Ss1.1-Utr1-UTR010049E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTTCGGTCCCGGCGGCGGCAGCG CTGACCAGAGGCGCCTACCTTGCGATCTCCGCGCCTCCGCTCCGCTCTCCGGCCGCTGTG CTGCTCGCCCCGCCACCATGACGGAACAGGCCATCTCCTTCGCCAAGGACTTTCTGGCCG GAGGCATTGCCGCCGCCATCTCCAAGACGGCCGTGGCCCCCATTGAGCGGGTCAAGCTGC TGTTACAGGTGCAGCACGCCAGCAAGCAGATCGCGGCCGACAAGCAGTACAAGGGCATCG TGGACTGCATCGTGCGCATCCCCAAGGAGCAGGGCGTGCTGTCCTTCTGGAGGGGCAACC TGGCCAATGTCATCCGCTACTTCCCCACGCAAGCCCTCAACTTCGCCTTCAAGGATAAGT ACAAGCAGATTTTCCTGGGCGGCGTGGACAAGCACACGCAGTTCTGGAGGTATTTCGCCG GCAACCTGGCCTCCGGCGGCGCGGCCGGCGCCACCTCCCTCTGCTTCGTCTACCCCCTGG ATTTCGCCCGAACCCGCCTGGCTGCCGACGTGGGGAAATCCGCCACCGAGCGGGAGTTCA AAGGCCTGGGCGACTGTCTGGTGAAGATCACCAAGTCTGACGGCATCCGGGGGCTGTACC AGGGCTTCAACGTGTCGGTGCAGGGAATCATCATCTACCGGGCGGCCTACTTCGGCGTGT ACGACACGGCCAAGGGCATGCTCCCCGACCCCAGGAACACGCACATCGTGGTGAGCTGGA TGATCGCGCAGACCGTGACGGCCGTGGCGGGCGTGGTCTCCTACCCCTTCGACACCGTGC GGCGGCGGATGATGATGCAGTCCGGGCGCAAGGGAGCCGACATCATGTACAAGGGCACCC TGGACTGCTGGCGGAAGATCTTCAAGGACGAGGGCGGCAAGGCCTTCTTCAAGGGCGCCT GGTCCAACGTGCTGCGAGGCATGGGCGGCGCCTTCGTGCTGGTCCTGTACGACGAGCTGA AGAAGGTCATCTAGGCCCCGCCCCGCCCGGCGGGCACGCGGACCAAGGGACCCAGGGACC TACGTAGAATCATTCTCCACTGTCACGGACCATTGACCTTCAGAAATTCCAGTGTCCCTG CGGACGGCCCAGGCCTGGCAGAGGGCGCGGCCCCCTGGGGCCGCTACCCATCGATCGATT GCGGGGGGAGGGAATGATGGCGTCCTGGGTCCGCAGGGGAGGCAGCTCCACGAAGGCAGA CCTAGACCCCAGGTGCTTGTAGGACCGACCTGTGTTTAAGTATTTATTTAAAAATCATGT CTCCCTTTGTACTTAAGCACTGTTCTCTTTTGCACAGCCGAATATTTGCGATTGTGTTCT ATGTCGGGCATTCTGTTGCAAAACAATAAAATCAGGACACAGACAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTTTTCGGTCCCGGCGGCGGCAGCG CTGACCAGAGGCGCCTACCTTGCGATCTCCGCGCCTCCGCTCCGCTCTCCGGCCGCTGTG CTGCTCGCCCCGCCACCATGACGGAACAGGCCATCTCCTTCGCCAAGGACTTTCTGGCCG GAGGCATTGCCGCCGCCATCTCCAAGACGGCCGTGGCCCCCATTGAGCGGGTCAAGCTGC TGTTACAGGTGCAGCACGCCAGCAAGCAGATCGCGGCCGACAAGCAGTACAAGGGCATCG TGGACTGCATCGTGCGCATCCCCAAGGAGCAGGGCGTGCTGTCCTTCTGGAGGGGCAACC TGGCCAATGTCATCCGCTACTTCCCCACGCAAGCCCTCAACTTCGCCTTCAAGGATAAGT ACAAGCAGATTTTCCTGGGCGGCGTGGACAAGCACACGCAGTTCTGGAGGTATTTCGCCG GCAACCTGGCCTCCGGCGGCGCGGCCGGCGCCACCTCCCTCTGCTTCGTCTACCCCCTGG ATTTCGCCCGAACCCGCCTGGCTGCCGACGTGGGGAAATCCGCCACCGAGCGGGAGTTCA AAGGCCTGGGCGACTGTCTGGTGAAGATCACCAAGTCTGACGGCATCCGGGGGCTGTACC AGGGCTTCAACGTGTCGGTGCAGGGAATCATCATCTACCGGGCGGCCTACTTCGGCGTGT ACGACACGGCCAAGGGCATGCTCCCCGACCCCAGGAACACGCACATCGTGGTGAGCTGGA TGATCGCGCAGACCGTGACGGCCGTGGCGGGCGTGGTCTCCTACCCCTTCGACACCGTGC GGCGGCGGATGATGATGCAGTCCGGGCGCAAGGGAGCCGACATCATGTACAAGGGCACCC TGGACTGCTGGCGGAAGATCTTCAAGGACGAGGGCGGCAAGGCCTTCTTCAAGGGCGCCT GGTCCAACGTGCTGCGAGGCATGGGCGGCGCCTTCGTGCTGGTCCTGTACGACGAGCTGA AGAAGGTCATCTAGGCCCCGCCCCGCCCGGCGGGCACGCGGACCAAGGGACCCAGGGACC TACGTAGAATCATTCTCCACTGTCACGGACCATTGACCTTCAGAAATTCCAGTGTCCCTG CGGACGGCCCAGGCCTGGCAGAGGGCGCGGCCCCCTGGGGCCGCTACCCATCGATCGATT GCGGGGGGAGGGAATGATGGCGTCCTGGGTCCGCAGGGGAGGCAGCTCCACGAAGGCAGA CCTAGACCCCAGGTGCTTGTAGGACCGACCTGTGTTTAAGTATTTATTTAAAAATCATGT CTCCCTTTGTACTTAAGCACTGTTCTCTTTTGCACAGCCGAATATTTGCGATTGTGTTCT ATGTCGGGCATTCTGTTGCAAAACAATAAAATCAGGACACAGACAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 150-334, gnl|bosTau2|chr17 (18482457-18482641) | |
| 150-334, gnl|Hg17|chr4 (129009354-129009538) | |
| 150-334, gnl|Mm7|chr3 (40475694-40475878) | |
| 711-874, gnl|bosTau2|chr27 (9687504-9687341) | |
| 711-874, gnl|Hg17|chr4 (186442037-186442200) | |
| 711-874, gnl|Mm7|chr8 (44986431-44986269) | |
| 875-1033, gnl|bosTau2|chr27 (9686462-9686304) | |
| 875-1033, gnl|canFam2|chr16 (48415473-48415288) | |
| 875-1033, gnl|danRer3|chr14 (54591620-54591450) | |
| 875-1033, gnl|dasNov1|scaffold_48907 (41262-41447) | |
| 875-1033, gnl|echTel1|scaffold_104674 (1624-1798) | |
| 875-1033, gnl|fr1|chrUn (86526407-86526584) | |
| 875-1033, gnl|galGal2|chr4 (39970483-39970298) | |
| 875-1033, gnl|hg17|chr4 (186443105-186443290) | |
| 875-1033, gnl|Hg17|chr4 (186443115-186443273) | |
| 875-1033, gnl|loxAfr1|scaffold_99539 (653-838) | |
| 875-1033, gnl|mm7|chr8 (44985503-44985327) | |
| 875-1033, gnl|Mm7|chr8 (44985491-44985333) | |
| 875-1033, gnl|monDom2|scaffold_9 (67331696-67331883) | |
| 875-1033, gnl|oryCun1|scaffold_210403 (128522-128337) | |
| 875-1033, gnl|panTro1|chr3 (204652145-204652330) | |
| 875-1033, gnl|rheMac2|chr5 (177240392-177240577) | |
| 875-1033, gnl|rn3|chr16 (49356893-49357069) | |
| 875-1033, gnl|tetNig1|chr18 (5562084-5561922) | |
| 875-1033, gnl|xenTro1|scaffold_99 (2039955-2040129) | |
| 1080-1423, gnl|bosTau2|chrX (47938043-47937675) | |
| 1080-1423, gnl|canFam2|chr11 (22291756-22292087) | |
| 1080-1423, gnl|dasNov1|scaffold_258662 (390-734) | |
| 1080-1423, gnl|hg17|chr12 (3134024-3134363) | |
| 1080-1423, gnl|Hg17|chrX (1549274-1548876) | |
| 1080-1423, gnl|loxAfr1|scaffold_47065 (3913-4230) | |
| 1080-1423, gnl|mm7|chr6 (128097177-128096834) | |
| 1080-1423, gnl|monDom2|scaffold_35 (18823121-18822790) | |
| 1080-1423, gnl|oryCun1|scaffold_198861 (102663-102362) | |
| 1080-1423, gnl|panTro1|chr10 (3218396-3218735) | |
| 1080-1423, gnl|rheMac2|chr11 (3280497-3280835) | |
| 1080-1423, gnl|rn3|chr4 (164774665-164774326) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 150-334, gnl|bosTau2|chr17 (18482457-18482641) | |
| 150-334, gnl|Hg17|chr4 (129009354-129009538) | |
| 150-334, gnl|Mm7|chr3 (40475694-40475878) | |
| 711-874, gnl|bosTau2|chr27 (9687504-9687341) | |
| 711-874, gnl|Hg17|chr4 (186442037-186442200) | |
| 711-874, gnl|Mm7|chr8 (44986431-44986269) | |
| 875-1033, gnl|bosTau2|chr27 (9686462-9686304) | |
| 875-1033, gnl|canFam2|chr16 (48415473-48415288) | |
| 875-1033, gnl|danRer3|chr14 (54591620-54591450) | |
| 875-1033, gnl|dasNov1|scaffold_48907 (41262-41447) | |
| 875-1033, gnl|echTel1|scaffold_104674 (1624-1798) | |
| 875-1033, gnl|fr1|chrUn (86526407-86526584) | |
| 875-1033, gnl|galGal2|chr4 (39970483-39970298) | |
| 875-1033, gnl|hg17|chr4 (186443105-186443290) | |
| 875-1033, gnl|Hg17|chr4 (186443115-186443273) | |
| 875-1033, gnl|loxAfr1|scaffold_99539 (653-838) | |
| 875-1033, gnl|mm7|chr8 (44985503-44985327) | |
| 875-1033, gnl|Mm7|chr8 (44985491-44985333) | |
| 875-1033, gnl|monDom2|scaffold_9 (67331696-67331883) | |
| 875-1033, gnl|oryCun1|scaffold_210403 (128522-128337) | |
| 875-1033, gnl|panTro1|chr3 (204652145-204652330) | |
| 875-1033, gnl|rheMac2|chr5 (177240392-177240577) | |
| 875-1033, gnl|rn3|chr16 (49356893-49357069) | |
| 875-1033, gnl|tetNig1|chr18 (5562084-5561922) | |
| 875-1033, gnl|xenTro1|scaffold_99 (2039955-2040129) | |
| 1080-1423, gnl|bosTau2|chrX (47938043-47937675) | |
| 1080-1423, gnl|canFam2|chr11 (22291756-22292087) | |
| 1080-1423, gnl|dasNov1|scaffold_258662 (390-734) | |
| 1080-1423, gnl|hg17|chr12 (3134024-3134363) | |
| 1080-1423, gnl|Hg17|chrX (1549274-1548876) | |
| 1080-1423, gnl|loxAfr1|scaffold_47065 (3913-4230) | |
| 1080-1423, gnl|mm7|chr6 (128097177-128096834) | |
| 1080-1423, gnl|monDom2|scaffold_35 (18823121-18822790) | |
| 1080-1423, gnl|oryCun1|scaffold_198861 (102663-102362) | |
| 1080-1423, gnl|panTro1|chr10 (3218396-3218735) | |
| 1080-1423, gnl|rheMac2|chr11 (3280497-3280835) | |
| 1080-1423, gnl|rn3|chr4 (164774665-164774326) |
| Expressed library(ies): 62 entry(ies) | More info |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
| nco (3.55814) | |
| eep (3.18667) | |
| ece (2.98097) | |
| pty (2.85429) | |
| ebs (2.83923) | |
| cty (2.49792) | |
| ecc (2.3007) | |
| mcp (2.21843) | |
| fce (2.17273) | |
| eru (2.16086) | |
| ese (2.15054) | |
| nmm (2.12483) | |
| fty (2.11008) | |
| clu (2.03398) | |
| nje (1.99104) | |
| eje (1.97668) | |
| med (1.97628) | |
| jej (1.68167) | |
| eye (1.53453) | |
| fli (1.42017) | |
| col (1.36505) | |
| fhi (1.35662) | |
| cov (1.32153) | |
| nca (1.23186) | |
| nlu (1.15009) | |
| cga (1.11638) | |
| lnt (0.996158) | |
| csp (0.967118) | |
| jca (0.911681) | |
| ill (0.877963) | |
| duo (0.864006) | |
| amn (0.835422) | |
| fcc (0.791139) | |
| nep (0.7357) | |
| nms (0.641574) | |
| hlv (0.557025) | |
| fbs (0.526039) | |
| cki (0.495704) | |
| eli (0.455443) | |
| cag (0.453583) | |
| ute (0.398353) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| pgl (0.35545) | |
| cli (0.305623) | |
| sme (0.305437) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| che (0.272628) | |
| cbr (0.255951) | |
| cly (0.241284) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fco (0.157208) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| ldo (0.0970026) |
| Expressed library(ies): 62 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (3.55814) | |
| eep (3.18667) | |
| ece (2.98097) | |
| pty (2.85429) | |
| ebs (2.83923) | |
| cty (2.49792) | |
| ecc (2.3007) | |
| mcp (2.21843) | |
| fce (2.17273) | |
| eru (2.16086) | |
| ese (2.15054) | |
| nmm (2.12483) | |
| fty (2.11008) | |
| clu (2.03398) | |
| nje (1.99104) | |
| eje (1.97668) | |
| med (1.97628) | |
| jej (1.68167) | |
| eye (1.53453) | |
| fli (1.42017) | |
| col (1.36505) | |
| fhi (1.35662) | |
| cov (1.32153) | |
| nca (1.23186) | |
| nlu (1.15009) | |
| cga (1.11638) | |
| lnt (0.996158) | |
| csp (0.967118) | |
| jca (0.911681) | |
| ill (0.877963) | |
| duo (0.864006) | |
| amn (0.835422) | |
| fcc (0.791139) | |
| nep (0.7357) | |
| nms (0.641574) | |
| hlv (0.557025) | |
| fbs (0.526039) | |
| cki (0.495704) | |
| eli (0.455443) | |
| cag (0.453583) | |
| ute (0.398353) | |
| nbm (0.397298) | |
| elu (0.385356) | |
| pgl (0.35545) | |
| cli (0.305623) | |
| sme (0.305437) | |
| hyp (0.285673) | |
| cst (0.280073) | |
| che (0.272628) | |
| cbr (0.255951) | |
| cly (0.241284) | |
| tes (0.207814) | |
| sto (0.179824) | |
| ton (0.1755) | |
| rec (0.17307) | |
| fco (0.157208) | |
| ste (0.135208) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| ret (0.128733) | |
| cbl (0.114797) | |
| ldo (0.0970026) |