Ss1.1-Utr1-UTR010049H03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGTGACTCAAGGTGGCGGCGCCCAGTGGTTCCATGAGCTACTTGGAGAGTAGTAGCAGC AGTAGCAGCGATGCAGAGGAGCTGGAGCGGTGCCGAGAGGCGGCAATGCCGGCCTGGGGT TTGGAGCAGCGCCCGAGAGGCCTGGAGAAGCCAAAAGCCGGTGCTGCAAATACTCAGTTG CCAACCACCCAGCCCAGCCTCAGGCACAAGGTGGATGAGCATGAACAGGACGGCAATGAG CTTCAGACCACCCCCGAATTCCGAGCCCATGTAGCCAAGAAACTGGGAGCTCTGCTGGAC AGCTCCATTACCATCTCAGAAGTAGTGAAGGAGCCAAGAAAGGCTGAGGTACGACGAGGC ACCCCAGAGGATGACGGCTTCCGCCTTTTCTTCACCTCCATCCCTGGAGCCTCTGAGAAG GAAGCTGCTCCCCAACCCCGCCGGAAACGGTTGCCTTCCAGCTCCAGCAGCGAGGATGGT GACGAGGAGTTGCAGCGGTGCCGGGAGGCGGCTGTGTCAGCCTCCGACATCCTCCAGGAG TCCGCCATCCACGGCCCTGTCAGCGTGGAGGAGAAGGCAAAGAAGAAGAAAAGGAAGTTG AAAAAGAAAGCCAAGAAGGAGGCCAGTGCCAGTGTGGCTGCTGCTGCCACAGTCACCACC ACAGGCAAGGCCGCAGTTGGGAAGCAGAGCAAGGAGTCCGCTGAGCTCAATGGAGCCCAG GTACCACTTGGGACCAAAAAGAAGAAAAGGAAGAAAAAGGCAAAGAGGGCCGGCGAGGCT GCCCCATCCCCGCCAGCAAAGAGTGCAGCAGCCACGCCTGTACACCGAGTCCTGCCTGTG GGCACGGGGCCCAACTAGCGGCGCCCCCTGGGGACAAGTCTTTCCCAAGCCCCACCTCCC TTTCCAAGTGCAAGAACTCAACTCTGTCCATGATGGGCTTGCCCAAGGGTCGGGGCCGAG AAGAAGTTGTAAGGTGAGAAACATGAGCAAGGCCTGCCCTTCTCTGCTCCCACTGGGTAC CAGAGTGTTCTGTGGCCTCAGGAAGAAGGAGGAGGACCCCAGTTTTTCAAGGCTGATGGC CAGGTGGCAGAGCTTCCACCTCCTCAGCCTGTTGTGGGAGACAATCTGAAGAAAACGAGG GAGGGGGTCCCCGAAGTGCCAAGGCCCAGGAGGAGTTTGGTGCTTCTCCCTCCAGTCACC CAGTCTTGAGAAAGGAGAGATTCCCTCCTCCCCCACCCCCCAGTTTTCCAGAATTTTCTT CCTCCACATTTGTGAATACACCATGTACAGTTGTGTCTCTGAGCCAACCAGAGTATCAAA AATAAATTGTCGAGGGACCCAAAACATAACAGAGTGATTTGGGTGCTGCCCTCCATCAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGTGACTCAAGGTGGCGGCGCCCAGTGGTTCCATGAGCTACTTGGAGAGTAGTAGCAGC AGTAGCAGCGATGCAGAGGAGCTGGAGCGGTGCCGAGAGGCGGCAATGCCGGCCTGGGGT TTGGAGCAGCGCCCGAGAGGCCTGGAGAAGCCAAAAGCCGGTGCTGCAAATACTCAGTTG CCAACCACCCAGCCCAGCCTCAGGCACAAGGTGGATGAGCATGAACAGGACGGCAATGAG CTTCAGACCACCCCCGAATTCCGAGCCCATGTAGCCAAGAAACTGGGAGCTCTGCTGGAC AGCTCCATTACCATCTCAGAAGTAGTGAAGGAGCCAAGAAAGGCTGAGGTACGACGAGGC ACCCCAGAGGATGACGGCTTCCGCCTTTTCTTCACCTCCATCCCTGGAGCCTCTGAGAAG GAAGCTGCTCCCCAACCCCGCCGGAAACGGTTGCCTTCCAGCTCCAGCAGCGAGGATGGT GACGAGGAGTTGCAGCGGTGCCGGGAGGCGGCTGTGTCAGCCTCCGACATCCTCCAGGAG TCCGCCATCCACGGCCCTGTCAGCGTGGAGGAGAAGGCAAAGAAGAAGAAAAGGAAGTTG AAAAAGAAAGCCAAGAAGGAGGCCAGTGCCAGTGTGGCTGCTGCTGCCACAGTCACCACC ACAGGCAAGGCCGCAGTTGGGAAGCAGAGCAAGGAGTCCGCTGAGCTCAATGGAGCCCAG GTACCACTTGGGACCAAAAAGAAGAAAAGGAAGAAAAAGGCAAAGAGGGCCGGCGAGGCT GCCCCATCCCCGCCAGCAAAGAGTGCAGCAGCCACGCCTGTACACCGAGTCCTGCCTGTG GGCACGGGGCCCAACTAGCGGCGCCCCCTGGGGACAAGTCTTTCCCAAGCCCCACCTCCC TTTCCAAGTGCAAGAACTCAACTCTGTCCATGATGGGCTTGCCCAAGGGTCGGGGCCGAG AAGAAGTTGTAAGGTGAGAAACATGAGCAAGGCCTGCCCTTCTCTGCTCCCACTGGGTAC CAGAGTGTTCTGTGGCCTCAGGAAGAAGGAGGAGGACCCCAGTTTTTCAAGGCTGATGGC CAGGTGGCAGAGCTTCCACCTCCTCAGCCTGTTGTGGGAGACAATCTGAAGAAAACGAGG GAGGGGGTCCCCGAAGTGCCAAGGCCCAGGAGGAGTTTGGTGCTTCTCCCTCCAGTCACC CAGTCTTGAGAAAGGAGAGATTCCCTCCTCCCCCACCCCCCAGTTTTCCAGAATTTTCTT CCTCCACATTTGTGAATACACCATGTACAGTTGTGTCTCTGAGCCAACCAGAGTATCAAA AATAAATTGTCGAGGGACCCAAAACATAACAGAGTGATTTGGGTGCTGCCCTCCATCAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 504-620, + strand, RNAz p=0.997386 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 504-620, + strand, RNAz p=0.997386 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-162, gnl|bosTau2|chr17 (36095424-36095584) | |
| 1-162, gnl|Hg17|chr12 (119917009-119916851) | |
| 1-162, gnl|Mm7|chr5 (114163029-114163190) | |
| 201-302, gnl|bosTau2|chr17 (36099373-36099474) | |
| 201-302, gnl|canFam2|chr26 (19855865-19856006) | |
| 201-302, gnl|danRer3|chrUn (142052823-142052942) | |
| 201-302, gnl|dasNov1|scaffold_9333 (46922-46833) | |
| 201-302, gnl|echTel1|scaffold_282377 (61468-61382) | |
| 201-302, gnl|fr1|chrUn (187301424-187301285) | |
| 201-302, gnl|galGal2|chr15 (9032253-9032137) | |
| 201-302, gnl|hg17|chr12 (119911325-119911466) | |
| 201-302, gnl|Hg17|chr12 (119911452-119911351) | |
| 201-302, gnl|loxAfr1|scaffold_27102 (20922-20779) | |
| 201-302, gnl|mm7|chr5 (114166954-114166836) | |
| 201-302, gnl|Mm7|chr5 (114166848-114166949) | |
| 201-302, gnl|monDom2|scaffold_145 (1406944-1406820) | |
| 201-302, gnl|oryCun1|scaffold_207174 (7378-7499) | |
| 201-302, gnl|panTro1|chr10 (122976631-122976772) | |
| 201-302, gnl|rheMac2|chr11 (122050988-122051129) | |
| 201-302, gnl|rn3|chr12 (42811465-42811584) | |
| 201-302, gnl|tetNig1|chr12 (11819785-11819674) | |
| 465-1167, gnl|bosTau2|chr17 (36104308-36105011) | |
| 465-1167, gnl|Hg17|chr12 (119905018-119904302) | |
| 465-1167, gnl|Mm7|chr5 (114168509-114169376) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-162, gnl|bosTau2|chr17 (36095424-36095584) | |
| 1-162, gnl|Hg17|chr12 (119917009-119916851) | |
| 1-162, gnl|Mm7|chr5 (114163029-114163190) | |
| 201-302, gnl|bosTau2|chr17 (36099373-36099474) | |
| 201-302, gnl|canFam2|chr26 (19855865-19856006) | |
| 201-302, gnl|danRer3|chrUn (142052823-142052942) | |
| 201-302, gnl|dasNov1|scaffold_9333 (46922-46833) | |
| 201-302, gnl|echTel1|scaffold_282377 (61468-61382) | |
| 201-302, gnl|fr1|chrUn (187301424-187301285) | |
| 201-302, gnl|galGal2|chr15 (9032253-9032137) | |
| 201-302, gnl|hg17|chr12 (119911325-119911466) | |
| 201-302, gnl|Hg17|chr12 (119911452-119911351) | |
| 201-302, gnl|loxAfr1|scaffold_27102 (20922-20779) | |
| 201-302, gnl|mm7|chr5 (114166954-114166836) | |
| 201-302, gnl|Mm7|chr5 (114166848-114166949) | |
| 201-302, gnl|monDom2|scaffold_145 (1406944-1406820) | |
| 201-302, gnl|oryCun1|scaffold_207174 (7378-7499) | |
| 201-302, gnl|panTro1|chr10 (122976631-122976772) | |
| 201-302, gnl|rheMac2|chr11 (122050988-122051129) | |
| 201-302, gnl|rn3|chr12 (42811465-42811584) | |
| 201-302, gnl|tetNig1|chr12 (11819785-11819674) | |
| 465-1167, gnl|bosTau2|chr17 (36104308-36105011) | |
| 465-1167, gnl|Hg17|chr12 (119905018-119904302) | |
| 465-1167, gnl|Mm7|chr5 (114168509-114169376) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| fce (0.543183) | |
| fcc (0.197785) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ecc (0.115035) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| fcc (0.197785) | |
| pty (0.142714) | |
| ova (0.129132) | |
| ese (0.126502) | |
| ecc (0.115035) |