Non-Coding RNA Search

Ss1.1-Utr1-UTR010049C01.5

Sequence:


               
               CTACTGGTGGAAAACTGGCCAGGAACCAGGAAGCCTCGGGGCCATGGCTGGGAAGGATGG
TAAGACGCCACCCGCAGAGAGGCTGGAGTCTGGGGTGCCTCCAGGAGGGGACCAGCTCTC
CAGAGCCCACCCTAGCCGTGAGCCCAGGGGTGCTCTTTCTGGGAGGGCAGAGAGGTCGGA
CTTGCAGAGGGACCTGAGGAGGGAGGCCTCTCTGGCTCGGCTTGGGTCGTGACCCTTGGG
GCTGCTGCGGCTCCTGTGGATCTGTTGTTCTGTGTCCTCCCCCTCCCCCCCTCCCCCCGT
TTTCTGTTTCCCTCCTGTGTCCCCTTCCACTGTCGTCACATCACTGTCCCTGGCCCCACG
CAGTGGGTTAAGGATCTGGTGTTGCCGGGAGCTGTGGTGTAGGTCACAGAGCGGAACTAT
CTCAGCGCCATTTTCAACAACGTCATGACCTTGTGTGCCATGCTGCCCCTGCTGCTGTTC
ACCTGCCTCAACTCCTTCCTGCATCAGAGGTGAGCCCCCCATCCCTCGCTGCCTCCTGCC
CTCCCCCCACTGAGCCCCTGCCCTGTCTTCACCGCCCGTCTCTGCCACCGCCACTGTCAC
GGCCTCTCCGCAGGATCCCCCAGTCTGTTCGGATTCTGGGCAGCCTGGTGGCCATCCTGC
TGGTGTTCCTGATCACTGCCATCCTGGTGAAAGTGTCCCTGGACCCTCTGCCCTTCTTTG
TCATCACCATGATCAAGATCATGCTCATTAACTGTAAGCGGGGTGGGGAGAGCTTCCCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACTGGTGGAAAACTGGCCAGGAACCAGGAAGCCTCGGGGCCATGGCTGGGAAGGATGG
TAAGACGCCACCCGCAGAGAGGCTGGAGTCTGGGGTGCCTCCAGGAGGGGACCAGCTCTC
CAGAGCCCACCCTAGCCGTGAGCCCAGGGGTGCTCTTTCTGGGAGGGCAGAGAGGTCGGA
CTTGCAGAGGGACCTGAGGAGGGAGGCCTCTCTGGCTCGGCTTGGGTCGTGACCCTTGGG
GCTGCTGCGGCTCCTGTGGATCTGTTGTTCTGTGTCCTCCCCCTCCCCCCCTCCCCCCGT
TTTCTGTTTCCCTCCTGTGTCCCCTTCCACTGTCGTCACATCACTGTCCCTGGCCCCACG
CAGTGGGTTAAGGATCTGGTGTTGCCGGGAGCTGTGGTGTAGGTCACAGAGCGGAACTAT
CTCAGCGCCATTTTCAACAACGTCATGACCTTGTGTGCCATGCTGCCCCTGCTGCTGTTC
ACCTGCCTCAACTCCTTCCTGCATCAGAGGTGAGCCCCCCATCCCTCGCTGCCTCCTGCC
CTCCCCCCACTGAGCCCCTGCCCTGTCTTCACCGCCCGTCTCTGCCACCGCCACTGTCAC
GGCCTCTCCGCAGGATCCCCCAGTCTGTTCGGATTCTGGGCAGCCTGGTGGCCATCCTGC
TGGTGTTCCTGATCACTGCCATCCTGGTGAAAGTGTCCCTGGACCCTCTGCCCTTCTTTG
TCATCACCATGATCAAGATCATGCTCATTAACTGTAAGCGGGGTGGGGAGAGCTTCCCAT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               8-125, - strand, RNAz p=0.810342
               

               
               547-663, - strand, RNAz p=0.850656

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-125, - strand, RNAz p=0.810342
               

               
               547-663, - strand, RNAz p=0.850656

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               8-215, gnl|bosTau2|chr23 (18172585-18172786)
               

               
               8-215, gnl|canFam2|chr12 (15640532-15640877)
               

               
               8-215, gnl|hg17|chr6 (44302225-44302522)
               

               
               8-215, gnl|Hg17|chr6 (44302265-44302445)
               

               
               8-215, gnl|loxAfr1|scaffold_111218 (13-309)
               

               
               8-215, gnl|mm7|chr17 (43722404-43722095)
               

               
               8-215, gnl|monDom2|scaffold_0 (196603510-196603173)
               

               
               8-215, gnl|oryCun1|scaffold_187839 (4953-5175)
               

               
               8-215, gnl|panTro1|chr5 (44909916-44910213)
               

               
               8-215, gnl|rheMac2|chr4 (44145510-44145810)
               

               
               8-215, gnl|rn3|chr9 (11003676-11003953)
               


               
               407-767, gnl|bosTau2|chr23 (18175616-18175978)
               

               
               407-767, gnl|Hg17|chr6 (44305404-44305776)
               

               
               407-767, gnl|Mm7|chr17 (43719429-43719070)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-215, gnl|bosTau2|chr23 (18172585-18172786)
               

               
               8-215, gnl|canFam2|chr12 (15640532-15640877)
               

               
               8-215, gnl|hg17|chr6 (44302225-44302522)
               

               
               8-215, gnl|Hg17|chr6 (44302265-44302445)
               

               
               8-215, gnl|loxAfr1|scaffold_111218 (13-309)
               

               
               8-215, gnl|mm7|chr17 (43722404-43722095)
               

               
               8-215, gnl|monDom2|scaffold_0 (196603510-196603173)
               

               
               8-215, gnl|oryCun1|scaffold_187839 (4953-5175)
               

               
               8-215, gnl|panTro1|chr5 (44909916-44910213)
               

               
               8-215, gnl|rheMac2|chr4 (44145510-44145810)
               

               
               8-215, gnl|rn3|chr9 (11003676-11003953)
               


               
               407-767, gnl|bosTau2|chr23 (18175616-18175978)
               

               
               407-767, gnl|Hg17|chr6 (44305404-44305776)
               

               
               407-767, gnl|Mm7|chr17 (43719429-43719070)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               nca (0.136874)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)

	8-125, - strand, RNAz p=0.810342
	547-663, - strand, RNAz p=0.850656

	8-215, gnl\|bosTau2\|chr23 (18172585-18172786)
	8-215, gnl\|canFam2\|chr12 (15640532-15640877)
	8-215, gnl\|hg17\|chr6 (44302225-44302522)
	8-215, gnl\|Hg17\|chr6 (44302265-44302445)
	8-215, gnl\|loxAfr1\|scaffold_111218 (13-309)
	8-215, gnl\|mm7\|chr17 (43722404-43722095)
	8-215, gnl\|monDom2\|scaffold_0 (196603510-196603173)
	8-215, gnl\|oryCun1\|scaffold_187839 (4953-5175)
	8-215, gnl\|panTro1\|chr5 (44909916-44910213)
	8-215, gnl\|rheMac2\|chr4 (44145510-44145810)
	8-215, gnl\|rn3\|chr9 (11003676-11003953)

	407-767, gnl\|bosTau2\|chr23 (18175616-18175978)
	407-767, gnl\|Hg17\|chr6 (44305404-44305776)
	407-767, gnl\|Mm7\|chr17 (43719429-43719070)