Non-Coding RNA Search

Ss1.1-Utr1-UTR010051A05.5

Sequence:


               
               AAAATCAGGGGGACAGGAAGAAAAATAGAAATGCAAATACGGGATGGTTATGGTATACAA
CCTGGAGAAAAGAAACATCATGGAACCCACTAGCAATTTCCAACAAAGCAGTAAACCCCT
TAACTGACAGAAATTCAGCACAATACACACATTGGTTAACAATTCCACCATTACCAGGGC
TGCCTTTAAAGCCAAAACAATTAACTACAATATTCAAAAACAGAATTCTCATGAGATTTG
AGAAAAATAGAGTGAAAAGGCAATGTTAGCTAAGCTCTTAGCTAAATCCACTCTTAATGG
CCCCCAGTATTTAAACTATCATGGATTAAAGCCATGAAAATAAAAATTTCAATTTGAAAT
TTTATTAGCATGTTGCTAAAATGGTCAATAAAAAACATCAACACGATAGGCTTTGTTGAC
ATCGTTGGAAAACTGCTCTCTCGTTTTTAAAACTTTATTTCCACCTTCCCCACCTTCTGA
GATTTCTGTTAGGAAAAGCCAAACTAAACATACTGGCTATGGTGTTGTAATAATGCTGGT
TTCTGGAATGTTGCCATGTCCTCCCCCTCCTTCTCTCTCTCCTTCAATCCCTGTAAAAGC
AGGGTTATTTCTGAAACGCAGCTCAAGGAGGGCACAATTTGTGGTTAAGAATGAGCGCCC
TCTTCACAAATTCAAGTTCGCGGACACCAAGTGAACTTCTCGCTGGGGGCGGGGCCGGCT
CGCCTCACCGAATTAGCTGCGCCATTTTCCCCTGGGGACCGGGAAGGCATCCCTTCTGCC
AGCAAGGGAGACTCACAGACAAATGCGGGTGGGGGGTGGCGTTTCGCTTCCCTCGGTGGA
AAGAGCAGGAAGCAGACACTGGCTAGCTGAGCCCGGAGCTGCGGATGCGAAGTCAGGAGA
CCAAAGGCTGGAGAGCTGGAAAAGTCCCAGGCCGCCTCGGGGATAACCCGGAGTCCCCAA
GTGCTCTCTTGTGGAATTATTCACAAGTGCATGAGGGACAGGCTGGATTTCTTGGAAATC
CTGCAATCTGGGGACCCAACCATACTGGAGCTGAACTGTGCCCGGAAAAGATCAATTCTC
ACCTCCCACCGGTTTGTGTGTGCGCGTTTGGGGCTGTGAGGGTCCCTTTCTAGTAAGTCG
GGTGATCATCACTGACCAGTAACTTGTGGGGGAGGCTTAGTCCCTGCTCCCCTCGGCCCC
TTCTCTTCTCCCCACTTAAAACTCAAGGGGAAGGCGCACGCTGGTGTTCCCTACACCATC
ACCACCACTGGGGGGTCTCAGCCGGGCCCACACAGCTCTTTCAGTCCCGGGACCAGTTCC
TGAGACTTCCTGCCCCTTGCCGGAGGGGTGCAAGGCTGCAGCCTGGGCACTGGCCACTGG
CGGCGGCCACTCGAGGGGTCAGGGATGATGAATCGCCGGCCTGGAAGCCCGGGCGTGGGG
GAGGGAGCAGGGCGCGGGGAGACTGGAGGAGGGGCTGTTCCCCCCGCTACTCCTTGTCGT
CCACGAGGTCGGCGAGCTCCTGGAGCACACGCAGGCGCCCACTGGCGTCGATGCGGCGCT
TCTCGCGGATGAGGTCTTCCAGGCTGTGAAACCTGGCCGTGTGCACCTTGTTCTCACCCA
GGTGCACCTTGAGATAGTACTGCTGCTGCGGGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAATCAGGGGGACAGGAAGAAAAATAGAAATGCAAATACGGGATGGTTATGGTATACAA
CCTGGAGAAAAGAAACATCATGGAACCCACTAGCAATTTCCAACAAAGCAGTAAACCCCT
TAACTGACAGAAATTCAGCACAATACACACATTGGTTAACAATTCCACCATTACCAGGGC
TGCCTTTAAAGCCAAAACAATTAACTACAATATTCAAAAACAGAATTCTCATGAGATTTG
AGAAAAATAGAGTGAAAAGGCAATGTTAGCTAAGCTCTTAGCTAAATCCACTCTTAATGG
CCCCCAGTATTTAAACTATCATGGATTAAAGCCATGAAAATAAAAATTTCAATTTGAAAT
TTTATTAGCATGTTGCTAAAATGGTCAATAAAAAACATCAACACGATAGGCTTTGTTGAC
ATCGTTGGAAAACTGCTCTCTCGTTTTTAAAACTTTATTTCCACCTTCCCCACCTTCTGA
GATTTCTGTTAGGAAAAGCCAAACTAAACATACTGGCTATGGTGTTGTAATAATGCTGGT
TTCTGGAATGTTGCCATGTCCTCCCCCTCCTTCTCTCTCTCCTTCAATCCCTGTAAAAGC
AGGGTTATTTCTGAAACGCAGCTCAAGGAGGGCACAATTTGTGGTTAAGAATGAGCGCCC
TCTTCACAAATTCAAGTTCGCGGACACCAAGTGAACTTCTCGCTGGGGGCGGGGCCGGCT
CGCCTCACCGAATTAGCTGCGCCATTTTCCCCTGGGGACCGGGAAGGCATCCCTTCTGCC
AGCAAGGGAGACTCACAGACAAATGCGGGTGGGGGGTGGCGTTTCGCTTCCCTCGGTGGA
AAGAGCAGGAAGCAGACACTGGCTAGCTGAGCCCGGAGCTGCGGATGCGAAGTCAGGAGA
CCAAAGGCTGGAGAGCTGGAAAAGTCCCAGGCCGCCTCGGGGATAACCCGGAGTCCCCAA
GTGCTCTCTTGTGGAATTATTCACAAGTGCATGAGGGACAGGCTGGATTTCTTGGAAATC
CTGCAATCTGGGGACCCAACCATACTGGAGCTGAACTGTGCCCGGAAAAGATCAATTCTC
ACCTCCCACCGGTTTGTGTGTGCGCGTTTGGGGCTGTGAGGGTCCCTTTCTAGTAAGTCG
GGTGATCATCACTGACCAGTAACTTGTGGGGGAGGCTTAGTCCCTGCTCCCCTCGGCCCC
TTCTCTTCTCCCCACTTAAAACTCAAGGGGAAGGCGCACGCTGGTGTTCCCTACACCATC
ACCACCACTGGGGGGTCTCAGCCGGGCCCACACAGCTCTTTCAGTCCCGGGACCAGTTCC
TGAGACTTCCTGCCCCTTGCCGGAGGGGTGCAAGGCTGCAGCCTGGGCACTGGCCACTGG
CGGCGGCCACTCGAGGGGTCAGGGATGATGAATCGCCGGCCTGGAAGCCCGGGCGTGGGG
GAGGGAGCAGGGCGCGGGGAGACTGGAGGAGGGGCTGTTCCCCCCGCTACTCCTTGTCGT
CCACGAGGTCGGCGAGCTCCTGGAGCACACGCAGGCGCCCACTGGCGTCGATGCGGCGCT
TCTCGCGGATGAGGTCTTCCAGGCTGTGAAACCTGGCCGTGTGCACCTTGTTCTCACCCA
GGTGCACCTTGAGATAGTACTGCTGCTGCGGGGGCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55594659|ref|XP_530423.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55594659|ref|XP_530423.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               186-446, - strand, RNAz p=0.925042
               

               
               829-1058, + strand, RNAz p=0.997041

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               186-446, - strand, RNAz p=0.925042
               

               
               829-1058, + strand, RNAz p=0.997041

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_145175, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_145175, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1656, gnl|bosTau2|chr11 (62092848-62094520)
               

               
               1-1656, gnl|Hg17|chr2 (14727110-14725411)
               

               
               1-1656, gnl|Mm7|chr12 (14207361-14208966)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1656, gnl|bosTau2|chr11 (62092848-62094520)
               

               
               1-1656, gnl|Hg17|chr2 (14727110-14725411)
               

               
               1-1656, gnl|Mm7|chr12 (14207361-14208966)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               amn (0.417711)
               

               
               cty (0.41632)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cty (0.41632)
               

               
               ova (0.258264)
               

               
               pgl (0.236967)
               

               
               mgp (0.230681)
               

               
               cut (0.169924)
               

               
               csk (0.140746)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               spc (0.113366)

	186-446, - strand, RNAz p=0.925042
	829-1058, + strand, RNAz p=0.997041

	1-1656, gnl\|bosTau2\|chr11 (62092848-62094520)
	1-1656, gnl\|Hg17\|chr2 (14727110-14725411)
	1-1656, gnl\|Mm7\|chr12 (14207361-14208966)

	amn (0.417711)
	cty (0.41632)
	ova (0.258264)
	pgl (0.236967)
	mgp (0.230681)
	cut (0.169924)
	csk (0.140746)
	ute (0.132784)
	cov (0.132153)
	sug (0.127291)
	spc (0.113366)