Ss1.1-Utr1-UTR010051A01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATCCCATCGCTTTGCACCTTGGGCTGGAACCTGAGATGGGTTCGCCCCCAACGATGCTC CAATTACAGAAGCAACGCAAGTTTGTCATTGTCCCGAGAAAGCGGAGCAGCGTGATTCTT GCCCATTTCAGCAGAACTGCTGGCATCCTTCAGCCAGTGGAGCCAGCGCTCCTGTTGTGA TCTTTCCAGGGAGACCCACGACCCTGCCCAGCACAGCAAAAGACCCTCTTGGAGCCGCGA CCGCTGCCCGAATCGGCGGACTTGCCCCTGCCCCAGCCGCGGCTGGTTCCGTACACCTCT TCCACTTCATTCATCTGTGGATGATTTTGAGTCCATCTTGTAAATGTTTAGCATTTTGCT GCTTTACTGCTTCTTTCTGGGGACAGTTCCAACACTGGCCGAGACCGGCGGAGAGAGGCG AGTGAGCCCGGAGAAGAGCGAAATATGGGGCCCCGGGCTCAAAGCGGCTGTCGTCCTTCC CGCGCGCTATTTCTATATTCAGGCGGTGGACACATCAGGAAATAAATTCACAACTTCTCC GGGTGAGAAAGTGTTCCAGATTAAAATCTCAGCACCAGATGAGCAGTTCACTAGAGTTGG GGTCCAGGTTTTAGATCGAAAGGATGGGTCCTTCATAGTAAGATACAGAATGTATGCCAG CTACAAAAATCTGAAGGTAGAAGTTAAATTCCAAGGTCAACATGTGGCCAAATCTCCGTA TATTTTAAAAGGGCCGGTTTACCATGAGAATTGTGACTGTCCCTTGGAAGACGCGGCGGC CTGGCTCCGCGAGATGAGCTGCCCAGAAACCATCCCTCAGATTCAGAGAGATCTGGCACA GTTCCCTAGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATCCCATCGCTTTGCACCTTGGGCTGGAACCTGAGATGGGTTCGCCCCCAACGATGCTC CAATTACAGAAGCAACGCAAGTTTGTCATTGTCCCGAGAAAGCGGAGCAGCGTGATTCTT GCCCATTTCAGCAGAACTGCTGGCATCCTTCAGCCAGTGGAGCCAGCGCTCCTGTTGTGA TCTTTCCAGGGAGACCCACGACCCTGCCCAGCACAGCAAAAGACCCTCTTGGAGCCGCGA CCGCTGCCCGAATCGGCGGACTTGCCCCTGCCCCAGCCGCGGCTGGTTCCGTACACCTCT TCCACTTCATTCATCTGTGGATGATTTTGAGTCCATCTTGTAAATGTTTAGCATTTTGCT GCTTTACTGCTTCTTTCTGGGGACAGTTCCAACACTGGCCGAGACCGGCGGAGAGAGGCG AGTGAGCCCGGAGAAGAGCGAAATATGGGGCCCCGGGCTCAAAGCGGCTGTCGTCCTTCC CGCGCGCTATTTCTATATTCAGGCGGTGGACACATCAGGAAATAAATTCACAACTTCTCC GGGTGAGAAAGTGTTCCAGATTAAAATCTCAGCACCAGATGAGCAGTTCACTAGAGTTGG GGTCCAGGTTTTAGATCGAAAGGATGGGTCCTTCATAGTAAGATACAGAATGTATGCCAG CTACAAAAATCTGAAGGTAGAAGTTAAATTCCAAGGTCAACATGTGGCCAAATCTCCGTA TATTTTAAAAGGGCCGGTTTACCATGAGAATTGTGACTGTCCCTTGGAAGACGCGGCGGC CTGGCTCCGCGAGATGAGCTGCCCAGAAACCATCCCTCAGATTCAGAGAGATCTGGCACA GTTCCCTAGTGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-525, gnl|bosTau2|chr12 (42574553-42575079) | |
| 1-525, gnl|Hg17|chr13 (102249376-102248840) | |
| 1-525, gnl|Mm7|chr1 (44359236-44358705) | |
| 526-732, gnl|bosTau2|chr12 (42576662-42576868) | |
| 526-732, gnl|canFam2|chr22 (55240193-55240424) | |
| 526-732, gnl|canFam2|chr22 (55240413-55240208) | |
| 526-732, gnl|danRer3|chr9 (27051615-27051394) | |
| 526-732, gnl|danRer3|chr9 (27051404-27051690) | |
| 526-732, gnl|dasNov1|scaffold_72682 (7213-6982) | |
| 526-732, gnl|dasNov1|scaffold_72682 (6993-7198) | |
| 526-732, gnl|echTel1|scaffold_293928 (3374-3145) | |
| 526-732, gnl|echTel1|scaffold_293928 (3154-3359) | |
| 526-732, gnl|fr1|chrUn (136868148-136867920) | |
| 526-732, gnl|fr1|chrUn (136867928-136868217) | |
| 526-732, gnl|galGal2|chr1 (135483981-135483761) | |
| 526-732, gnl|galGal2|chr1 (135483769-135483975) | |
| 526-732, gnl|hg17|chr13 (102247143-102247373) | |
| 526-732, gnl|Hg17|chr13 (102247360-102247154) | |
| 526-732, gnl|hg17|chr5 (127473251-127473458) | |
| 526-732, gnl|loxAfr1|scaffold_84 (68888-68658) | |
| 526-732, gnl|loxAfr1|scaffold_84 (68667-68873) | |
| 526-732, gnl|mm7|chr1 (44357413-44357642) | |
| 526-732, gnl|mm7|chr1 (44357635-44357428) | |
| 526-732, gnl|Mm7|chr1 (44357630-44357424) | |
| 526-732, gnl|monDom2|scaffold_11 (48271857-48271626) | |
| 526-732, gnl|monDom2|scaffold_11 (48271635-48271842) | |
| 526-732, gnl|oryCun1|scaffold_205467 (45317-45086) | |
| 526-732, gnl|oryCun1|scaffold_205467 (45095-45302) | |
| 526-732, gnl|panTro1|chr14 (85638641-85638871) | |
| 526-732, gnl|panTro1|chr4 (133822194-133822401) | |
| 526-732, gnl|rheMac2|chr17 (83097256-83097486) | |
| 526-732, gnl|rheMac2|chr6 (124512347-124512553) | |
| 526-732, gnl|rn3|chr9 (43206400-43206629) | |
| 526-732, gnl|rn3|chr9 (43206622-43206415) | |
| 526-732, gnl|tetNig1|chr2 (14928766-14928541) | |
| 526-732, gnl|tetNig1|chr2 (14928546-14928828) | |
| 526-732, gnl|xenTro1|scaffold_77 (2367421-2367652) | |
| 526-732, gnl|xenTro1|scaffold_77 (2367642-2367436) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-525, gnl|bosTau2|chr12 (42574553-42575079) | |
| 1-525, gnl|Hg17|chr13 (102249376-102248840) | |
| 1-525, gnl|Mm7|chr1 (44359236-44358705) | |
| 526-732, gnl|bosTau2|chr12 (42576662-42576868) | |
| 526-732, gnl|canFam2|chr22 (55240193-55240424) | |
| 526-732, gnl|canFam2|chr22 (55240413-55240208) | |
| 526-732, gnl|danRer3|chr9 (27051615-27051394) | |
| 526-732, gnl|danRer3|chr9 (27051404-27051690) | |
| 526-732, gnl|dasNov1|scaffold_72682 (7213-6982) | |
| 526-732, gnl|dasNov1|scaffold_72682 (6993-7198) | |
| 526-732, gnl|echTel1|scaffold_293928 (3374-3145) | |
| 526-732, gnl|echTel1|scaffold_293928 (3154-3359) | |
| 526-732, gnl|fr1|chrUn (136868148-136867920) | |
| 526-732, gnl|fr1|chrUn (136867928-136868217) | |
| 526-732, gnl|galGal2|chr1 (135483981-135483761) | |
| 526-732, gnl|galGal2|chr1 (135483769-135483975) | |
| 526-732, gnl|hg17|chr13 (102247143-102247373) | |
| 526-732, gnl|Hg17|chr13 (102247360-102247154) | |
| 526-732, gnl|hg17|chr5 (127473251-127473458) | |
| 526-732, gnl|loxAfr1|scaffold_84 (68888-68658) | |
| 526-732, gnl|loxAfr1|scaffold_84 (68667-68873) | |
| 526-732, gnl|mm7|chr1 (44357413-44357642) | |
| 526-732, gnl|mm7|chr1 (44357635-44357428) | |
| 526-732, gnl|Mm7|chr1 (44357630-44357424) | |
| 526-732, gnl|monDom2|scaffold_11 (48271857-48271626) | |
| 526-732, gnl|monDom2|scaffold_11 (48271635-48271842) | |
| 526-732, gnl|oryCun1|scaffold_205467 (45317-45086) | |
| 526-732, gnl|oryCun1|scaffold_205467 (45095-45302) | |
| 526-732, gnl|panTro1|chr14 (85638641-85638871) | |
| 526-732, gnl|panTro1|chr4 (133822194-133822401) | |
| 526-732, gnl|rheMac2|chr17 (83097256-83097486) | |
| 526-732, gnl|rheMac2|chr6 (124512347-124512553) | |
| 526-732, gnl|rn3|chr9 (43206400-43206629) | |
| 526-732, gnl|rn3|chr9 (43206622-43206415) | |
| 526-732, gnl|tetNig1|chr2 (14928766-14928541) | |
| 526-732, gnl|tetNig1|chr2 (14928546-14928828) | |
| 526-732, gnl|xenTro1|scaffold_77 (2367421-2367652) | |
| 526-732, gnl|xenTro1|scaffold_77 (2367642-2367436) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.22792) | |
| eep (0.122564) |