Non-Coding RNA Search

Ss1.1-Utr1-UTR010049C02.5

Sequence:


               
               AAAAAAAAAAAAGCTATGAGAATGTCAAGAGAGTTCAGATGTTGTTGCTCTGTCTCTAGA
CTCCTTCCCATAAATAGTTATTATTGATCAGTGCATCAGTTTGAACTAATCCTGTTTTGG
TCCTTCTAGTAAGTTAGGATTACTTTCTGAGACTGTTAAAATTGGCCAGGTTCAGAAATT
CCATTGTTCCTTAGGCTTGTCTGTACATTCCAGGTTCCGGGCCTCACTCTATCCCTGTCC
TGAGACGCCACAGGAGAGGAAGGAAATGGCTTCTGGAGTTAATACCAGGATTGACGATCT
CCAAATGGTACACAGAGGCCTGGAGGGGATTTGTTTTTGTAAAATGCTGTTACAGAAGAC
AACCCTGAGACACTAACAATTAACTTATTAGCACCTGCAGCAGCTCAGGATACTTTTATT
TTGCTGTTAAGTCATTCGCTGAAACTTTTCCCCAGCTTCAATGGGGGATGACTTGACAAT
GGCGTTAGTCATCTTCAAATAAGACAGGGGTGCTGTGCGTATGAAGTCCCCTCCTCATGA
ATCTAACAAAGTAAACTTAGTTAAGAAAGTAAATCAAATAATACAGAAGTACGTATAAAG
TCAGTTCTGCCTCTCACACTCAAACTCTGCCTCCAGAGGCAGCCACTCTTAACAGCTTGG
TATGTACCTTTCTGGTCACCATGGATCTGAACCACAGAGTCCTGGTGTAACTCTTGTACC
CTAGAAGAGACTTCGTTAGATTTTTACCAAATCGCAGTGTGTGTGGTTTGCACACACCGT
GGGTTGTCACAGGGCTCTAAGGAAGGAGTCATGACATTTGCATTCACGTAAGGAAGAGGG
TACCCAGTTGGAGCCTTGTTCCCTGTCATTAGAGTGTGGTGATTGCCCCCTTAAACATTG
ATAAACATACTTAATCCCAAAGGCAGTTCTTCTCAGCAGTGGCAGAATTGTCAGAGATAT
GCTGTAACTCCCATTTCAACATCTTTTCTCATCTTTCCCTCCAACGCTGTTGTATATATG
ACCCACCAACTTGATGTATTGCCAGCTCCTTTCAGATGCACATAACTGTTTAACCAAAGG
AAGAGAATGTTTTAAGAACTGCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAGCTATGAGAATGTCAAGAGAGTTCAGATGTTGTTGCTCTGTCTCTAGA
CTCCTTCCCATAAATAGTTATTATTGATCAGTGCATCAGTTTGAACTAATCCTGTTTTGG
TCCTTCTAGTAAGTTAGGATTACTTTCTGAGACTGTTAAAATTGGCCAGGTTCAGAAATT
CCATTGTTCCTTAGGCTTGTCTGTACATTCCAGGTTCCGGGCCTCACTCTATCCCTGTCC
TGAGACGCCACAGGAGAGGAAGGAAATGGCTTCTGGAGTTAATACCAGGATTGACGATCT
CCAAATGGTACACAGAGGCCTGGAGGGGATTTGTTTTTGTAAAATGCTGTTACAGAAGAC
AACCCTGAGACACTAACAATTAACTTATTAGCACCTGCAGCAGCTCAGGATACTTTTATT
TTGCTGTTAAGTCATTCGCTGAAACTTTTCCCCAGCTTCAATGGGGGATGACTTGACAAT
GGCGTTAGTCATCTTCAAATAAGACAGGGGTGCTGTGCGTATGAAGTCCCCTCCTCATGA
ATCTAACAAAGTAAACTTAGTTAAGAAAGTAAATCAAATAATACAGAAGTACGTATAAAG
TCAGTTCTGCCTCTCACACTCAAACTCTGCCTCCAGAGGCAGCCACTCTTAACAGCTTGG
TATGTACCTTTCTGGTCACCATGGATCTGAACCACAGAGTCCTGGTGTAACTCTTGTACC
CTAGAAGAGACTTCGTTAGATTTTTACCAAATCGCAGTGTGTGTGGTTTGCACACACCGT
GGGTTGTCACAGGGCTCTAAGGAAGGAGTCATGACATTTGCATTCACGTAAGGAAGAGGG
TACCCAGTTGGAGCCTTGTTCCCTGTCATTAGAGTGTGGTGATTGCCCCCTTAAACATTG
ATAAACATACTTAATCCCAAAGGCAGTTCTTCTCAGCAGTGGCAGAATTGTCAGAGATAT
GCTGTAACTCCCATTTCAACATCTTTTCTCATCTTTCCCTCCAACGCTGTTGTATATATG
ACCCACCAACTTGATGTATTGCCAGCTCCTTTCAGATGCACATAACTGTTTAACCAAAGG
AAGAGAATGTTTTAAGAACTGCTA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               19-528, gnl|bosTau2|chr19 (38877529-38877015)
               

               
               19-528, gnl|Hg17|chr17 (37888090-37888908)
               

               
               19-528, gnl|Mm7|chr11 (101139259-101139772)
               


               
               544-908, gnl|bosTau2|chr19 (38876937-38876573)
               

               
               544-908, gnl|Hg17|chr17 (37889928-37890300)
               

               
               544-908, gnl|Mm7|chr11 (101139846-101140213)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               19-528, gnl|bosTau2|chr19 (38877529-38877015)
               

               
               19-528, gnl|Hg17|chr17 (37888090-37888908)
               

               
               19-528, gnl|Mm7|chr11 (101139259-101139772)
               


               
               544-908, gnl|bosTau2|chr19 (38876937-38876573)
               

               
               544-908, gnl|Hg17|chr17 (37889928-37890300)
               

               
               544-908, gnl|Mm7|chr11 (101139846-101140213)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               eli (0.151814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)

	19-528, gnl\|bosTau2\|chr19 (38877529-38877015)
	19-528, gnl\|Hg17\|chr17 (37888090-37888908)
	19-528, gnl\|Mm7\|chr11 (101139259-101139772)

	544-908, gnl\|bosTau2\|chr19 (38876937-38876573)
	544-908, gnl\|Hg17\|chr17 (37889928-37890300)
	544-908, gnl\|Mm7\|chr11 (101139846-101140213)