Non-Coding RNA Search

Ss1.1-Utr1-UTR010049F03.5

Sequence:


               
               CAAAAAACGCAGAAAAGCTCCAAGTGAAGATTGCTGATCTTGGAAATGCCTGTTGGGTGC
ACAAACATTTCACTGAAGATATTCAAACAAGGCAGTATCGCTCCTTGGAAGTACTGATAG
GATCTGGTTATAATACCCCTGCTGACATTTGGAGCACAGCATGCATGGCCTTTGAACTGG
CCACAGGCGACTATTTATTTGAACCTCATTCAGGGGAAGAGTACACTCGAGATGAAGATC
ACATTGCATTGATCATAGAACTTCTGGGGAAGGTGCCTCGCAAGCTCATTGTGGCAGGAA
AATATTCCAAGGAATTTTTCACCAAAAAAGGTGACCTGAAACATATCACGAAGCTGAAAC
CTTGGGGCCTTTTTGAGGTTCTAGTGGAGAAGTATGAGTGGTCTCAGGAAGAGGCAGCTG
GTTTCACAGATTTCTTATTGCCCATGTTGGAGCTGATCCCCGAGAAGAGAGCCACTGCCG
CCGACTGTCTCCGGCACCCTTGGCTCAACTCGTAAGCCCCAGCCCAGCACTGCAGCAGAG
ACCACATGCTGGCCCTCCGCCCCCTCCCTTTCAAGCATTTCCCTCTTCTATTTCAGGATG
AAGCTCTTCTTTCAAGGGTTTCTAGGGTTTGTTTTGTTTTTTTGTTTTTTAATCCAACAT
GTTCATTTGGGTTTGCTTACTTGACCCTGTGGAGATCCCACCACGGCTATTGGGCATCCA
AGGTGAATTTGGCCTTGATTGGGCTCTGCCAAAGACTTAACGGACTAAAACGTGAAACAG
CCTCTTGCCCTGTACCTTTTTCTTTCCATTAGGACATCGTTTAAATTATAAGCATCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAAAACGCAGAAAAGCTCCAAGTGAAGATTGCTGATCTTGGAAATGCCTGTTGGGTGC
ACAAACATTTCACTGAAGATATTCAAACAAGGCAGTATCGCTCCTTGGAAGTACTGATAG
GATCTGGTTATAATACCCCTGCTGACATTTGGAGCACAGCATGCATGGCCTTTGAACTGG
CCACAGGCGACTATTTATTTGAACCTCATTCAGGGGAAGAGTACACTCGAGATGAAGATC
ACATTGCATTGATCATAGAACTTCTGGGGAAGGTGCCTCGCAAGCTCATTGTGGCAGGAA
AATATTCCAAGGAATTTTTCACCAAAAAAGGTGACCTGAAACATATCACGAAGCTGAAAC
CTTGGGGCCTTTTTGAGGTTCTAGTGGAGAAGTATGAGTGGTCTCAGGAAGAGGCAGCTG
GTTTCACAGATTTCTTATTGCCCATGTTGGAGCTGATCCCCGAGAAGAGAGCCACTGCCG
CCGACTGTCTCCGGCACCCTTGGCTCAACTCGTAAGCCCCAGCCCAGCACTGCAGCAGAG
ACCACATGCTGGCCCTCCGCCCCCTCCCTTTCAAGCATTTCCCTCTTCTATTTCAGGATG
AAGCTCTTCTTTCAAGGGTTTCTAGGGTTTGTTTTGTTTTTTTGTTTTTTAATCCAACAT
GTTCATTTGGGTTTGCTTACTTGACCCTGTGGAGATCCCACCACGGCTATTGGGCATCCA
AGGTGAATTTGGCCTTGATTGGGCTCTGCCAAAGACTTAACGGACTAAAACGTGAAACAG
CCTCTTGCCCTGTACCTTTTTCTTTCCATTAGGACATCGTTTAAATTATAAGCATCCTTT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8CBI1_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8CBI1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               408-764, - strand, RNAz p=0.993603

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               408-764, - strand, RNAz p=0.993603

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               657-735, + strand, RNAmicro p=0.999928

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               657-735, + strand, RNAmicro p=0.999928

Aligned organism(s): 22 entry(ies)

More info

Aligned organism(s): 22 entry(ies)

Help | Less info


               
               59-168, gnl|bosTau2|chr23 (7107270-7107379)
               

               
               59-168, gnl|canFam2|chr12 (7954223-7954350)
               

               
               59-168, gnl|danRer3|chr8 (16025331-16025208)
               

               
               59-168, gnl|dasNov1|scaffold_212446 (286-413)
               

               
               59-168, gnl|echTel1|scaffold_195958 (747-620)
               

               
               59-168, gnl|fr1|chrUn (41795875-41795746)
               

               
               59-168, gnl|galGal2|chr32 (948973-948849)
               

               
               59-168, gnl|hg17|chr6 (35933013-35933137)
               

               
               59-168, gnl|Hg17|chr6 (35933124-35933015)
               

               
               59-168, gnl|loxAfr1|scaffold_100123 (7367-7494)
               

               
               59-168, gnl|mm7|chr17 (26780627-26780751)
               

               
               59-168, gnl|Mm7|chr17 (26780738-26780629)
               

               
               59-168, gnl|monDom2|scaffold_42 (11093443-11093318)
               

               
               59-168, gnl|oryCun1|scaffold_205173 (42085-41961)
               

               
               59-168, gnl|panTro1|chr5 (36388322-36388446)
               

               
               59-168, gnl|rheMac2|chr4 (35609613-35609737)
               

               
               59-168, gnl|rn3|chr20 (6834005-6834129)
               

               
               59-168, gnl|tetNig1|chr9 (3175956-3176085)
               

               
               59-168, gnl|xenTro1|scaffold_19 (298219-298340)
               


               
               329-840, gnl|bosTau2|chr23 (7116734-7117238)
               

               
               329-840, gnl|Hg17|chr6 (35911245-35910746)
               

               
               329-840, gnl|Mm7|chr17 (26776703-26776233)

Aligned organism(s): 22 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               59-168, gnl|bosTau2|chr23 (7107270-7107379)
               

               
               59-168, gnl|canFam2|chr12 (7954223-7954350)
               

               
               59-168, gnl|danRer3|chr8 (16025331-16025208)
               

               
               59-168, gnl|dasNov1|scaffold_212446 (286-413)
               

               
               59-168, gnl|echTel1|scaffold_195958 (747-620)
               

               
               59-168, gnl|fr1|chrUn (41795875-41795746)
               

               
               59-168, gnl|galGal2|chr32 (948973-948849)
               

               
               59-168, gnl|hg17|chr6 (35933013-35933137)
               

               
               59-168, gnl|Hg17|chr6 (35933124-35933015)
               

               
               59-168, gnl|loxAfr1|scaffold_100123 (7367-7494)
               

               
               59-168, gnl|mm7|chr17 (26780627-26780751)
               

               
               59-168, gnl|Mm7|chr17 (26780738-26780629)
               

               
               59-168, gnl|monDom2|scaffold_42 (11093443-11093318)
               

               
               59-168, gnl|oryCun1|scaffold_205173 (42085-41961)
               

               
               59-168, gnl|panTro1|chr5 (36388322-36388446)
               

               
               59-168, gnl|rheMac2|chr4 (35609613-35609737)
               

               
               59-168, gnl|rn3|chr20 (6834005-6834129)
               

               
               59-168, gnl|tetNig1|chr9 (3175956-3176085)
               

               
               59-168, gnl|xenTro1|scaffold_19 (298219-298340)
               


               
               329-840, gnl|bosTau2|chr23 (7116734-7117238)
               

               
               329-840, gnl|Hg17|chr6 (35911245-35910746)
               

               
               329-840, gnl|Mm7|chr17 (26776703-26776233)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               tes (0.623441)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.623441)

	59-168, gnl\|bosTau2\|chr23 (7107270-7107379)
	59-168, gnl\|canFam2\|chr12 (7954223-7954350)
	59-168, gnl\|danRer3\|chr8 (16025331-16025208)
	59-168, gnl\|dasNov1\|scaffold_212446 (286-413)
	59-168, gnl\|echTel1\|scaffold_195958 (747-620)
	59-168, gnl\|fr1\|chrUn (41795875-41795746)
	59-168, gnl\|galGal2\|chr32 (948973-948849)
	59-168, gnl\|hg17\|chr6 (35933013-35933137)
	59-168, gnl\|Hg17\|chr6 (35933124-35933015)
	59-168, gnl\|loxAfr1\|scaffold_100123 (7367-7494)
	59-168, gnl\|mm7\|chr17 (26780627-26780751)
	59-168, gnl\|Mm7\|chr17 (26780738-26780629)
	59-168, gnl\|monDom2\|scaffold_42 (11093443-11093318)
	59-168, gnl\|oryCun1\|scaffold_205173 (42085-41961)
	59-168, gnl\|panTro1\|chr5 (36388322-36388446)
	59-168, gnl\|rheMac2\|chr4 (35609613-35609737)
	59-168, gnl\|rn3\|chr20 (6834005-6834129)
	59-168, gnl\|tetNig1\|chr9 (3175956-3176085)
	59-168, gnl\|xenTro1\|scaffold_19 (298219-298340)

	329-840, gnl\|bosTau2\|chr23 (7116734-7117238)
	329-840, gnl\|Hg17\|chr6 (35911245-35910746)
	329-840, gnl\|Mm7\|chr17 (26776703-26776233)