Ss1.1-Utr1-UTR010049E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGACTGCGTCAGTAGGACGCGCGCCGTGGGAAGCCTGACGATCCTCATGGCTGCGGGT TGCTCAGAGGCTTCACGGCCAAAGGCGGCCTCGGAAGGGCCGGGGGTGGGACCGGCCGGT GTCTTGCCTTGCCTAGAGCTGCCGACCTATGCGGCCGCTTGTGCGCTGGTGAGCAGCCGC TACTCCTGCCTCGTGGCGGGGCCGCACCGGAGACACATCGCATTGTCGCCGCGCTACCTT AACAGGAAACGCACCGGTATCCGAGAACAGCTGGATGCAGAACTCCTGCGTTATTCCGAG AGCCTTTTAGGTGTACCCATTGCCTATGATAACATCAAAGTAGTGGGTGAACTAGGAGAT ATTTATGATGATCAAGGACACATTCATCTTAACATTGAAGCAGATTTTGTTATTTTCTGC CCTGAACCAGGGCAAAAGCTTATGGGTACAATTAATAAAGTGTCTTCCAGCCATATTGGC TGTTTAGTACATGGGTGCTTCAATGCCTCCATTCCTAAACCCGAGCAGATGCCAGCTGAG CAGTGGCAGACTCTGGAGATAAATGTGGGTGATGAACTAGAATTTGAAGTATTTCGCTTA GACTCAGACGCTGCTGGAGTATTCTGCATTCGTGGGAAAGTAAATGTTTCTAGTTTACAA ACCAAATGCCCTGCTATTCCTGAAGTAACAGAAACTGCCACCGAAGAAGCGGCTGTTGAG AAACCTCCAAAGAAGAAAAAGAAAAAGAAGAAAGACCCAGAGCCATGTGAAGCAGAAGAT GGTACCACAGAGCTAACAGATTTTGTTGATGTTACCATTAAGGAAGAGACAGATAGCCAG ATTAATAACATT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGACTGCGTCAGTAGGACGCGCGCCGTGGGAAGCCTGACGATCCTCATGGCTGCGGGT TGCTCAGAGGCTTCACGGCCAAAGGCGGCCTCGGAAGGGCCGGGGGTGGGACCGGCCGGT GTCTTGCCTTGCCTAGAGCTGCCGACCTATGCGGCCGCTTGTGCGCTGGTGAGCAGCCGC TACTCCTGCCTCGTGGCGGGGCCGCACCGGAGACACATCGCATTGTCGCCGCGCTACCTT AACAGGAAACGCACCGGTATCCGAGAACAGCTGGATGCAGAACTCCTGCGTTATTCCGAG AGCCTTTTAGGTGTACCCATTGCCTATGATAACATCAAAGTAGTGGGTGAACTAGGAGAT ATTTATGATGATCAAGGACACATTCATCTTAACATTGAAGCAGATTTTGTTATTTTCTGC CCTGAACCAGGGCAAAAGCTTATGGGTACAATTAATAAAGTGTCTTCCAGCCATATTGGC TGTTTAGTACATGGGTGCTTCAATGCCTCCATTCCTAAACCCGAGCAGATGCCAGCTGAG CAGTGGCAGACTCTGGAGATAAATGTGGGTGATGAACTAGAATTTGAAGTATTTCGCTTA GACTCAGACGCTGCTGGAGTATTCTGCATTCGTGGGAAAGTAAATGTTTCTAGTTTACAA ACCAAATGCCCTGCTATTCCTGAAGTAACAGAAACTGCCACCGAAGAAGCGGCTGTTGAG AAACCTCCAAAGAAGAAAAAGAAAAAGAAGAAAGACCCAGAGCCATGTGAAGCAGAAGAT GGTACCACAGAGCTAACAGATTTTGTTGATGTTACCATTAAGGAAGAGACAGATAGCCAG ATTAATAACATT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 42-161, + strand, RNAz p=0.932061 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 42-161, + strand, RNAz p=0.932061 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 3-302, gnl|bosTau2|chr4 (10010144-10010429) | |
| 3-302, gnl|Hg17|chr7 (19521922-19521626) | |
| 3-302, gnl|Mm7|chr12 (31272959-31273257) | |
| 444-653, gnl|bosTau2|chr4 (10018551-10018760) | |
| 444-653, gnl|canFam2|chr14 (36799677-36799939) | |
| 444-653, gnl|canFam2|chr14 (36799704-36799895) | |
| 444-653, gnl|danRer3|chr15 (28403225-28403466) | |
| 444-653, gnl|dasNov1|scaffold_42086 (4905-4651) | |
| 444-653, gnl|dasNov1|scaffold_65938 (4784-4979) | |
| 444-653, gnl|echTel1|scaffold_310110 (164200-164394) | |
| 444-653, gnl|echTel1|scaffold_323386 (13207-13464) | |
| 444-653, gnl|fr1|chrUn (35753594-35753833) | |
| 444-653, gnl|galGal2|chr2 (29048695-29048933) | |
| 444-653, gnl|hg17|chr6 (87940192-87940383) | |
| 444-653, gnl|hg17|chr7 (19512922-19513182) | |
| 444-653, gnl|Hg17|chr7 (19513144-19512935) | |
| 444-653, gnl|loxAfr1|scaffold_62174 (11375-11116) | |
| 444-653, gnl|loxAfr1|scaffold_62174 (11348-11154) | |
| 444-653, gnl|mm7|chr12 (31280508-31280248) | |
| 444-653, gnl|Mm7|chr12 (31280284-31280493) | |
| 444-653, gnl|mm7|chr16 (48510525-48510719) | |
| 444-653, gnl|monDom2|scaffold_57 (7206736-7206485) | |
| 444-653, gnl|oryCun1|scaffold_210015 (80705-80955) | |
| 444-653, gnl|oryCun1|scaffold_210015 (80729-80923) | |
| 444-653, gnl|panTro1|chr5 (89643495-89643686) | |
| 444-653, gnl|panTro1|chr6_random (23720650-23720906) | |
| 444-653, gnl|rheMac2|chr3 (106447041-106446785) | |
| 444-653, gnl|rheMac2|chr4 (83136344-83136533) | |
| 444-653, gnl|rn3|chr6 (51806815-51806556) | |
| 444-653, gnl|rn3|chr6 (51806789-51806595) | |
| 444-653, gnl|tetNig1|chr21_random (1516920-1517155) | |
| 444-653, gnl|xenTro1|scaffold_23 (1267502-1267253) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-302, gnl|bosTau2|chr4 (10010144-10010429) | |
| 3-302, gnl|Hg17|chr7 (19521922-19521626) | |
| 3-302, gnl|Mm7|chr12 (31272959-31273257) | |
| 444-653, gnl|bosTau2|chr4 (10018551-10018760) | |
| 444-653, gnl|canFam2|chr14 (36799677-36799939) | |
| 444-653, gnl|canFam2|chr14 (36799704-36799895) | |
| 444-653, gnl|danRer3|chr15 (28403225-28403466) | |
| 444-653, gnl|dasNov1|scaffold_42086 (4905-4651) | |
| 444-653, gnl|dasNov1|scaffold_65938 (4784-4979) | |
| 444-653, gnl|echTel1|scaffold_310110 (164200-164394) | |
| 444-653, gnl|echTel1|scaffold_323386 (13207-13464) | |
| 444-653, gnl|fr1|chrUn (35753594-35753833) | |
| 444-653, gnl|galGal2|chr2 (29048695-29048933) | |
| 444-653, gnl|hg17|chr6 (87940192-87940383) | |
| 444-653, gnl|hg17|chr7 (19512922-19513182) | |
| 444-653, gnl|Hg17|chr7 (19513144-19512935) | |
| 444-653, gnl|loxAfr1|scaffold_62174 (11375-11116) | |
| 444-653, gnl|loxAfr1|scaffold_62174 (11348-11154) | |
| 444-653, gnl|mm7|chr12 (31280508-31280248) | |
| 444-653, gnl|Mm7|chr12 (31280284-31280493) | |
| 444-653, gnl|mm7|chr16 (48510525-48510719) | |
| 444-653, gnl|monDom2|scaffold_57 (7206736-7206485) | |
| 444-653, gnl|oryCun1|scaffold_210015 (80705-80955) | |
| 444-653, gnl|oryCun1|scaffold_210015 (80729-80923) | |
| 444-653, gnl|panTro1|chr5 (89643495-89643686) | |
| 444-653, gnl|panTro1|chr6_random (23720650-23720906) | |
| 444-653, gnl|rheMac2|chr3 (106447041-106446785) | |
| 444-653, gnl|rheMac2|chr4 (83136344-83136533) | |
| 444-653, gnl|rn3|chr6 (51806815-51806556) | |
| 444-653, gnl|rn3|chr6 (51806789-51806595) | |
| 444-653, gnl|tetNig1|chr21_random (1516920-1517155) | |
| 444-653, gnl|xenTro1|scaffold_23 (1267502-1267253) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| ecc (0.115035) |