Ss1.1-Utr1-UTR010050A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGCGAGCCGACATGGCGGCGGCTTTTCGGAAGGCGGCTAAATCCCGGCAGCGGGAACACC GAGAGCGAAGCCAGCCCAGCTTTCGAAAACATCTGGGCCTGCTGGAAAAAAAAAGAAAGA TTACAAACTTCGTGCAGATGACTACCGGCATAAGCAAGAATACCTCAGAGCCCTCCGGAA AAAGGCTCTTGAAAAAAATCCAGATGAATTCTACTATAAAATGACTCGGGTTAAACTCCA GGATGGAGTTCATGTTATTAAGGAGACTAAGGAAGAAGTAACTCCAGAACAACTGAAACT AATGAGAACTCAGGATGTCAAATACATAGAAATGAAAAGGGTTGCAGAAGCCAAGAAAAT CGAAAGACTAAAATCAGAGCTCCATCTGCTGGATTTCCAGGGGAAGCAACAGAATAAGCA TGTGTTCTTTTTTGACACCAAAAAGGAAGTTGAACAGTTTGATATTGCAACTCACCTGCG AACAGCCCCAGAACTAGTCGACAGAGTCTTCAACAGACCCACAATAGAGACTTTGCAGAA GCAGAAAGTGAAAGGAGTTAACCATAAGAATCGACTTAAGCGGATAGCCAAAGAGAGACA AAAGCAGTATAACTGCCTGATGCAGCGGATTGAGCGCGAGAAGAAATTATTCGTTATTGC ACAGAAAATTCAGACTCGCAAAGATCTTCTGGATAAAACTCGGAAGGTGAAGGTGAAGAA AGAAACAGTGAACTCCCCAGCCATTTATAAATTTGAAAGTCGTCGCAAACGTTGAAGGGT TATGGATAAGCCTTGTCATTCCACATGGAAAAGAGTTTGTTTCTTTTCCAGTAACTTCAA AGTCCATTGGCTTAAATTACTTGGTTTTCCTGCTTGTAGCTAATTTATTGTAGGTCTGAC ATTTGGTATGAGCCATGTTCAAGCCCTTTCCCTTGTCTAAACTGTTTGTGGGTTGTTGAA ATCAGTCTTATTTTGATGTACTTTCTTTTTCATTATGAAAGTTATATAATCTCATTATGG CAGATTCGGGAAATAAATGAGTTCATCCCTAATCCCAATACCTATTCAAGAGCAACAAAT AATTGTTGCATCCTTACAGCGCCAGGAGGTAGGGAAATGGAGGTGAATAACCACAAAGGG GGTTCTGGTTTATTTCCTTGTGTTGTAAAGGTCTGCACTGGTTTTTGTGTTTTGTAGTTG TAGTTAAACACTTTTATGGCCTGCTTTTTTCACTTACTATTAAGTCCTTAGCTCTTTTCC ATTTTGTTACATCATTAAATTTTTAAAAAGTAATATATGCTCATAGTAAACATTAAAATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGCGAGCCGACATGGCGGCGGCTTTTCGGAAGGCGGCTAAATCCCGGCAGCGGGAACACC GAGAGCGAAGCCAGCCCAGCTTTCGAAAACATCTGGGCCTGCTGGAAAAAAAAAGAAAGA TTACAAACTTCGTGCAGATGACTACCGGCATAAGCAAGAATACCTCAGAGCCCTCCGGAA AAAGGCTCTTGAAAAAAATCCAGATGAATTCTACTATAAAATGACTCGGGTTAAACTCCA GGATGGAGTTCATGTTATTAAGGAGACTAAGGAAGAAGTAACTCCAGAACAACTGAAACT AATGAGAACTCAGGATGTCAAATACATAGAAATGAAAAGGGTTGCAGAAGCCAAGAAAAT CGAAAGACTAAAATCAGAGCTCCATCTGCTGGATTTCCAGGGGAAGCAACAGAATAAGCA TGTGTTCTTTTTTGACACCAAAAAGGAAGTTGAACAGTTTGATATTGCAACTCACCTGCG AACAGCCCCAGAACTAGTCGACAGAGTCTTCAACAGACCCACAATAGAGACTTTGCAGAA GCAGAAAGTGAAAGGAGTTAACCATAAGAATCGACTTAAGCGGATAGCCAAAGAGAGACA AAAGCAGTATAACTGCCTGATGCAGCGGATTGAGCGCGAGAAGAAATTATTCGTTATTGC ACAGAAAATTCAGACTCGCAAAGATCTTCTGGATAAAACTCGGAAGGTGAAGGTGAAGAA AGAAACAGTGAACTCCCCAGCCATTTATAAATTTGAAAGTCGTCGCAAACGTTGAAGGGT TATGGATAAGCCTTGTCATTCCACATGGAAAAGAGTTTGTTTCTTTTCCAGTAACTTCAA AGTCCATTGGCTTAAATTACTTGGTTTTCCTGCTTGTAGCTAATTTATTGTAGGTCTGAC ATTTGGTATGAGCCATGTTCAAGCCCTTTCCCTTGTCTAAACTGTTTGTGGGTTGTTGAA ATCAGTCTTATTTTGATGTACTTTCTTTTTCATTATGAAAGTTATATAATCTCATTATGG CAGATTCGGGAAATAAATGAGTTCATCCCTAATCCCAATACCTATTCAAGAGCAACAAAT AATTGTTGCATCCTTACAGCGCCAGGAGGTAGGGAAATGGAGGTGAATAACCACAAAGGG GGTTCTGGTTTATTTCCTTGTGTTGTAAAGGTCTGCACTGGTTTTTGTGTTTTGTAGTTG TAGTTAAACACTTTTATGGCCTGCTTTTTTCACTTACTATTAAGTCCTTAGCTCTTTTCC ATTTTGTTACATCATTAAATTTTTAAAAAGTAATATATGCTCATAGTAAACATTAAAATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 240-355, gnl|bosTau2|chr3 (74657689-74657574) | |
| 240-355, gnl|Hg17|chr1 (38153227-38153342) | |
| 240-355, gnl|Mm7|chr4 (124127997-124127882) | |
| 448-580, gnl|bosTau2|chr3 (74656906-74656774) | |
| 448-580, gnl|canFam2|chr15 (7576469-7576324) | |
| 448-580, gnl|danRer3|chrNA (200286287-200286432) | |
| 448-580, gnl|dasNov1|scaffold_74255 (36611-36466) | |
| 448-580, gnl|echTel1|scaffold_312489 (35234-35379) | |
| 448-580, gnl|fr1|chrUn (156017665-156017807) | |
| 448-580, gnl|galGal2|chr23 (3044952-3044810) | |
| 448-580, gnl|hg17|chr1 (38153990-38154135) | |
| 448-580, gnl|Hg17|chr1 (38154016-38154148) | |
| 448-580, gnl|loxAfr1|scaffold_3622 (19836-19691) | |
| 448-580, gnl|mm7|chr4 (124127000-124126855) | |
| 448-580, gnl|Mm7|chr4 (124126972-124126840) | |
| 448-580, gnl|monDom2|scaffold_43 (11482848-11482712) | |
| 448-580, gnl|oryCun1|scaffold_181366 (33098-32953) | |
| 448-580, gnl|panTro1|chr1 (39002183-39002328) | |
| 448-580, gnl|rheMac2|chr1 (40896533-40896678) | |
| 448-580, gnl|rn3|chr5 (144017407-144017261) | |
| 448-580, gnl|tetNig1|chrUn_random (131157518-131157373) | |
| 691-975, gnl|bosTau2|chr3 (74653657-74653371) | |
| 691-975, gnl|Hg17|chr1 (38158309-38158601) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 240-355, gnl|bosTau2|chr3 (74657689-74657574) | |
| 240-355, gnl|Hg17|chr1 (38153227-38153342) | |
| 240-355, gnl|Mm7|chr4 (124127997-124127882) | |
| 448-580, gnl|bosTau2|chr3 (74656906-74656774) | |
| 448-580, gnl|canFam2|chr15 (7576469-7576324) | |
| 448-580, gnl|danRer3|chrNA (200286287-200286432) | |
| 448-580, gnl|dasNov1|scaffold_74255 (36611-36466) | |
| 448-580, gnl|echTel1|scaffold_312489 (35234-35379) | |
| 448-580, gnl|fr1|chrUn (156017665-156017807) | |
| 448-580, gnl|galGal2|chr23 (3044952-3044810) | |
| 448-580, gnl|hg17|chr1 (38153990-38154135) | |
| 448-580, gnl|Hg17|chr1 (38154016-38154148) | |
| 448-580, gnl|loxAfr1|scaffold_3622 (19836-19691) | |
| 448-580, gnl|mm7|chr4 (124127000-124126855) | |
| 448-580, gnl|Mm7|chr4 (124126972-124126840) | |
| 448-580, gnl|monDom2|scaffold_43 (11482848-11482712) | |
| 448-580, gnl|oryCun1|scaffold_181366 (33098-32953) | |
| 448-580, gnl|panTro1|chr1 (39002183-39002328) | |
| 448-580, gnl|rheMac2|chr1 (40896533-40896678) | |
| 448-580, gnl|rn3|chr5 (144017407-144017261) | |
| 448-580, gnl|tetNig1|chrUn_random (131157518-131157373) | |
| 691-975, gnl|bosTau2|chr3 (74653657-74653371) | |
| 691-975, gnl|Hg17|chr1 (38158309-38158601) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| ova (0.258264) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ldo (0.0970026) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ova (0.258264) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| bfe (0.149858) | |
| fat (0.147427) | |
| ski (0.146735) | |
| csk (0.140746) | |
| ste (0.135208) | |
| ldo (0.0970026) |