Ss1.1-Utr1-UTR010050F09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACTCTCCGGGGCTTGAAGGAAGCAGGTAACAAGACGCTGCCCACCCTCGTCCCCTCCGGA CCGCCGCTCTCTGGATCGGTGCCGCCCCGATCCCCCCACTCTGAATTTTTTTTCCTTTCT CCCAAATCTCCAAACAGGAAATAGTTTGAGTCACAATAATACACAGGAGCAGCAGCCGAG GCCACTCGCGCCCGCCCATTCCCGGGGCCGCCTCCAGCACTCTGGCCGGGCGAGGCGCCT CCGGCAACGCGCGAGGAAAGCGCAGGGGACACCGGCCCAGCAGCCGGCGCCGCGTCGGAG GCGCCCAAGCGCCTGGCAGAGCCACCCTCGCCCAGCGCCGGACTCCGCCAACTGCAGCCA CTACCCGCTTCCAGGGTTCGAAGTACCGCATTATTATCATCTCCCTGTGAGTGGGACTGG CACCCCAGCTGTACCTCCTGGCGGAAGTGCTCCACAAAACACAGACTCCTGCTAGCCGAC AGCCTGCTTTACCAGGTACTTGCAATGGAAGAACTGATATGGGAACAGTACACTGTGACC CTACAGAAGGATTCCAAGAGAGGATTTGGAATTGCAGTATCCGGAGGCAGAGACAACCCC CACTTTGAAAATGGGGAGACATCAATCGTCATTTCTGACGTGCTCCCGGGTGGGCCCGCC GATGGGCTGCTTCAAGAAAATGATCGGGTGGTCATGGTTAACGGCACCCCCATGGAGGAT GTGCTCCATTCCTTTGCCGTTCAGCAGTTGAGAAAAAGTGGGAAGATCGCTGCCATTGTA GTCAAGAGGCCCCGGAAGGTCCAGCTGGCTCCGGTGCAGGGCAGCCCTCTTATCCACGAG GATGACCGGGCTTTCGAGGTGATGGATGAGTTTGATGGCAGAAGCGCGCGCAGCGGGTAT AGCGAGAGAAGCCGGCCCAGCAGCCGCGGAGGGCGCAGCCACAGCTGGGAGGACAGCCCA GAGAGGGGCCGTCCCCACGAACGTGAACGCAGCCGGGAGCGGGACCGCAGCCGTGGCAGG AGCCTGGAGCGGGGCCTAGACCATGACGACTACGGGCGAGCTCGGGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACTCTCCGGGGCTTGAAGGAAGCAGGTAACAAGACGCTGCCCACCCTCGTCCCCTCCGGA CCGCCGCTCTCTGGATCGGTGCCGCCCCGATCCCCCCACTCTGAATTTTTTTTCCTTTCT CCCAAATCTCCAAACAGGAAATAGTTTGAGTCACAATAATACACAGGAGCAGCAGCCGAG GCCACTCGCGCCCGCCCATTCCCGGGGCCGCCTCCAGCACTCTGGCCGGGCGAGGCGCCT CCGGCAACGCGCGAGGAAAGCGCAGGGGACACCGGCCCAGCAGCCGGCGCCGCGTCGGAG GCGCCCAAGCGCCTGGCAGAGCCACCCTCGCCCAGCGCCGGACTCCGCCAACTGCAGCCA CTACCCGCTTCCAGGGTTCGAAGTACCGCATTATTATCATCTCCCTGTGAGTGGGACTGG CACCCCAGCTGTACCTCCTGGCGGAAGTGCTCCACAAAACACAGACTCCTGCTAGCCGAC AGCCTGCTTTACCAGGTACTTGCAATGGAAGAACTGATATGGGAACAGTACACTGTGACC CTACAGAAGGATTCCAAGAGAGGATTTGGAATTGCAGTATCCGGAGGCAGAGACAACCCC CACTTTGAAAATGGGGAGACATCAATCGTCATTTCTGACGTGCTCCCGGGTGGGCCCGCC GATGGGCTGCTTCAAGAAAATGATCGGGTGGTCATGGTTAACGGCACCCCCATGGAGGAT GTGCTCCATTCCTTTGCCGTTCAGCAGTTGAGAAAAAGTGGGAAGATCGCTGCCATTGTA GTCAAGAGGCCCCGGAAGGTCCAGCTGGCTCCGGTGCAGGGCAGCCCTCTTATCCACGAG GATGACCGGGCTTTCGAGGTGATGGATGAGTTTGATGGCAGAAGCGCGCGCAGCGGGTAT AGCGAGAGAAGCCGGCCCAGCAGCCGCGGAGGGCGCAGCCACAGCTGGGAGGACAGCCCA GAGAGGGGCCGTCCCCACGAACGTGAACGCAGCCGGGAGCGGGACCGCAGCCGTGGCAGG AGCCTGGAGCGGGGCCTAGACCATGACGACTACGGGCGAGCTCGGGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 40-145, - strand, RNAz p=0.742246 | |
| 548-674, + strand, RNAz p=0.960095 | |
| 857-976, + strand, RNAz p=0.700207 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 40-145, - strand, RNAz p=0.742246 | |
| 548-674, + strand, RNAz p=0.960095 | |
| 857-976, + strand, RNAz p=0.700207 |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-375, gnl|bosTau2|chr8 (19787878-19787499) | |
| 1-375, gnl|Hg17|chr9 (68965813-68966196) | |
| 548-674, gnl|bosTau2|chr8 (19696002-19695876) | |
| 548-674, gnl|canFam2|chr1 (91227924-91227763) | |
| 548-674, gnl|danRer3|chr10 (630845-630994) | |
| 548-674, gnl|dasNov1|scaffold_6386 (58673-58518) | |
| 548-674, gnl|echTel1|scaffold_181762 (650-805) | |
| 548-674, gnl|fr1|chrUn (135810839-135810687) | |
| 548-674, gnl|galGal2|chrZ (15491959-15492090) | |
| 548-674, gnl|hg17|chr9 (69060788-69060940) | |
| 548-674, gnl|Hg17|chr9 (69060807-69060933) | |
| 548-674, gnl|loxAfr1|scaffold_6085 (44973-45126) | |
| 548-674, gnl|mm7|chr19 (23833245-23833085) | |
| 548-674, gnl|Mm7|chr19 (23833216-23833090) | |
| 548-674, gnl|monDom2|scaffold_17 (20888838-20888689) | |
| 548-674, gnl|oryCun1|scaffold_126858 (13765-13917) | |
| 548-674, gnl|panTro1|chr11 (52837860-52838012) | |
| 548-674, gnl|rheMac2|chr15 (78024221-78024373) | |
| 548-674, gnl|rn3|chr1 (227678077-227677916) | |
| 548-674, gnl|tetNig1|chrUn_random (92114995-92114845) | |
| 548-674, gnl|xenTro1|scaffold_535 (517300-517450) | |
| 778-1068, gnl|bosTau2|chr8 (19693676-19693395) | |
| 778-1068, gnl|Hg17|chr9 (69065357-69065656) | |
| 778-1068, gnl|Mm7|chr19 (23829713-23829423) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-375, gnl|bosTau2|chr8 (19787878-19787499) | |
| 1-375, gnl|Hg17|chr9 (68965813-68966196) | |
| 548-674, gnl|bosTau2|chr8 (19696002-19695876) | |
| 548-674, gnl|canFam2|chr1 (91227924-91227763) | |
| 548-674, gnl|danRer3|chr10 (630845-630994) | |
| 548-674, gnl|dasNov1|scaffold_6386 (58673-58518) | |
| 548-674, gnl|echTel1|scaffold_181762 (650-805) | |
| 548-674, gnl|fr1|chrUn (135810839-135810687) | |
| 548-674, gnl|galGal2|chrZ (15491959-15492090) | |
| 548-674, gnl|hg17|chr9 (69060788-69060940) | |
| 548-674, gnl|Hg17|chr9 (69060807-69060933) | |
| 548-674, gnl|loxAfr1|scaffold_6085 (44973-45126) | |
| 548-674, gnl|mm7|chr19 (23833245-23833085) | |
| 548-674, gnl|Mm7|chr19 (23833216-23833090) | |
| 548-674, gnl|monDom2|scaffold_17 (20888838-20888689) | |
| 548-674, gnl|oryCun1|scaffold_126858 (13765-13917) | |
| 548-674, gnl|panTro1|chr11 (52837860-52838012) | |
| 548-674, gnl|rheMac2|chr15 (78024221-78024373) | |
| 548-674, gnl|rn3|chr1 (227678077-227677916) | |
| 548-674, gnl|tetNig1|chrUn_random (92114995-92114845) | |
| 548-674, gnl|xenTro1|scaffold_535 (517300-517450) | |
| 778-1068, gnl|bosTau2|chr8 (19693676-19693395) | |
| 778-1068, gnl|Hg17|chr9 (69065357-69065656) | |
| 778-1068, gnl|Mm7|chr19 (23829713-23829423) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| pty (0.142714) |