Non-Coding RNA Search

Ss1.1-Utr1-UTR010050E08.5

Sequence:


               
               GTCATCTGCTACACAAGAAGCCAAGCCCCTTTTTAATCTGTATAAAGTCGACAGTCTTGG
GATCTAGTGATTGAAGAAACTGCCTTCTCTCTGAGAGTCATCTGCTACCCCAGGTAGGGT
CCTTCAGGGCAGTAAGGCCACCATGGCTCAGAAGTCCCTGGTCCTGTTTTTGTGGCTGGC
CCTGGTGCTGCTGGTGCTGGGGTGGGTCCAGCCTTCCCTGGGCAAGGAATCACCAGCCAA
GAAGTTCCAGCGGCAGCACATGGACCCTGACAGCTCCTCCAGCAACAGCTCCAACTACTG
CAACCTAATGATGAGTCGCCGGAACATGACACAAGGACGGTGCAAGCCGGTGAACACCTT
TGTGCACGAGTCCCTGGCAGATGTCCAGGCCGTCTGCTCCCAGATCAATGTCAACTGCAA
GAATGGGCAGACCAACTGCTACCAGAGCAACTCCACCATGCACATTACAGACTGCCGCCA
GACGGGCAGCTCCAAGTACCCCAACTGTGCATACAAGGCCAGCCAGCAGGAGAAACACAT
CATCGTGGCCTGTGAGGGGAACCCACCCGTGCCAGTCCATTTCGATGCTTCTGTGTAGGT
CTCCACCAGAGAGATGCCCCACCTCATCACCAAGGCATCTGCCTCTCCCCTCTGCTTCTT
TGCCCTAGGGGGCAATAACTTAAGGTAGCCATGGCTCTTATTCATCCTCCACCTCCCACC
CCTCACACATGTGTTTACATGCTTCTTTGGCTTGAGGGCAATAGCTCAGGTCAGGTTTCT
TATCACACACACATTTCCCTGGTTGAGGGCAATAACTCAAGTTACTTAGGGCTCTTATCC
AACAAGAGCATGCGCCAATGGCTTGAGGCTTGCCCTTACTTGGTTTGGAGGGTGAGGAGT
GGGTTGTGAGGTGGGCCCATGTTAACCCCTTCACTGCTTCTTTCAATAAAACATATTTGC
AACTAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATCTGCTACACAAGAAGCCAAGCCCCTTTTTAATCTGTATAAAGTCGACAGTCTTGG
GATCTAGTGATTGAAGAAACTGCCTTCTCTCTGAGAGTCATCTGCTACCCCAGGTAGGGT
CCTTCAGGGCAGTAAGGCCACCATGGCTCAGAAGTCCCTGGTCCTGTTTTTGTGGCTGGC
CCTGGTGCTGCTGGTGCTGGGGTGGGTCCAGCCTTCCCTGGGCAAGGAATCACCAGCCAA
GAAGTTCCAGCGGCAGCACATGGACCCTGACAGCTCCTCCAGCAACAGCTCCAACTACTG
CAACCTAATGATGAGTCGCCGGAACATGACACAAGGACGGTGCAAGCCGGTGAACACCTT
TGTGCACGAGTCCCTGGCAGATGTCCAGGCCGTCTGCTCCCAGATCAATGTCAACTGCAA
GAATGGGCAGACCAACTGCTACCAGAGCAACTCCACCATGCACATTACAGACTGCCGCCA
GACGGGCAGCTCCAAGTACCCCAACTGTGCATACAAGGCCAGCCAGCAGGAGAAACACAT
CATCGTGGCCTGTGAGGGGAACCCACCCGTGCCAGTCCATTTCGATGCTTCTGTGTAGGT
CTCCACCAGAGAGATGCCCCACCTCATCACCAAGGCATCTGCCTCTCCCCTCTGCTTCTT
TGCCCTAGGGGGCAATAACTTAAGGTAGCCATGGCTCTTATTCATCCTCCACCTCCCACC
CCTCACACATGTGTTTACATGCTTCTTTGGCTTGAGGGCAATAGCTCAGGTCAGGTTTCT
TATCACACACACATTTCCCTGGTTGAGGGCAATAACTCAAGTTACTTAGGGCTCTTATCC
AACAAGAGCATGCGCCAATGGCTTGAGGCTTGCCCTTACTTGGTTTGGAGGGTGAGGAGT
GGGTTGTGAGGTGGGCCCATGTTAACCCCTTCACTGCTTCTTTCAATAAAACATATTTGC
AACTAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               RNAS1_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               RNAS1_PIG

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               156-275, - strand, RNAz p=0.90927
               

               
               316-435, - strand, RNAz p=0.576456
               

               
               662-770, - strand, RNAz p=0.510031

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               156-275, - strand, RNAz p=0.90927
               

               
               316-435, - strand, RNAz p=0.576456
               

               
               662-770, - strand, RNAz p=0.510031

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               120-808, gnl|bosTau2|chr10 (16703029-16703741)
               

               
               120-808, gnl|Hg17|chr14 (20340090-20339505)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               120-808, gnl|bosTau2|chr10 (16703029-16703741)
               

               
               120-808, gnl|Hg17|chr14 (20340090-20339505)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               ute (1.06228)
               

               
               hyp (0.571347)
               

               
               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               fbs (0.175346)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               spc (0.113366)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ute (1.06228)
               

               
               hyp (0.571347)
               

               
               fcc (0.39557)
               

               
               fhi (0.339155)
               

               
               fbs (0.175346)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               spc (0.113366)

	156-275, - strand, RNAz p=0.90927
	316-435, - strand, RNAz p=0.576456
	662-770, - strand, RNAz p=0.510031

	120-808, gnl\|bosTau2\|chr10 (16703029-16703741)
	120-808, gnl\|Hg17\|chr14 (20340090-20339505)

	ute (1.06228)
	hyp (0.571347)
	fcc (0.39557)
	fhi (0.339155)
	fbs (0.175346)
	nca (0.136874)
	pla (0.133672)
	cov (0.132153)
	spc (0.113366)