Non-Coding RNA Search

Ss1.1-Utr1-UTR010051F02.5

Sequence:


               
               TACTGATGATACTCCTGTGGTTCTTGTGGGAAACAAGTCTGACCTAAAGCAACTAAGACA
GGTCTCCAAGGAAGAAGGATTGGCTTTGGCCCGAGAATTCAGCTGCCCCTTTTTTGAGAC
ATCTGCTGCATACCGCTACTACATTGATGATGTCTTCCATGCTCTCGTACGGGAGATACG
TAGGAAAGAAAAGGAGGCAGTACTGGCCATGGAGAAAAAATCTAAACCCAAAAACAGCGT
CTGGAAGAGGCTAAAATCACCATTCCGGAAGAAGAAAGATTCAGTAACTTGAAAGGAAGC
TGGGAAGTGTGTATCTGTGAACTGCAGAGCTTAATCAAAGCAGTCCAGTAACCTGCATTA
GTGAGCGTGGTGCTCGTTCTTTCTCCTGCTAGGACCATTATTTTAAAAATAACTGATGAA
GGGGACAAACCCACTAGGAGTTTTCAGTGATGCGGTATTTAAAATATTGTGTCTCAGCTA
ATTCTGATGTTATTAACCCAGTGGAGCACTGTCTACTTTTAAATCGTCACATTAGAATTT
GATCTGCCACTGTTTTGGGTTCTGTTGCTGATATTAATTAATTAATGTAAATGTTTTATA
CCCAGGGGAATACGAATGCCATGTACATCTGACTCAGCTCACAAAAGGAATTTTTTTGCC
ATGCACTATTCTGCAATCTCTTTCAACTCAATTTCCTGGGACTATCCTGGGAAAGAACCT
CAGTCTTTACTAAAAAATTCATGCTGTGCTTCCTGGAGACAGAACAAAAATCTTATCAGG
GAATCAGTTCTAAAGAGATCATTGCTAAAGTTCAGCAAATAGCTGTGGAACTTCTGTTGT
GGATTGTGGAATTATAAGATTGGGGAAATCAGGCCATATGTTTTCACGGGAACTTGGCGA
GAAAAAGGTGGGATCAGAACGGTGTTCCCCAGAGGAGCCTGTTTTTTCTAAGTACACATA
TGACCTAAATGCACTGGGATGCATGAGAACAAACAGAAGCATATAAAATGTAATGAAGGC
TTCTTCTGTGAGGTTATTTCTTTCTTCCTTTCAGGGTTTTGCCTTTCTTTACCTTCAAAG
GTAAATAAACACTTTGGGAACCATTACTGGATTACAAAACTCTTGGTTAATCTTAATCCT
TGGTTAGGACAACCGTGGCCTTATACAGGTTTGTTTTTCCCCCAGAGATGGACACACCAA
TATATTTACATTAATTGCTTCCTAGTGCTTTCCCTTAGCTTCCCTACTCTCTAGAAGAGC
CAGGCCTGGCAAAATGTTTTTTAGGCCCTTTGTCAGACCAATCGCATTTTCCATACAGAA
AAAACATCAGGATTAGTAAAATCGTGTATGTGCCTCGTTGAAATAGACAATCACTAGACT
CAGTGTTCTACAAAAGCCTGTAGCATTTCTGTGTAATGAGCCAGTCTTGAAGCTTTAAAA
TTGCCATGCGTTGAGTTTCTCATTGAAGATTTCTTTCTTTTGTTTTTGCTTTTTATGGCC
GAACCCATGGCATTTGGAGGTTCCCAGGCTAGGGGTCAAATCAGAGCTGTAGCTGCTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TACTGATGATACTCCTGTGGTTCTTGTGGGAAACAAGTCTGACCTAAAGCAACTAAGACA
GGTCTCCAAGGAAGAAGGATTGGCTTTGGCCCGAGAATTCAGCTGCCCCTTTTTTGAGAC
ATCTGCTGCATACCGCTACTACATTGATGATGTCTTCCATGCTCTCGTACGGGAGATACG
TAGGAAAGAAAAGGAGGCAGTACTGGCCATGGAGAAAAAATCTAAACCCAAAAACAGCGT
CTGGAAGAGGCTAAAATCACCATTCCGGAAGAAGAAAGATTCAGTAACTTGAAAGGAAGC
TGGGAAGTGTGTATCTGTGAACTGCAGAGCTTAATCAAAGCAGTCCAGTAACCTGCATTA
GTGAGCGTGGTGCTCGTTCTTTCTCCTGCTAGGACCATTATTTTAAAAATAACTGATGAA
GGGGACAAACCCACTAGGAGTTTTCAGTGATGCGGTATTTAAAATATTGTGTCTCAGCTA
ATTCTGATGTTATTAACCCAGTGGAGCACTGTCTACTTTTAAATCGTCACATTAGAATTT
GATCTGCCACTGTTTTGGGTTCTGTTGCTGATATTAATTAATTAATGTAAATGTTTTATA
CCCAGGGGAATACGAATGCCATGTACATCTGACTCAGCTCACAAAAGGAATTTTTTTGCC
ATGCACTATTCTGCAATCTCTTTCAACTCAATTTCCTGGGACTATCCTGGGAAAGAACCT
CAGTCTTTACTAAAAAATTCATGCTGTGCTTCCTGGAGACAGAACAAAAATCTTATCAGG
GAATCAGTTCTAAAGAGATCATTGCTAAAGTTCAGCAAATAGCTGTGGAACTTCTGTTGT
GGATTGTGGAATTATAAGATTGGGGAAATCAGGCCATATGTTTTCACGGGAACTTGGCGA
GAAAAAGGTGGGATCAGAACGGTGTTCCCCAGAGGAGCCTGTTTTTTCTAAGTACACATA
TGACCTAAATGCACTGGGATGCATGAGAACAAACAGAAGCATATAAAATGTAATGAAGGC
TTCTTCTGTGAGGTTATTTCTTTCTTCCTTTCAGGGTTTTGCCTTTCTTTACCTTCAAAG
GTAAATAAACACTTTGGGAACCATTACTGGATTACAAAACTCTTGGTTAATCTTAATCCT
TGGTTAGGACAACCGTGGCCTTATACAGGTTTGTTTTTCCCCCAGAGATGGACACACCAA
TATATTTACATTAATTGCTTCCTAGTGCTTTCCCTTAGCTTCCCTACTCTCTAGAAGAGC
CAGGCCTGGCAAAATGTTTTTTAGGCCCTTTGTCAGACCAATCGCATTTTCCATACAGAA
AAAACATCAGGATTAGTAAAATCGTGTATGTGCCTCGTTGAAATAGACAATCACTAGACT
CAGTGTTCTACAAAAGCCTGTAGCATTTCTGTGTAATGAGCCAGTCTTGAAGCTTTAAAA
TTGCCATGCGTTGAGTTTCTCATTGAAGATTTCTTTCTTTTGTTTTTGCTTTTTATGGCC
GAACCCATGGCATTTGGAGGTTCCCAGGCTAGGGGTCAAATCAGAGCTGTAGCTGCTGGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50811628|ref|XP_422862.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50811628|ref|XP_422862.1|

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               60-1476, gnl|bosTau2|chr3 (10706004-10707404)
               

               
               60-1476, gnl|Hg17|chr1 (152683484-152682121)
               

               
               60-1476, gnl|Mm7|chr3 (88842911-88844336)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-1476, gnl|bosTau2|chr3 (10706004-10707404)
               

               
               60-1476, gnl|Hg17|chr1 (152683484-152682121)
               

               
               60-1476, gnl|Mm7|chr3 (88842911-88844336)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               nlu (0.191681)
               

               
               gul (0.177588)
               

               
               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               med (0.116252)

	60-1476, gnl\|bosTau2\|chr3 (10706004-10707404)
	60-1476, gnl\|Hg17\|chr1 (152683484-152682121)
	60-1476, gnl\|Mm7\|chr3 (88842911-88844336)

	liv (0.292569)
	mgp (0.230681)
	nlu (0.191681)
	gul (0.177588)
	fhi (0.169578)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	med (0.116252)