAGTACGAGGATGCACCAGCTGCCCAGTTCATGGCCCACAAGGTGGT
GCTGGCTTCATCCAGCCCTGTCTTCAAGGCTATGTTCACCAACGGGCTGCGGGAGCAGGG
CATGGAGGTGGTGTCCATTGAGGGGATCCACCCTAAGGTCATGGAGCGCCTCATCGAGTT
CGCTTACACGGCCTCCATCTCCATGGGTGAGAAGTGTGTGCTCCATGTCATGAATGGTGC
TGTCATGTACCAGATTGACAGTGTGGTCCGTGCCTGCAGCGACTTCCTGGTGCAGCAGCT
GGACCCCAGCAATGCCATTGGCATTGCCAACTTCGCCGAGCAGATTGGCTGTGCCGAGCT
ACACCAGCGTGCCCGAGAGTACATCTACATGCACTTTGGGGAGGTGGCCAAGCAAGAGGA
ATTCTTCAATTTGTCCCACTGCCAGCTGGTGACCCTCATTAGCCGGGACGATCTGAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCGGCCATGGCGGGGCCTCTGAGTGCCAGTGGTGGTGTTGTCCCTTGTCATCTGGAA
CCCCATGCAACCGGAACCCAGGCCTAGTGGGGCTGGGGCACACACCCAATTTCTGCCCCT
GAGGTCACAGCGCCCCGAAGGGGCAGGGGACACGGTGATGTACGCCTCCACGGAGTGCAA
GGCTGAGGTGACCCCCTCGCAGCACGGCAACCGCACCTTTAGCTACACGCTGGAGGACCA
CACCAAGCAAGCCTTTGGCATCATGAATGAACTGCGGCTCAGCCAACAGCTATGCGATGT
TACGCTGCAGGTCAAGTACGAGGATGCACCAGCTGCCCAGTTCATGGCCCACAAGGTGGT
GCTGGCTTCATCCAGCCCTGTCTTCAAGGCTATGTTCACCAACGGGCTGCGGGAGCAGGG
CATGGAGGTGGTGTCCATTGAGGGGATCCACCCTAAGGTCATGGAGCGCCTCATCGAGTT
CGCTTACACGGCCTCCATCTCCATGGGTGAGAAGTGTGTGCTCCATGTCATGAATGGTGC
TGTCATGTACCAGATTGACAGTGTGGTCCGTGCCTGCAGCGACTTCCTGGTGCAGCAGCT
GGACCCCAGCAATGCCATTGGCATTGCCAACTTCGCCGAGCAGATTGGCTGTGCCGAGCT
ACACCAGCGTGCCCGAGAGTACATCTACATGCACTTTGGGGAGGTGGCCAAGCAAGAGGA
ATTCTTCAATTTGTCCCACTGCCAGCTGGTGACCCTCATTAGCCGGGACGATCTGAATGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55648245|ref|XP_512372.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55648245|ref|XP_512372.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               337-456, - strand, RNAz p=0.978255
               

               
               577-706, + strand, RNAz p=0.900833

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               337-456, - strand, RNAz p=0.978255
               

               
               577-706, + strand, RNAz p=0.900833

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_203500, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_203500, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               17-706, gnl|bosTau2|chr7 (10871393-10870704)
               

               
               17-706, gnl|Hg17|chr19 (10471757-10471068)
               

               
               17-706, gnl|Mm7|chr9 (21114315-21113626)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-706, gnl|bosTau2|chr7 (10871393-10870704)
               

               
               17-706, gnl|Hg17|chr19 (10471757-10471068)
               

               
               17-706, gnl|Mm7|chr9 (21114315-21113626)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)

	337-456, - strand, RNAz p=0.978255
	577-706, + strand, RNAz p=0.900833

	17-706, gnl\|bosTau2\|chr7 (10871393-10870704)
	17-706, gnl\|Hg17\|chr19 (10471757-10471068)
	17-706, gnl\|Mm7\|chr9 (21114315-21113626)