Non-Coding RNA Search

Ss1.1-Utr1-UTR010050G11.5

Sequence:


               
               AGGCTTCATCTCGCCATTCCCGAGCCTGGTCTGGCCAGTTTTGAGAGCTCAAGAGTGGGT
CAGGAGCCCCAGGCCAACTTCAGCTCAAACCCCATGTGTACCAGCAGAGAGAACCATGGG
GCAGGGCTGGGAGGAAATGACTTTGGCGATGGGCTTGGAACTTTCATTGAAACAGGAGAC
TTAAGCACTTCTAGTCACTTTAATAAGGGCTTGGGGCATGATGAACACTGGACCTCTTGT
GCTTTTTCCTGGAACAGCTGCCTCTAGTAGAAAGCTCCAGCATCTCCTCAGGCAAGGCTT
TGACAGGTGCTCAGCATCAAAATGGAAATGGCCAGGACCCCAGAGGCTTCCTAGCCTCAT
GCTTGTCCTCACAGGTGTGCCACACAGCCTGAGGACTATTCCAGGGCAAATTACCTTTGA
ATCCACCTACCTTTTTGGAAAGGATAATCAAAAATAGCTTGTTTGCCACATGGGAGAAAC
TAACCAAAGAACCCAGAGCAGTCTGGAATCTTGGTTTGAGTGCTTAGCTTTCCCACAGTA
CCGTGGAGACCTTGGCCAAGTTGATGGCCTTCTGCCAGTGTACCCACCATCATCTGCAGC
TTGAACCAACATTTTGTGAATAGCTGATGTGTTGCCTTCGAAAGACCTGGGACAGTCCAT
CTGAGGCTGGTTCTGAACCTGTCACTCAACCCAGCAGGGGACCAACTGCAGCTTAAAAAC
CACTTGGCGCTTGTGAGGCCAACTCAGAGCCACTCCTCCAAGAGAGTGGGGGCCCCTTGT
GCCACCACCACCGCAAGCAGTGACTACAGTTGTGCAAAAAAGCCTTTGCTGCATTCAGAG
GCCTGCCCTCTGAGGTCACACCCTGCCTCTGCAGCATATTTATTTTTTGTGCTGGATGGA
CTCTGGTCCTTTGTTTCTTTTCTGTGCAAGCTTGGGTTTGCTGTGCACTGTGCAGCTAGA
GAACCTCTTGGCCTATTTAATTATGGCTTGTATAAATAGCTTTCTTATTTTAAACAGGTT
CCCAACTTTACTGAGCTTTGGGGGTTGGGGTATTTTTTAAAACTGCAAATGACAATGAAA
AACAACTATTGAAGATTCCCAAGAGACTGAATTGCACTAGAGATCAACCAAAAGGAAACA
TCCTTGGAATCTCAGATCACTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGCTTCATCTCGCCATTCCCGAGCCTGGTCTGGCCAGTTTTGAGAGCTCAAGAGTGGGT
CAGGAGCCCCAGGCCAACTTCAGCTCAAACCCCATGTGTACCAGCAGAGAGAACCATGGG
GCAGGGCTGGGAGGAAATGACTTTGGCGATGGGCTTGGAACTTTCATTGAAACAGGAGAC
TTAAGCACTTCTAGTCACTTTAATAAGGGCTTGGGGCATGATGAACACTGGACCTCTTGT
GCTTTTTCCTGGAACAGCTGCCTCTAGTAGAAAGCTCCAGCATCTCCTCAGGCAAGGCTT
TGACAGGTGCTCAGCATCAAAATGGAAATGGCCAGGACCCCAGAGGCTTCCTAGCCTCAT
GCTTGTCCTCACAGGTGTGCCACACAGCCTGAGGACTATTCCAGGGCAAATTACCTTTGA
ATCCACCTACCTTTTTGGAAAGGATAATCAAAAATAGCTTGTTTGCCACATGGGAGAAAC
TAACCAAAGAACCCAGAGCAGTCTGGAATCTTGGTTTGAGTGCTTAGCTTTCCCACAGTA
CCGTGGAGACCTTGGCCAAGTTGATGGCCTTCTGCCAGTGTACCCACCATCATCTGCAGC
TTGAACCAACATTTTGTGAATAGCTGATGTGTTGCCTTCGAAAGACCTGGGACAGTCCAT
CTGAGGCTGGTTCTGAACCTGTCACTCAACCCAGCAGGGGACCAACTGCAGCTTAAAAAC
CACTTGGCGCTTGTGAGGCCAACTCAGAGCCACTCCTCCAAGAGAGTGGGGGCCCCTTGT
GCCACCACCACCGCAAGCAGTGACTACAGTTGTGCAAAAAAGCCTTTGCTGCATTCAGAG
GCCTGCCCTCTGAGGTCACACCCTGCCTCTGCAGCATATTTATTTTTTGTGCTGGATGGA
CTCTGGTCCTTTGTTTCTTTTCTGTGCAAGCTTGGGTTTGCTGTGCACTGTGCAGCTAGA
GAACCTCTTGGCCTATTTAATTATGGCTTGTATAAATAGCTTTCTTATTTTAAACAGGTT
CCCAACTTTACTGAGCTTTGGGGGTTGGGGTATTTTTTAAAACTGCAAATGACAATGAAA
AACAACTATTGAAGATTCCCAAGAGACTGAATTGCACTAGAGATCAACCAAAAGGAAACA
TCCTTGGAATCTCAGATCACTGTT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               447-563, - strand, RNAz p=0.915588

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               447-563, - strand, RNAz p=0.915588

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-227, gnl|bosTau2|chr22 (42106806-42107020)
               

               
               3-227, gnl|canFam2|chr20 (45590862-45590474)
               

               
               3-227, gnl|dasNov1|scaffold_7365 (46078-46450)
               

               
               3-227, gnl|hg17|chr3 (45936403-45936823)
               

               
               3-227, gnl|Hg17|chr3 (45936797-45936551)
               

               
               3-227, gnl|panTro1|chr2 (47285336-47285756)
               

               
               3-227, gnl|rheMac2|chr2 (90609217-90608800)
               


               
               228-1161, gnl|bosTau2|chr22 (42107039-42107957)
               

               
               228-1161, gnl|Hg17|chr3 (45936519-45935583)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-227, gnl|bosTau2|chr22 (42106806-42107020)
               

               
               3-227, gnl|canFam2|chr20 (45590862-45590474)
               

               
               3-227, gnl|dasNov1|scaffold_7365 (46078-46450)
               

               
               3-227, gnl|hg17|chr3 (45936403-45936823)
               

               
               3-227, gnl|Hg17|chr3 (45936797-45936551)
               

               
               3-227, gnl|panTro1|chr2 (47285336-47285756)
               

               
               3-227, gnl|rheMac2|chr2 (90609217-90608800)
               


               
               228-1161, gnl|bosTau2|chr22 (42107039-42107957)
               

               
               228-1161, gnl|Hg17|chr3 (45936519-45935583)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ssp (0.271039)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ssp (0.271039)
               

               
               fcc (0.197785)
               

               
               nco (0.161734)
               

               
               tbr (0.154178)
               

               
               csk (0.140746)
               

               
               cst (0.140036)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)

	3-227, gnl\|bosTau2\|chr22 (42106806-42107020)
	3-227, gnl\|canFam2\|chr20 (45590862-45590474)
	3-227, gnl\|dasNov1\|scaffold_7365 (46078-46450)
	3-227, gnl\|hg17\|chr3 (45936403-45936823)
	3-227, gnl\|Hg17\|chr3 (45936797-45936551)
	3-227, gnl\|panTro1\|chr2 (47285336-47285756)
	3-227, gnl\|rheMac2\|chr2 (90609217-90608800)

	228-1161, gnl\|bosTau2\|chr22 (42107039-42107957)
	228-1161, gnl\|Hg17\|chr3 (45936519-45935583)

	ssp (0.271039)
	fcc (0.197785)
	nco (0.161734)
	tbr (0.154178)
	csk (0.140746)
	cst (0.140036)
	ste (0.135208)
	nmm (0.132802)