Ss1.1-Utr1-UTR010051B02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACGCCGCCGGCAGTGTGGGCTGCGCTTGGGCGCCGCGTTCCCGCACTCATGCAGGGCAG CACCCGGAGAGCGGGCGTCATGACCGACGTCCACCGGCGCTTCCTCCAGTTGCTGATGAC CCACGGCGTGCTGGAGGAGTGCGACATCAAGCGCTTGCAGAGGCACTGCTACAAGGTCCA TGACCGCAACGCTCCTGTTGAGAAGTTGGAGGACTTCATCAACAACATTAACAGTGTCCT GGAGTCTTTGTACATTGAGATAAAGAAGGGAGTCACAGAAGACGATGGGAGACCCATCTA CGCGCTGGTGAACCTTGCCACGACTTCAGTGTCCAAAATGGCCTCAGATTTTGCAGAGAA TGAGCTGGATCTGTTTAGAAAGGCCCTGGAACTCATTATCGACTCCGAAAGCGGCTTCGC GTCTTCCACAAATATCTTGAACCTGGTCGATCAGCTCAAAGGCAAGAAGATGAGGAAGAA GGAGGCCGAGCAAGTGCTGCAGAAGTTTGTACAAAACAAATGGCTCATTGAGAAGGAAGG GGAGTTCACCCTGCACGGCCGCGCCATCCTGGAGATGGAGCAGTACATCCGGGAGGTGTA CCCCGACGCCGTGAAGGTCTGCAACATCTGCCACGGCCTCCTCATCCAGGGTCAAAGCTG TGAGACGTGTGGGATCAGGATGCACTTGCCTTGTGTGGCCAAGTACTTCCAGTCCAACGC GGAGCCGCGCTGCCCCCACTGTAACGACTACTGGCCCCACGAGATACCAGAAGTCTTCGA CCCCGAGAAGGAGAGGGAGGCTGGTGTCTCCAAATCGAACAAAAGGTCCTCGCGATCCAG GCAGCACTAGGCGGCCGCCGCCTTCACGGGGTGACCGACTGGCCGGCGCGTTTGGAAGAG AAGCATCAGTTGCACGTTTTACACGCATCGCCTCCTTTGTCTTTCACACTCACTTGTTAA CGGGTTTGGAATAAACTTAAGAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACGCCGCCGGCAGTGTGGGCTGCGCTTGGGCGCCGCGTTCCCGCACTCATGCAGGGCAG CACCCGGAGAGCGGGCGTCATGACCGACGTCCACCGGCGCTTCCTCCAGTTGCTGATGAC CCACGGCGTGCTGGAGGAGTGCGACATCAAGCGCTTGCAGAGGCACTGCTACAAGGTCCA TGACCGCAACGCTCCTGTTGAGAAGTTGGAGGACTTCATCAACAACATTAACAGTGTCCT GGAGTCTTTGTACATTGAGATAAAGAAGGGAGTCACAGAAGACGATGGGAGACCCATCTA CGCGCTGGTGAACCTTGCCACGACTTCAGTGTCCAAAATGGCCTCAGATTTTGCAGAGAA TGAGCTGGATCTGTTTAGAAAGGCCCTGGAACTCATTATCGACTCCGAAAGCGGCTTCGC GTCTTCCACAAATATCTTGAACCTGGTCGATCAGCTCAAAGGCAAGAAGATGAGGAAGAA GGAGGCCGAGCAAGTGCTGCAGAAGTTTGTACAAAACAAATGGCTCATTGAGAAGGAAGG GGAGTTCACCCTGCACGGCCGCGCCATCCTGGAGATGGAGCAGTACATCCGGGAGGTGTA CCCCGACGCCGTGAAGGTCTGCAACATCTGCCACGGCCTCCTCATCCAGGGTCAAAGCTG TGAGACGTGTGGGATCAGGATGCACTTGCCTTGTGTGGCCAAGTACTTCCAGTCCAACGC GGAGCCGCGCTGCCCCCACTGTAACGACTACTGGCCCCACGAGATACCAGAAGTCTTCGA CCCCGAGAAGGAGAGGGAGGCTGGTGTCTCCAAATCGAACAAAAGGTCCTCGCGATCCAG GCAGCACTAGGCGGCCGCCGCCTTCACGGGGTGACCGACTGGCCGGCGCGTTTGGAAGAG AAGCATCAGTTGCACGTTTTACACGCATCGCCTCCTTTGTCTTTCACACTCACTTGTTAA CGGGTTTGGAATAAACTTAAGAGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 40-197, gnl|bosTau2|chr25 (21421749-21421592) | |
| 40-197, gnl|Hg17|chr16 (27176402-27176244) | |
| 40-197, gnl|Mm7|chr7 (121583041-121582884) | |
| 387-532, gnl|bosTau2|chr25 (21401037-21400892) | |
| 387-532, gnl|canFam2|chr6 (22378734-22378558) | |
| 387-532, gnl|danRer3|chr3 (39991687-39991503) | |
| 387-532, gnl|dasNov1|scaffold_11397 (19718-19535) | |
| 387-532, gnl|echTel1|scaffold_232912 (7819-8000) | |
| 387-532, gnl|hg17|chr16 (27151806-27151987) | |
| 387-532, gnl|Hg17|chr16 (27151968-27151823) | |
| 387-532, gnl|loxAfr1|scaffold_20055 (30586-30766) | |
| 387-532, gnl|mm7|chr7 (121567668-121567834) | |
| 387-532, gnl|Mm7|chr7 (121567816-121567671) | |
| 387-532, gnl|oryCun1|scaffold_150579 (4418-4596) | |
| 387-532, gnl|panTro1|chr18 (27851880-27852061) | |
| 387-532, gnl|rheMac2|chr20 (25695363-25695543) | |
| 387-532, gnl|rn3|chr1 (184682947-184683113) | |
| 387-532, gnl|tetNig1|chr18 (5144466-5144618) | |
| 387-532, gnl|xenTro1|scaffold_254 (561883-562043) | |
| 768-978, gnl|bosTau2|chr25 (21394311-21394104) | |
| 768-978, gnl|Hg17|chr16 (27144061-27143822) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 40-197, gnl|bosTau2|chr25 (21421749-21421592) | |
| 40-197, gnl|Hg17|chr16 (27176402-27176244) | |
| 40-197, gnl|Mm7|chr7 (121583041-121582884) | |
| 387-532, gnl|bosTau2|chr25 (21401037-21400892) | |
| 387-532, gnl|canFam2|chr6 (22378734-22378558) | |
| 387-532, gnl|danRer3|chr3 (39991687-39991503) | |
| 387-532, gnl|dasNov1|scaffold_11397 (19718-19535) | |
| 387-532, gnl|echTel1|scaffold_232912 (7819-8000) | |
| 387-532, gnl|hg17|chr16 (27151806-27151987) | |
| 387-532, gnl|Hg17|chr16 (27151968-27151823) | |
| 387-532, gnl|loxAfr1|scaffold_20055 (30586-30766) | |
| 387-532, gnl|mm7|chr7 (121567668-121567834) | |
| 387-532, gnl|Mm7|chr7 (121567816-121567671) | |
| 387-532, gnl|oryCun1|scaffold_150579 (4418-4596) | |
| 387-532, gnl|panTro1|chr18 (27851880-27852061) | |
| 387-532, gnl|rheMac2|chr20 (25695363-25695543) | |
| 387-532, gnl|rn3|chr1 (184682947-184683113) | |
| 387-532, gnl|tetNig1|chr18 (5144466-5144618) | |
| 387-532, gnl|xenTro1|scaffold_254 (561883-562043) | |
| 768-978, gnl|bosTau2|chr25 (21394311-21394104) | |
| 768-978, gnl|Hg17|chr16 (27144061-27143822) |
| Expressed library(ies): 18 entry(ies) | More info |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
| eye (0.341006) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) |
| Expressed library(ies): 18 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| fhi (0.339155) | |
| nco (0.323468) | |
| cag (0.302389) | |
| hlv (0.278513) | |
| fce (0.271592) | |
| ebs (0.236602) | |
| med (0.232504) | |
| ece (0.229305) | |
| tes (0.207814) | |
| csp (0.161186) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cbl (0.114797) |