Non-Coding RNA Search

Ss1.1-Utr1-UTR010048H03.5

Sequence:


               
               TCCCTGGCCACGTCGCGCCCGCTCTCGCCATCTTTCGCCGCTTCCTCTTCGGGGCTGCTG
CAGCTGCCTGAGCCGCCGAGCCTGGGGCCACCGCGCCGACCGCCGTCGCCATGAACATCT
TCCGGCTGACCGGGGACCTGTCCCACCTGGCGGCCATCGTCATCCTGCTGCTGAAGATCT
GGAAGACGCGCTCCTGCGCGGGTATTTCTGGGAAAAGCCAGCTTCTGTTTGCACTGGTCT
TCACAACACGTTACCTGGATCTTTTTACTTCATTTATTTCATTATATAACACGTCTATGA
AGCTCATCTACATTGCCTGCTCCTATGCCACCGTGTACCTGATCTACATGAAATTTAAGG
CAACCTACGACGGAAATCATGATACCTTCCGAGTGGAGTTTCTGGTGGTCCCTGTGGGAG
GCCTCTCGTTTCTAGTCAATCACGATTTCTCTCCTCTTGAGATTCTGTGGACCTTCTCCA
TCTACCTTGAGTCCGTGGCTATCCTGCCGCAGCTCTTCATGATCAGCAAGACGGGGGAGG
CGGAGACCATCACCACCCACTACCTGTTCTTCCTGGGCCTCTACCGCGCCTTGTACCTCG
TCAACTGGATCTGGCGCTTCTACTTCGAGGGCTTCTTCGACCTCATCGCCGTGGTGGCCG
GCGTTGTCCAGACCATCCTGTACTGCGACTTCTTCTACTTGTACATCACAAAAGTCCTCA
AGGGGAAGAAGCTCAGTCTGCCAGCCTAAGTGCCAAAGACCATCACCAGCATCTGCCCTT
CAGGTGCTCGGACAGGATTCTTACCACAGCAGAGGCACAAGATGCTTGACACGGAACATC
AGAAACGCCACTCTTCTGTTGCAGATGGTCACCGTGGCTCTGTGCGAACCCAGAGGGAAA
GAACCAGAAGGTTTCTGTTTAATGCATCTTGCCTTATCTTTTTTTATTACTATGTACAAA
GATTTTTTTACACAAAGAAACTTAATGCTGTATTAATAAATTCAGTGTGTAGCTTCAAAA
AAAAAAAAAAAAAAAGTGAAGGTTTCGTGAGGAATAAGTGCAAACTTTTTTTTTTTTTTT
TTTTTTTAATTCTTGGAAATTCTTGATTCTTTGTGTCTGCAATGAAATTGTACTCCTTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCCTGGCCACGTCGCGCCCGCTCTCGCCATCTTTCGCCGCTTCCTCTTCGGGGCTGCTG
CAGCTGCCTGAGCCGCCGAGCCTGGGGCCACCGCGCCGACCGCCGTCGCCATGAACATCT
TCCGGCTGACCGGGGACCTGTCCCACCTGGCGGCCATCGTCATCCTGCTGCTGAAGATCT
GGAAGACGCGCTCCTGCGCGGGTATTTCTGGGAAAAGCCAGCTTCTGTTTGCACTGGTCT
TCACAACACGTTACCTGGATCTTTTTACTTCATTTATTTCATTATATAACACGTCTATGA
AGCTCATCTACATTGCCTGCTCCTATGCCACCGTGTACCTGATCTACATGAAATTTAAGG
CAACCTACGACGGAAATCATGATACCTTCCGAGTGGAGTTTCTGGTGGTCCCTGTGGGAG
GCCTCTCGTTTCTAGTCAATCACGATTTCTCTCCTCTTGAGATTCTGTGGACCTTCTCCA
TCTACCTTGAGTCCGTGGCTATCCTGCCGCAGCTCTTCATGATCAGCAAGACGGGGGAGG
CGGAGACCATCACCACCCACTACCTGTTCTTCCTGGGCCTCTACCGCGCCTTGTACCTCG
TCAACTGGATCTGGCGCTTCTACTTCGAGGGCTTCTTCGACCTCATCGCCGTGGTGGCCG
GCGTTGTCCAGACCATCCTGTACTGCGACTTCTTCTACTTGTACATCACAAAAGTCCTCA
AGGGGAAGAAGCTCAGTCTGCCAGCCTAAGTGCCAAAGACCATCACCAGCATCTGCCCTT
CAGGTGCTCGGACAGGATTCTTACCACAGCAGAGGCACAAGATGCTTGACACGGAACATC
AGAAACGCCACTCTTCTGTTGCAGATGGTCACCGTGGCTCTGTGCGAACCCAGAGGGAAA
GAACCAGAAGGTTTCTGTTTAATGCATCTTGCCTTATCTTTTTTTATTACTATGTACAAA
GATTTTTTTACACAAAGAAACTTAATGCTGTATTAATAAATTCAGTGTGTAGCTTCAAAA
AAAAAAAAAAAAAAAGTGAAGGTTTCGTGAGGAATAAGTGCAAACTTTTTTTTTTTTTTT
TTTTTTTAATTCTTGGAAATTCTTGATTCTTTGTGTCTGCAATGAAATTGTACTCCTTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61557025|ref|NP_001013140.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61557025|ref|NP_001013140.1|

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-221, gnl|bosTau2|chr25 (33404855-33404630)
               


               
               460-714, gnl|bosTau2|chr18 (50414702-50414956)
               

               
               460-714, gnl|Hg17|chr19 (53579553-53579299)
               

               
               460-714, gnl|Mm7|chr7 (42057732-42057986)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-221, gnl|bosTau2|chr25 (33404855-33404630)
               


               
               460-714, gnl|bosTau2|chr18 (50414702-50414956)
               

               
               460-714, gnl|Hg17|chr19 (53579553-53579299)
               

               
               460-714, gnl|Mm7|chr7 (42057732-42057986)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               nep (0.36785)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.36785)
               

               
               cte (0.29274)
               

               
               nca (0.273748)
               

               
               sto (0.179824)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               cli (0.152812)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               jca (0.11396)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)

	1-221, gnl\|bosTau2\|chr25 (33404855-33404630)

	460-714, gnl\|bosTau2\|chr18 (50414702-50414956)
	460-714, gnl\|Hg17\|chr19 (53579553-53579299)
	460-714, gnl\|Mm7\|chr7 (42057732-42057986)

	nep (0.36785)
	cte (0.29274)
	nca (0.273748)
	sto (0.179824)
	rec (0.17307)
	cje (0.165235)
	mga (0.160205)
	cli (0.152812)
	pty (0.142714)
	cst (0.140036)
	cov (0.132153)
	ova (0.129132)
	jca (0.11396)
	nbm (0.0993246)
	jej (0.0989218)