Ss1.1-Utr1-UTR010051G02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTTTGTTTGCTTAGCTACTGACAACACGCCAGTTGCTCCCCTTCTTTCCAAGTAAAAGT GGCCTGGCCTGAGATTAGGGTGAGACCCCAGCCCTAGGCTGGGGTTCCTTCCAGATAGAA GAGACGGATTCGGAGGGGCTACAGACCAAGATTATAGAAAACCAGACATATGATGAGCGT CTAGAGATTAACGACTCGGAAGAGGTTGCAAGTATTTATACTCCTCCCTCAAGACACAAA GGACTTCCTCATTCTGCCCATCTTCCTAACAAGACTATGGCTGATAACAGTAGTGATGAG TGTGAAGAGGAAAATAACAAGGAAAAGAAGAAGACCTCGCAGCTGACACCTCAGCGGGGC TTTAGTGAAAACGATGATGATGACGACGATGATGACTCATCTGAAACCGATTCTGATGAT GATGAAGAAGAGCACCGGGCCCCCCTGGAAGGGGCCTACGATCCTGCAGATTATGAGCAT TTGCCAGTTTCTGCTGAGATTAAGGAACTCTTCCAATACATCAGTAGATATACACCTCAG TTGATTGACCTGGACCACAAACTGAAACCTTTCATTCCTGATTTTATCCCAGCTGTTGGG GATATTGATGCATTCTTAAAGGTTCCACGTCCTGATGGAAAGCCTGACAACCTCGGCCTG TTGGTATTAGACGAGCCTTCTACAAAGCAGTCAGACCCTACGGTGCTCTCCCTTTGGTTA ACAGAGAATTCCAAACAGCACAACGTCACACAACATATGAAAGTCAAGAGTCTGGAAGAT GCAGAAAAGAATCCCAAAGCCATTGACACATGGATCGAGAGCATTTCTGAGTTACACCGT TCCAAGGCCCCTGCCACTGTGCACTACACCAGGCCTATGCCAGATATTGACACACTGATG CAGGAATGGTCTCCAGAGTTTGAAGAACTTTTGGGGAAGGTGAGCCTGCCCACAGCAGAG ATTGACTGCAGCCTGGAAGGGTACATTGACATGATCTGTGCCATCCTGGACATCCCTATC TACAAGAGTCGGATTCAGTCCCTCCATCTGCTCTTTTCCCTCTACTCAGAATTTAAGAAC TCACAGCATTTTAAAGCACTAGCTGAAGGCAAGAAAGCATTCACCCCTCCATCCAATTCC ACCTCCCAAGCCGGAGATGCAGAGACATTAACCTTCAGCTGAGGTACCCCCCGTGTGGCT CTGTTTCAAGGCTGAGCCGACTCCTCTGCCCCATCTGAGAAGGAGGGATCAGCCACCTGG CGGCCTTTCCTGCCTCACAGCTCGACTTGGGCACGGTGCACACACTACACCCTCTCTGCC AGAAAGCACTGCATGTGATCGTTAAGTGGCTAATGCCCATCTCAGATTTCCTTCCCATGG GAATTGTGCGTGTACACCACTGTGATACATGGGTTTAAGTTGGACGGATGGAAATTTCTG GGATCCCAAGTTGCTCAGGTTGGGAGGAAGGCTTAAAAGATGTTCTTTTTGAGATAGCAG TAGAATTGTTTTCTTTGATTTCTTAAAATTAATCGGCAAATATTTTACAAATAAATTGCT CTTATCTTGCAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTTTGTTTGCTTAGCTACTGACAACACGCCAGTTGCTCCCCTTCTTTCCAAGTAAAAGT GGCCTGGCCTGAGATTAGGGTGAGACCCCAGCCCTAGGCTGGGGTTCCTTCCAGATAGAA GAGACGGATTCGGAGGGGCTACAGACCAAGATTATAGAAAACCAGACATATGATGAGCGT CTAGAGATTAACGACTCGGAAGAGGTTGCAAGTATTTATACTCCTCCCTCAAGACACAAA GGACTTCCTCATTCTGCCCATCTTCCTAACAAGACTATGGCTGATAACAGTAGTGATGAG TGTGAAGAGGAAAATAACAAGGAAAAGAAGAAGACCTCGCAGCTGACACCTCAGCGGGGC TTTAGTGAAAACGATGATGATGACGACGATGATGACTCATCTGAAACCGATTCTGATGAT GATGAAGAAGAGCACCGGGCCCCCCTGGAAGGGGCCTACGATCCTGCAGATTATGAGCAT TTGCCAGTTTCTGCTGAGATTAAGGAACTCTTCCAATACATCAGTAGATATACACCTCAG TTGATTGACCTGGACCACAAACTGAAACCTTTCATTCCTGATTTTATCCCAGCTGTTGGG GATATTGATGCATTCTTAAAGGTTCCACGTCCTGATGGAAAGCCTGACAACCTCGGCCTG TTGGTATTAGACGAGCCTTCTACAAAGCAGTCAGACCCTACGGTGCTCTCCCTTTGGTTA ACAGAGAATTCCAAACAGCACAACGTCACACAACATATGAAAGTCAAGAGTCTGGAAGAT GCAGAAAAGAATCCCAAAGCCATTGACACATGGATCGAGAGCATTTCTGAGTTACACCGT TCCAAGGCCCCTGCCACTGTGCACTACACCAGGCCTATGCCAGATATTGACACACTGATG CAGGAATGGTCTCCAGAGTTTGAAGAACTTTTGGGGAAGGTGAGCCTGCCCACAGCAGAG ATTGACTGCAGCCTGGAAGGGTACATTGACATGATCTGTGCCATCCTGGACATCCCTATC TACAAGAGTCGGATTCAGTCCCTCCATCTGCTCTTTTCCCTCTACTCAGAATTTAAGAAC TCACAGCATTTTAAAGCACTAGCTGAAGGCAAGAAAGCATTCACCCCTCCATCCAATTCC ACCTCCCAAGCCGGAGATGCAGAGACATTAACCTTCAGCTGAGGTACCCCCCGTGTGGCT CTGTTTCAAGGCTGAGCCGACTCCTCTGCCCCATCTGAGAAGGAGGGATCAGCCACCTGG CGGCCTTTCCTGCCTCACAGCTCGACTTGGGCACGGTGCACACACTACACCCTCTCTGCC AGAAAGCACTGCATGTGATCGTTAAGTGGCTAATGCCCATCTCAGATTTCCTTCCCATGG GAATTGTGCGTGTACACCACTGTGATACATGGGTTTAAGTTGGACGGATGGAAATTTCTG GGATCCCAAGTTGCTCAGGTTGGGAGGAAGGCTTAAAAGATGTTCTTTTTGAGATAGCAG TAGAATTGTTTTCTTTGATTTCTTAAAATTAATCGGCAAATATTTTACAAATAAATTGCT CTTATCTTGCAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 756-1198, - strand, RNAz p=0.700149 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 756-1198, - strand, RNAz p=0.700149 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 320-453, gnl|bosTau2|chr15 (14997214-14997347) | |
| 320-453, gnl|Hg17|chr11 (117932972-117932830) | |
| 320-453, gnl|Mm7|chr9 (44716443-44716579) | |
| 620-750, gnl|bosTau2|chr15 (14999609-14999739) | |
| 620-750, gnl|Hg17|chr11 (117930514-117930384) | |
| 620-750, gnl|Mm7|chr9 (44718675-44718805) | |
| 751-873, gnl|bosTau2|chr15 (15000809-15000931) | |
| 751-873, gnl|canFam2|chr5 (18199698-18199553) | |
| 751-873, gnl|danRer3|chr1 (53357273-53357132) | |
| 751-873, gnl|dasNov1|scaffold_18463 (28948-29093) | |
| 751-873, gnl|echTel1|scaffold_316157 (106496-106352) | |
| 751-873, gnl|galGal2|chr24 (5163791-5163646) | |
| 751-873, gnl|hg17|chr11 (117928135-117928280) | |
| 751-873, gnl|Hg17|chr11 (117928260-117928138) | |
| 751-873, gnl|loxAfr1|scaffold_7278 (45396-45540) | |
| 751-873, gnl|mm7|chr9 (44720766-44720621) | |
| 751-873, gnl|Mm7|chr9 (44720639-44720761) | |
| 751-873, gnl|monDom2|scaffold_2 (120118917-120118772) | |
| 751-873, gnl|oryCun1|scaffold_207873 (171810-171955) | |
| 751-873, gnl|panTro1|chr9 (119936725-119936871) | |
| 751-873, gnl|rheMac2|chr14 (116945778-116945923) | |
| 751-873, gnl|rn3|chr8 (47751017-47750872) | |
| 751-873, gnl|xenTro1|scaffold_75 (323249-323400) | |
| 1080-1571, gnl|bosTau2|chr15 (15005831-15006316) | |
| 1080-1571, gnl|Hg17|chr11 (117920943-117920450) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 320-453, gnl|bosTau2|chr15 (14997214-14997347) | |
| 320-453, gnl|Hg17|chr11 (117932972-117932830) | |
| 320-453, gnl|Mm7|chr9 (44716443-44716579) | |
| 620-750, gnl|bosTau2|chr15 (14999609-14999739) | |
| 620-750, gnl|Hg17|chr11 (117930514-117930384) | |
| 620-750, gnl|Mm7|chr9 (44718675-44718805) | |
| 751-873, gnl|bosTau2|chr15 (15000809-15000931) | |
| 751-873, gnl|canFam2|chr5 (18199698-18199553) | |
| 751-873, gnl|danRer3|chr1 (53357273-53357132) | |
| 751-873, gnl|dasNov1|scaffold_18463 (28948-29093) | |
| 751-873, gnl|echTel1|scaffold_316157 (106496-106352) | |
| 751-873, gnl|galGal2|chr24 (5163791-5163646) | |
| 751-873, gnl|hg17|chr11 (117928135-117928280) | |
| 751-873, gnl|Hg17|chr11 (117928260-117928138) | |
| 751-873, gnl|loxAfr1|scaffold_7278 (45396-45540) | |
| 751-873, gnl|mm7|chr9 (44720766-44720621) | |
| 751-873, gnl|Mm7|chr9 (44720639-44720761) | |
| 751-873, gnl|monDom2|scaffold_2 (120118917-120118772) | |
| 751-873, gnl|oryCun1|scaffold_207873 (171810-171955) | |
| 751-873, gnl|panTro1|chr9 (119936725-119936871) | |
| 751-873, gnl|rheMac2|chr14 (116945778-116945923) | |
| 751-873, gnl|rn3|chr8 (47751017-47750872) | |
| 751-873, gnl|xenTro1|scaffold_75 (323249-323400) | |
| 1080-1571, gnl|bosTau2|chr15 (15005831-15006316) | |
| 1080-1571, gnl|Hg17|chr11 (117920943-117920450) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| amn (0.417711) | |
| fli (0.405762) | |
| nco (0.323468) | |
| fce (0.271592) | |
| cov (0.264306) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| fli (0.405762) | |
| nco (0.323468) | |
| fce (0.271592) | |
| cov (0.264306) | |
| eep (0.245128) | |
| eru (0.240096) | |
| ecc (0.23007) | |
| fcc (0.197785) | |
| sag (0.182715) | |
| gul (0.177588) | |
| ill (0.175593) | |
| eye (0.170503) | |
| cut (0.169924) | |
| cki (0.165235) | |
| tbr (0.154178) | |
| lin (0.145603) | |
| spl (0.143184) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| bla (0.124347) | |
| cly (0.120642) | |
| cty (0.10408) | |
| eje (0.0988338) | |
| ldo (0.0970026) |