Non-Coding RNA Search

Ss1.1-Utr1-UTR010051A03.5

Sequence:


               
               ACATCTCCCCCTACAAGGACCTCCTGGACCCGGCCCGGTGGCGGATGCTGATCCAGCAGT
TCCGCTACGACAACTACCGGCTGCATCAGCTGGGAAACAACTCCGTGTTCACCCTCACCC
TGCAGGCCGGCCTCTCGGCCATAAAGACACCGCAGTGCTACAAGGAGGACGGCAGCTCGC
GGAGCCCCGACTGTCCGGTGTGCAGCCGCTCGCTCAACAAGCTGGCGCAGCCGCTGCCCA
TGGCGCACTGCGCCAACTCGCGCCTGGTCTGCAAGATCTCGGGAGACGTCATGAACGAGA
ACAACCCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAACTCCCTGCTCTCTA
TCCGGCAGGATGATAAGGTCGTCTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCCCAGG
CCGAGAAAGTGTACATCATGTAGGCAGGGCGGCCGCGCCTGGGCGGCCCGCGGGCCCCTG
CCTGCCTGCCTGTGTTTCTGTTTCTTGCGACCAAAGATCCGTGAGCAACGACAGACACTC
TTGGGAAGAGAGGAAGTAAGATTTAACAAACTTGTACTTGAATTTGTAACAAGTCAGCTG
TTTGACGCTTCTGAAGCGCTTTCACCTTTCAGAGAAACGTTTCCTTAAAGACTGACCACG
GGGGGGTGGGCGGGAAGCTAAGACATTTCACAACCGGAACCGAGTCCTTCCCCGTGTTCT
CACAGTTCCCTCCCTTTTGCTAATAACGAACCCTGGAGAAGGCGCTGGTCCTCGGTGATG
GCCTGGGAGCAGTGGTGGCCATGGCTGACTGGCCTGCGGGGACTCTGGCGCAAGGGACCC
TCTCACTCCTCTGTAGAGCTGCTGCCAAAACGCCAGGATGGCCGCCTGCCCGCCACCACG
CCTCTGGGCCGTGTTGGGGTGTGTGGGTTCAGGGTCACGTCACTCGTGCCGCCTTATCTC
CTGCCCGAGAATTGTACCACGTGGAACCCACTGGACCAGCGTCTGCAAAGGCCTTGCCGA
GGTTCCATAACTTTAGCTCTAAATCTCATCACGGAAACCAGTAGTTCAGTTGAAGTAACC
ACCAATGACTCTGCCAATCAGACGAGCCATTGTAGTTTACACAAAGCTGTATCGTAGAGG
TTGGTATTCAGCGCTTATTTTTGCATGTTGATGTTGATTAGCTAATAAACTGTAAATGTA
AGACATGCGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACATCTCCCCCTACAAGGACCTCCTGGACCCGGCCCGGTGGCGGATGCTGATCCAGCAGT
TCCGCTACGACAACTACCGGCTGCATCAGCTGGGAAACAACTCCGTGTTCACCCTCACCC
TGCAGGCCGGCCTCTCGGCCATAAAGACACCGCAGTGCTACAAGGAGGACGGCAGCTCGC
GGAGCCCCGACTGTCCGGTGTGCAGCCGCTCGCTCAACAAGCTGGCGCAGCCGCTGCCCA
TGGCGCACTGCGCCAACTCGCGCCTGGTCTGCAAGATCTCGGGAGACGTCATGAACGAGA
ACAACCCGCCCATGATGCTGCCCAACGGCTACGTCTACGGCTACAACTCCCTGCTCTCTA
TCCGGCAGGATGATAAGGTCGTCTGCCCGAGAACCAAAGAAGTCTTCCACTTCTCCCAGG
CCGAGAAAGTGTACATCATGTAGGCAGGGCGGCCGCGCCTGGGCGGCCCGCGGGCCCCTG
CCTGCCTGCCTGTGTTTCTGTTTCTTGCGACCAAAGATCCGTGAGCAACGACAGACACTC
TTGGGAAGAGAGGAAGTAAGATTTAACAAACTTGTACTTGAATTTGTAACAAGTCAGCTG
TTTGACGCTTCTGAAGCGCTTTCACCTTTCAGAGAAACGTTTCCTTAAAGACTGACCACG
GGGGGGTGGGCGGGAAGCTAAGACATTTCACAACCGGAACCGAGTCCTTCCCCGTGTTCT
CACAGTTCCCTCCCTTTTGCTAATAACGAACCCTGGAGAAGGCGCTGGTCCTCGGTGATG
GCCTGGGAGCAGTGGTGGCCATGGCTGACTGGCCTGCGGGGACTCTGGCGCAAGGGACCC
TCTCACTCCTCTGTAGAGCTGCTGCCAAAACGCCAGGATGGCCGCCTGCCCGCCACCACG
CCTCTGGGCCGTGTTGGGGTGTGTGGGTTCAGGGTCACGTCACTCGTGCCGCCTTATCTC
CTGCCCGAGAATTGTACCACGTGGAACCCACTGGACCAGCGTCTGCAAAGGCCTTGCCGA
GGTTCCATAACTTTAGCTCTAAATCTCATCACGGAAACCAGTAGTTCAGTTGAAGTAACC
ACCAATGACTCTGCCAATCAGACGAGCCATTGTAGTTTACACAAAGCTGTATCGTAGAGG
TTGGTATTCAGCGCTTATTTTTGCATGTTGATGTTGATTAGCTAATAAACTGTAAATGTA
AGACATGCGAAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|9929989|dbj|BAB12151.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|9929989|dbj|BAB12151.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               152-347, gnl|bosTau2|chr6 (64601200-64601005)
               

               
               152-347, gnl|Hg17|chr4 (1322040-1322235)
               

               
               152-347, gnl|Mm7|chr5 (32434758-32434953)
               


               
               348-873, gnl|bosTau2|chr6 (64600727-64600205)
               

               
               348-873, gnl|Hg17|chr4 (1322692-1323309)
               

               
               348-873, gnl|Mm7|chr5 (32435411-32436044)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-347, gnl|bosTau2|chr6 (64601200-64601005)
               

               
               152-347, gnl|Hg17|chr4 (1322040-1322235)
               

               
               152-347, gnl|Mm7|chr5 (32434758-32434953)
               


               
               348-873, gnl|bosTau2|chr6 (64600727-64600205)
               

               
               348-873, gnl|Hg17|chr4 (1322692-1323309)
               

               
               348-873, gnl|Mm7|chr5 (32435411-32436044)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cbl (0.344392)
               

               
               csp (0.322373)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.344392)
               

               
               csp (0.322373)
               

               
               mas (0.210305)
               

               
               ill (0.175593)
               

               
               mcp (0.170648)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	152-347, gnl\|bosTau2\|chr6 (64601200-64601005)
	152-347, gnl\|Hg17\|chr4 (1322040-1322235)
	152-347, gnl\|Mm7\|chr5 (32434758-32434953)

	348-873, gnl\|bosTau2\|chr6 (64600727-64600205)
	348-873, gnl\|Hg17\|chr4 (1322692-1323309)
	348-873, gnl\|Mm7\|chr5 (32435411-32436044)

	cbl (0.344392)
	csp (0.322373)
	mas (0.210305)
	ill (0.175593)
	mcp (0.170648)
	hyp (0.142837)
	pty (0.142714)
	hlv (0.139256)
	cov (0.132153)
	ese (0.126502)
	cty (0.10408)
	eje (0.0988338)