Non-Coding RNA Search

Ss1.1-Utr1-UTR010049H01.5

Sequence:


               
               AGTCCCTCCAGCCGCGGTGTTGTGCTGTGGGGAAGAGAGACGGATTTGTAAACCCCGGAG
CGAGGTTCTGCCTACCCGAGGCCGCTGCTGTGCGGAGACCCCGGGTGAAGTCACCGTCAC
CATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGTGATAAGAAGGAAGGAGA
GTACATTAAACTCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAAT
GACGACACATCTCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGCGTTCCAATGAA
TTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACT
GGGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCACTCAAC
GGTTTAGATATTCTTTTTATTTTTTTCTTTTCCCTTAATCCTTTTTTATTTTTAAAAAAT
AGTTCTTTTGTAATGTGGTGTTCAAAACAGAATTGAAAACTGGCACCCCATCTCTTTAAG
ACATCTGGTAATTTGAATTCTAGTGCCCATTATTCATTATTGTTTGTTTTCATTGTGCTG
ATTTTTGGTGATCAAACCTCAGCCCCCTTCATATTGCCCTCTCCTTTTTAAAAATTACAT
GTGTGCACAGAGAGGCCACCTTTTCCAGGACTGTGCATTTGCAGGCTTGTGATAAATAGG
ATCGACTGATTTGAGTGTTCAATTGACTTTCCAACTGGCCCTGAAGTTCTAGCATGTGAT
TGCTTCACTCCTGGACTATGACTTTCAGTGGGAGATGGAAGTTTTTCAGAGAACTGAACT
GTGGAAAAATGACCTTTCCTTAACTCGAAGCTACTTTTAATATCTGAGGGTCTGGACCAA
AAGAAGAAGAGTATCAAGTTGGAGTCAAAAATGACAGAGATCGTGAGAATAATGACTAAC
TCCAAAGATGGCTTCACTGAAGAGAAAGCATTTTAAGGTGAAAGAGAAACCTTGTCAGAA
GATCCCAGAAAAGTTCTAACTTTCATTAGCAGTTAAAAGTTATTCATGCAGAAGTGTATA
CAACAGAACACTGCTCTTTTTGATTTTATTTGTACTTTTTGGCCTGGGATATGGGTTTTA
AATGGACGTTGTCTGTACCAGCTTCATTAAAATAAACAAAATATTTGTAAAAACCGTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTCCCTCCAGCCGCGGTGTTGTGCTGTGGGGAAGAGAGACGGATTTGTAAACCCCGGAG
CGAGGTTCTGCCTACCCGAGGCCGCTGCTGTGCGGAGACCCCGGGTGAAGTCACCGTCAC
CATGTCTGACCAGGAGGCAAAACCTTCAACTGAGGACTTGGGTGATAAGAAGGAAGGAGA
GTACATTAAACTCAAAGTCATTGGACAGGATAGCAGTGAGATTCACTTCAAAGTGAAAAT
GACGACACATCTCAAGAAACTCAAAGAATCATACTGTCAAAGACAGGGCGTTCCAATGAA
TTCACTCAGGTTTCTCTTTGAAGGTCAGAGAATTGCTGATAATCACACTCCAAAAGAACT
GGGAATGGAGGAAGAAGATGTGATTGAAGTTTATCAGGAACAAACAGGGGGTCACTCAAC
GGTTTAGATATTCTTTTTATTTTTTTCTTTTCCCTTAATCCTTTTTTATTTTTAAAAAAT
AGTTCTTTTGTAATGTGGTGTTCAAAACAGAATTGAAAACTGGCACCCCATCTCTTTAAG
ACATCTGGTAATTTGAATTCTAGTGCCCATTATTCATTATTGTTTGTTTTCATTGTGCTG
ATTTTTGGTGATCAAACCTCAGCCCCCTTCATATTGCCCTCTCCTTTTTAAAAATTACAT
GTGTGCACAGAGAGGCCACCTTTTCCAGGACTGTGCATTTGCAGGCTTGTGATAAATAGG
ATCGACTGATTTGAGTGTTCAATTGACTTTCCAACTGGCCCTGAAGTTCTAGCATGTGAT
TGCTTCACTCCTGGACTATGACTTTCAGTGGGAGATGGAAGTTTTTCAGAGAACTGAACT
GTGGAAAAATGACCTTTCCTTAACTCGAAGCTACTTTTAATATCTGAGGGTCTGGACCAA
AAGAAGAAGAGTATCAAGTTGGAGTCAAAAATGACAGAGATCGTGAGAATAATGACTAAC
TCCAAAGATGGCTTCACTGAAGAGAAAGCATTTTAAGGTGAAAGAGAAACCTTGTCAGAA
GATCCCAGAAAAGTTCTAACTTTCATTAGCAGTTAAAAGTTATTCATGCAGAAGTGTATA
CAACAGAACACTGCTCTTTTTGATTTTATTTGTACTTTTTGGCCTGGGATATGGGTTTTA
AATGGACGTTGTCTGTACCAGCTTCATTAAAATAAACAAAATATTTGTAAAAACCGTAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57528279|ref|NP_001009672.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57528279|ref|NP_001009672.1|

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               186-345, - strand, RNAz p=0.913605
               

               
               770-928, + strand, RNAz p=0.62412

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-345, - strand, RNAz p=0.913605
               

               
               770-928, + strand, RNAz p=0.62412

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               84-1193, gnl|bosTau2|chr10 (61316821-61317901)
               

               
               84-1193, gnl|Hg17|chr1 (157100225-157101337)
               

               
               84-1193, gnl|Mm7|chr2 (170256527-170255406)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               84-1193, gnl|bosTau2|chr10 (61316821-61317901)
               

               
               84-1193, gnl|Hg17|chr1 (157100225-157101337)
               

               
               84-1193, gnl|Mm7|chr2 (170256527-170255406)

Expressed library(ies): 60 entry(ies)

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Expressed library(ies): 60 entry(ies)

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               ret (1.1586)
               

               
               ski (1.02715)
               

               
               pro (1.02407)
               

               
               hea (1.02249)
               

               
               thg (0.760746)
               

               
               lin (0.728014)
               

               
               gul (0.710353)
               

               
               spc (0.680195)
               

               
               mga (0.64082)
               

               
               mas (0.630915)
               

               
               bla (0.621736)
               

               
               tra (0.61546)
               

               
               lyg (0.532411)
               

               
               ill (0.526778)
               

               
               kid (0.518941)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               pgl (0.473934)
               

               
               fat (0.442282)
               

               
               ste (0.405625)
               

               
               nmm (0.398406)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               eje (0.296501)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

Expressed library(ies): 60 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ret (1.1586)
               

               
               ski (1.02715)
               

               
               pro (1.02407)
               

               
               hea (1.02249)
               

               
               thg (0.760746)
               

               
               lin (0.728014)
               

               
               gul (0.710353)
               

               
               spc (0.680195)
               

               
               mga (0.64082)
               

               
               mas (0.630915)
               

               
               bla (0.621736)
               

               
               tra (0.61546)
               

               
               lyg (0.532411)
               

               
               ill (0.526778)
               

               
               kid (0.518941)
               

               
               ova (0.516529)
               

               
               sug (0.509165)
               

               
               pgl (0.473934)
               

               
               fat (0.442282)
               

               
               ste (0.405625)
               

               
               nmm (0.398406)
               

               
               aor (0.390549)
               

               
               ldo (0.38801)
               

               
               sin (0.349895)
               

               
               rec (0.346141)
               

               
               cki (0.330469)
               

               
               cje (0.330469)
               

               
               fco (0.314416)
               

               
               eje (0.296501)
               

               
               liv (0.292569)
               

               
               spl (0.286369)
               

               
               hlv (0.278513)
               

               
               pla (0.267344)
               

               
               ese (0.253004)
               

               
               cbe (0.239234)
               

               
               med (0.232504)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               cty (0.20816)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mgm (0.180343)
               

               
               ton (0.1755)
               

               
               duo (0.172801)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               csp (0.161186)
               

               
               tbr (0.154178)
               

               
               ctl (0.153069)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               cst (0.140036)
               

               
               ute (0.132784)
               

               
               cbr (0.127975)
               

               
               cly (0.120642)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)
               

               
               nbm (0.0993246)

	186-345, - strand, RNAz p=0.913605
	770-928, + strand, RNAz p=0.62412

	84-1193, gnl\|bosTau2\|chr10 (61316821-61317901)
	84-1193, gnl\|Hg17\|chr1 (157100225-157101337)
	84-1193, gnl\|Mm7\|chr2 (170256527-170255406)

	ret (1.1586)
	ski (1.02715)
	pro (1.02407)
	hea (1.02249)
	thg (0.760746)
	lin (0.728014)
	gul (0.710353)
	spc (0.680195)
	mga (0.64082)
	mas (0.630915)
	bla (0.621736)
	tra (0.61546)
	lyg (0.532411)
	ill (0.526778)
	kid (0.518941)
	ova (0.516529)
	sug (0.509165)
	pgl (0.473934)
	fat (0.442282)
	ste (0.405625)
	nmm (0.398406)
	aor (0.390549)
	ldo (0.38801)
	sin (0.349895)
	rec (0.346141)
	cki (0.330469)
	cje (0.330469)
	fco (0.314416)
	eje (0.296501)
	liv (0.292569)
	spl (0.286369)
	hlv (0.278513)
	pla (0.267344)
	ese (0.253004)
	cbe (0.239234)
	med (0.232504)
	ecc (0.23007)
	jca (0.22792)
	cty (0.20816)
	nep (0.183925)
	sag (0.182715)
	mgm (0.180343)
	ton (0.1755)
	duo (0.172801)
	mcp (0.170648)
	eye (0.170503)
	csp (0.161186)
	tbr (0.154178)
	ctl (0.153069)
	cli (0.152812)
	lun (0.150489)
	isp (0.150376)
	cst (0.140036)
	ute (0.132784)
	cbr (0.127975)
	cly (0.120642)
	clu (0.119646)
	ebs (0.118301)
	cbl (0.114797)
	nbm (0.0993246)