Non-Coding RNA Search

Ss1.1-Utr1-UTR010049G06.5

Sequence:


               
               AGAACCCTCCAGAGTGTGGGTCAGCTGAAGCAGGCTGGTCCCACTGGCTGGGGGCTTCTC
CCAAGCACTCTAGTGTAGCGCTGCAGGACTTCCACATGTTGAGGGAGAGAGGGTGCATGA
TGAGCATGGTTTCAGTTGTAGCTCCATAGGTTCAGAGTCTCCAGAGCCCATCTTTCTGGT
TTCAGCGGCCCTTTCAGAGGTTGGGGAAATGCCCTTATAGGCTCCACGTGGGCGTGGGAA
CTGGGGGTTGACAGGACGCAGGCGTGAGCAAGGTGTGTTAGAAGATCCAATTCCTACTCA
GCTGAGCCCTTGGCTGGTCTTCCTTACCGTCAGGGTGACATTGGGTCTTCACCATGCTGG
CACCCAGATAACCCTCCCAGAGCCCAGGGCCTGAGCCTTGTGGCTTGTCTTGCCAGATAC
AGCGCGGGGCAGGGCGGGGCAAAAAGATGAAAAGTAGTTGGGTGAGGCAGGCAGAAGCAC
ATTCCAGCCAAGGGTACAGCAGAGGACAAGGGCTGAGGTACCCTGTGTGATGACAAATGG
CCCAGCTACCTCCCAGACCTGGACCACAGGCTGCCTGGTGGAGAGGAGGGGCAGGATTGG
AAGTCTGTCAGGATCAGAACACAGAGAGCTGCAGAATATGTGCAAAGCCGGGGAATGGCC
TTTCCAGCATATTGGTGCCTACATTGGGATCAGGTGGGAAGGAGAGTGAAAGCTAAAGCT
TCAAAAAAAAGTGACCTTCTGGAGTTCCCGTCATGGCGCAGTGGATACTGAATTCGACCT
GGAACCATGAGGTTGCGGGTTCGATCCCTGGCCTTGCTCAGCGGGTTAAGGATCCAGCGT
TGCTGTGAGCTGTGGTGTAGGTCGCAGACGTGGCTCGGATCCCCCGTGGCTGTGGCGTAG
GCCAGTGGCTACGGCTCTGATTAGATCCCTAGCCTGGGAATCTTCATATGCCGTAGAGAT
TCTGTTAGGCCTTATTTCAATTTTTATTCTGTACTAATAAACAATAATAAGAGGGGTTAG
GAGGTATAATCAATACTGTCACAGCTTTGTATGAGGACAGATGGGACTAGACTGCGTGTG
ATCTATGTGTAATGTATACAAATGTCGAAGCACTATATTGTAACCTGAAACTAATAGTGT
ATCTCAACTGTACTTCTTAAAAACAAAAAAAAAAATGGAATTTAAAGATTTTACAGCTTC
AATATTTAAAATTTATTTTGGTTTCTGTGCAGAGGTACAAAACTACATTGTGATGGCATT
CACAGAAGCTCAATAAAACAGTGTATGCTAAAAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAACCCTCCAGAGTGTGGGTCAGCTGAAGCAGGCTGGTCCCACTGGCTGGGGGCTTCTC
CCAAGCACTCTAGTGTAGCGCTGCAGGACTTCCACATGTTGAGGGAGAGAGGGTGCATGA
TGAGCATGGTTTCAGTTGTAGCTCCATAGGTTCAGAGTCTCCAGAGCCCATCTTTCTGGT
TTCAGCGGCCCTTTCAGAGGTTGGGGAAATGCCCTTATAGGCTCCACGTGGGCGTGGGAA
CTGGGGGTTGACAGGACGCAGGCGTGAGCAAGGTGTGTTAGAAGATCCAATTCCTACTCA
GCTGAGCCCTTGGCTGGTCTTCCTTACCGTCAGGGTGACATTGGGTCTTCACCATGCTGG
CACCCAGATAACCCTCCCAGAGCCCAGGGCCTGAGCCTTGTGGCTTGTCTTGCCAGATAC
AGCGCGGGGCAGGGCGGGGCAAAAAGATGAAAAGTAGTTGGGTGAGGCAGGCAGAAGCAC
ATTCCAGCCAAGGGTACAGCAGAGGACAAGGGCTGAGGTACCCTGTGTGATGACAAATGG
CCCAGCTACCTCCCAGACCTGGACCACAGGCTGCCTGGTGGAGAGGAGGGGCAGGATTGG
AAGTCTGTCAGGATCAGAACACAGAGAGCTGCAGAATATGTGCAAAGCCGGGGAATGGCC
TTTCCAGCATATTGGTGCCTACATTGGGATCAGGTGGGAAGGAGAGTGAAAGCTAAAGCT
TCAAAAAAAAGTGACCTTCTGGAGTTCCCGTCATGGCGCAGTGGATACTGAATTCGACCT
GGAACCATGAGGTTGCGGGTTCGATCCCTGGCCTTGCTCAGCGGGTTAAGGATCCAGCGT
TGCTGTGAGCTGTGGTGTAGGTCGCAGACGTGGCTCGGATCCCCCGTGGCTGTGGCGTAG
GCCAGTGGCTACGGCTCTGATTAGATCCCTAGCCTGGGAATCTTCATATGCCGTAGAGAT
TCTGTTAGGCCTTATTTCAATTTTTATTCTGTACTAATAAACAATAATAAGAGGGGTTAG
GAGGTATAATCAATACTGTCACAGCTTTGTATGAGGACAGATGGGACTAGACTGCGTGTG
ATCTATGTGTAATGTATACAAATGTCGAAGCACTATATTGTAACCTGAAACTAATAGTGT
ATCTCAACTGTACTTCTTAAAAACAAAAAAAAAAATGGAATTTAAAGATTTTACAGCTTC
AATATTTAAAATTTATTTTGGTTTCTGTGCAGAGGTACAAAACTACATTGTGATGGCATT
CACAGAAGCTCAATAAAACAGTGTATGCTAAAAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               439-552, - strand, RNAz p=0.547316

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               439-552, - strand, RNAz p=0.547316

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-738, gnl|bosTau2|chr11 (34780988-34781728)
               

               
               1-738, gnl|Hg17|chr2 (85481681-85480970)
               


               
               977-1293, gnl|bosTau2|chr11 (34781755-34782088)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-738, gnl|bosTau2|chr11 (34780988-34781728)
               

               
               1-738, gnl|Hg17|chr2 (85481681-85480970)
               


               
               977-1293, gnl|bosTau2|chr11 (34781755-34782088)

Expressed library(ies): 25 entry(ies)

More info

Expressed library(ies): 25 entry(ies)

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               fat (1.17942)
               

               
               cst (0.420109)
               

               
               bla (0.373042)
               

               
               jca (0.34188)
               

               
               tbr (0.308356)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 25 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fat (1.17942)
               

               
               cst (0.420109)
               

               
               bla (0.373042)
               

               
               jca (0.34188)
               

               
               tbr (0.308356)
               

               
               ste (0.270416)
               

               
               ova (0.258264)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               ski (0.146735)
               

               
               hlv (0.139256)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-738, gnl\|bosTau2\|chr11 (34780988-34781728)
	1-738, gnl\|Hg17\|chr2 (85481681-85480970)

	977-1293, gnl\|bosTau2\|chr11 (34781755-34782088)

	fat (1.17942)
	cst (0.420109)
	bla (0.373042)
	jca (0.34188)
	tbr (0.308356)
	ste (0.270416)
	ova (0.258264)
	sug (0.254582)
	mgp (0.230681)
	nms (0.213858)
	tes (0.207814)
	hea (0.204499)
	fcc (0.197785)
	aor (0.195274)
	cmu (0.186393)
	mgm (0.180343)
	fbs (0.175346)
	rec (0.17307)
	cut (0.169924)
	cki (0.165235)
	ski (0.146735)
	hlv (0.139256)
	cly (0.120642)
	med (0.116252)
	cty (0.10408)