Non-Coding RNA Search

Ss1.1-Utr1-UTR010049A10.5

Sequence:


               
               TGCAACCCAGACAAACCAACTCACTGGGAGAAGATGCCTGGGGGTCGCCGAGCCCTCCAA
ACCCCACCTGCCACCATCTTTCTCCTCTTGATCTCCGCAGCTGCCCTGGGCCCTTGTTGC
CAGGCCCTGTGGGTGGACTGGGGCCCGCCATCGGTGACGGTGAGTGTGGGGGACAAGGTC
AGCCTCCCATGCAGACACAACAGCAACAGCACTAACATCACCTGGTGGCGCGTCCCTCAA
GGCAACTCCACGTGGCCCCCGGTCATGGATCTCTCAGAACTGGGCCCCAAGGGCGAGCTG
ATCATCCAGCAAGTGAACAAGAGCCACAGGGGCATGTACAGGTGCGAAGTCAACGAGGGC
CAGAGGATTCAGCGCTCCTGTGGGACCTACCTCCGCGTGCGAGACCCCCTCCCCAGGCCC
TTCCTGGACATGGGGGAGGGGACCAAGAACAACATCATCACAGCTGAGGGGATCATCCTG
CTGATCTGTGCCGTGGTGCCTGGGACGCTGCTGCTGTTCAGGAAACGATGGCAGAATGTG
AAATTCGGGGCGGATGTCCAGGATGATTATGATGATGAAAATCTTTACGAGGGCCTGAAC
CTTGATGACTGCTCCATGTATGAGGATATCTCCCGGGGCCTCCAGGGCACCTACCAGGAC
GTGGGCAGCCTCCACATCGGAGACGTCCAGCTAGAGAAGCCGTGACCCCGCCTGACCCAG
CCCGGCTGCCCTGCCAACTGGGCACCCAACCCACGTCTCACTCGCATCTTCCCTGGAACC
AGCTCTTTTTTCACAGTCTTTTCTGGGTGTGTCCTGACAACTTCCCTCTTGGGAGTGTCC
ACTATTCTTCCCTCTGGACTGTCCTCATCCCCTCCGTCACTCAATCCTCCTCCTGCTGCC
TCGCCCAGGCTCCCACCCCCACCCCTTCGCCCCCAGTGGGTAATGAGCCCTTAATCTCTG
CCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCTCCCCCATCCCTGCTCTGC
CATGGCCACTTAGTGATAATAAATCCTTCCCAACTGCAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAACCCAGACAAACCAACTCACTGGGAGAAGATGCCTGGGGGTCGCCGAGCCCTCCAA
ACCCCACCTGCCACCATCTTTCTCCTCTTGATCTCCGCAGCTGCCCTGGGCCCTTGTTGC
CAGGCCCTGTGGGTGGACTGGGGCCCGCCATCGGTGACGGTGAGTGTGGGGGACAAGGTC
AGCCTCCCATGCAGACACAACAGCAACAGCACTAACATCACCTGGTGGCGCGTCCCTCAA
GGCAACTCCACGTGGCCCCCGGTCATGGATCTCTCAGAACTGGGCCCCAAGGGCGAGCTG
ATCATCCAGCAAGTGAACAAGAGCCACAGGGGCATGTACAGGTGCGAAGTCAACGAGGGC
CAGAGGATTCAGCGCTCCTGTGGGACCTACCTCCGCGTGCGAGACCCCCTCCCCAGGCCC
TTCCTGGACATGGGGGAGGGGACCAAGAACAACATCATCACAGCTGAGGGGATCATCCTG
CTGATCTGTGCCGTGGTGCCTGGGACGCTGCTGCTGTTCAGGAAACGATGGCAGAATGTG
AAATTCGGGGCGGATGTCCAGGATGATTATGATGATGAAAATCTTTACGAGGGCCTGAAC
CTTGATGACTGCTCCATGTATGAGGATATCTCCCGGGGCCTCCAGGGCACCTACCAGGAC
GTGGGCAGCCTCCACATCGGAGACGTCCAGCTAGAGAAGCCGTGACCCCGCCTGACCCAG
CCCGGCTGCCCTGCCAACTGGGCACCCAACCCACGTCTCACTCGCATCTTCCCTGGAACC
AGCTCTTTTTTCACAGTCTTTTCTGGGTGTGTCCTGACAACTTCCCTCTTGGGAGTGTCC
ACTATTCTTCCCTCTGGACTGTCCTCATCCCCTCCGTCACTCAATCCTCCTCCTGCTGCC
TCGCCCAGGCTCCCACCCCCACCCCTTCGCCCCCAGTGGGTAATGAGCCCTTAATCTCTG
CCTCTAGGGGAGCTGATTGTAGCAGCCTCGTTAGTGTCACCTCCCCCATCCCTGCTCTGC
CATGGCCACTTAGTGATAATAAATCCTTCCCAACTGCAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|728993|sp|P40293|C79A_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|728993|sp|P40293|C79A_BOVIN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               876-981, - strand, RNAz p=0.996909

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               876-981, - strand, RNAz p=0.996909

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               109-403, gnl|bosTau2|chr18 (44636899-44637193)
               

               
               109-403, gnl|canFam2|chr1 (115321832-115321432)
               

               
               109-403, gnl|dasNov1|scaffold_127751 (989-1437)
               

               
               109-403, gnl|echTel1|scaffold_265777 (5989-6405)
               

               
               109-403, gnl|hg17|chr19 (47074742-47075207)
               

               
               109-403, gnl|Hg17|chr19 (47074899-47075199)
               

               
               109-403, gnl|loxAfr1|scaffold_85839 (8556-9082)
               

               
               109-403, gnl|mm7|chr7 (21688505-21688884)
               

               
               109-403, gnl|Mm7|chr7 (21688582-21688876)
               

               
               109-403, gnl|panTro1|chr20 (43953748-43954279)
               

               
               109-403, gnl|rn3|chr1 (80269133-80269516)
               


               
               590-1058, gnl|bosTau2|chr18 (44638646-44639107)
               

               
               590-1058, gnl|Hg17|chr19 (47076772-47077279)
               

               
               590-1058, gnl|Mm7|chr7 (21690917-21691346)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-403, gnl|bosTau2|chr18 (44636899-44637193)
               

               
               109-403, gnl|canFam2|chr1 (115321832-115321432)
               

               
               109-403, gnl|dasNov1|scaffold_127751 (989-1437)
               

               
               109-403, gnl|echTel1|scaffold_265777 (5989-6405)
               

               
               109-403, gnl|hg17|chr19 (47074742-47075207)
               

               
               109-403, gnl|Hg17|chr19 (47074899-47075199)
               

               
               109-403, gnl|loxAfr1|scaffold_85839 (8556-9082)
               

               
               109-403, gnl|mm7|chr7 (21688505-21688884)
               

               
               109-403, gnl|Mm7|chr7 (21688582-21688876)
               

               
               109-403, gnl|panTro1|chr20 (43953748-43954279)
               

               
               109-403, gnl|rn3|chr1 (80269133-80269516)
               


               
               590-1058, gnl|bosTau2|chr18 (44638646-44639107)
               

               
               590-1058, gnl|Hg17|chr19 (47076772-47077279)
               

               
               590-1058, gnl|Mm7|chr7 (21690917-21691346)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               csp (0.644745)
               

               
               cag (0.604778)
               

               
               lnt (0.284616)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cly (0.120642)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.644745)
               

               
               cag (0.604778)
               

               
               lnt (0.284616)
               

               
               cty (0.20816)
               

               
               fty (0.17584)
               

               
               cli (0.152812)
               

               
               cly (0.120642)

	109-403, gnl\|bosTau2\|chr18 (44636899-44637193)
	109-403, gnl\|canFam2\|chr1 (115321832-115321432)
	109-403, gnl\|dasNov1\|scaffold_127751 (989-1437)
	109-403, gnl\|echTel1\|scaffold_265777 (5989-6405)
	109-403, gnl\|hg17\|chr19 (47074742-47075207)
	109-403, gnl\|Hg17\|chr19 (47074899-47075199)
	109-403, gnl\|loxAfr1\|scaffold_85839 (8556-9082)
	109-403, gnl\|mm7\|chr7 (21688505-21688884)
	109-403, gnl\|Mm7\|chr7 (21688582-21688876)
	109-403, gnl\|panTro1\|chr20 (43953748-43954279)
	109-403, gnl\|rn3\|chr1 (80269133-80269516)

	590-1058, gnl\|bosTau2\|chr18 (44638646-44639107)
	590-1058, gnl\|Hg17\|chr19 (47076772-47077279)
	590-1058, gnl\|Mm7\|chr7 (21690917-21691346)

	csp (0.644745)
	cag (0.604778)
	lnt (0.284616)
	cty (0.20816)
	fty (0.17584)
	cli (0.152812)
	cly (0.120642)