Ss1.1-Utr1-UTR010051G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGAAGTCACTCCGTGAGGCAGTGGCGACGGCGGCGGCGAGAGGATGAACAACAAGTTC GACGCATTGAAAGACGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAG AAAGATGGTGAGAAGGAAAAAACAGAACGAGACAAGAGTCAGAGCAGCAGCAAGAGGAAG GCTGTTGTCCCTGGGCCAGCAGAGCACCCCCTGCAGTATAACTACACTTTCTGGTACTCC AGGAGAACCCCCGGTCGTCCCACTAGCTCACAGAGCTACGAACAGAATATCAAACAGATT GGCACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTATAGCCACATGGTACGTCCCGGG GACCTGACAGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATTAAACCCATGTGGGAG GACGATGCAAATAAAAACGGTGGCAAGTGGATCATTCGGCTGCGGAAGGGCTTGGCGTCC CGTTGCTGGGAGAACCTCATCCTGGCCATGCTGGGGGAACAGTTCATGGTTGGGGAGGAG ATCTGTGGGGCCGTGGTCTCGGTCCGGTTTCAGGAGGACATTATTTCCATTTGGAACAAG ACTGCCAGCGACCAGGCCACCACAGCCCGCATCCGGGACACCCTGCGGCGCGTGCTTAAC CTACCTCCCAACACCATTATGGAGTACAAAACCCATACCGACAGCATCAAAATGCCAGGC AGGCTGGGCCCCCAAAGGCTCCTTTTTCAAAACCTCTGGAAGCCGCGGTTGAACGTGCCA TGACCCTCTCCCTCTCTGGATGGCACCGTCCTTGAAGCTGGCATCATCGGAGTCTCTTGT TCTGTTGGCGTGCTACCTGGAAGAGCCTTCTGTCCCGGACAAGAGGAATGAAGAGCAATT CCGCTAGACACCCTCCAGCATCGCTGACTTTATAAAGCGGAGAAAACGGAAAACGTGACT TTATAATAGACAAACTTTTTTTAAGAGGGTTCCGTGGGGGGCGGGTCAGCCTTTCATTTT GCTGTGTGCTGTCCAGGTGCCTCTCGGGCATTCTGCCGTGCTCTCCTCTGCTGTACGAAG GGCATCGTGACCACGTGTACAAGCCAGAGCCGTGGGCTGAGAGTGACCAGTATTATGAAT GTCTGTGCCTCCAGGAAGAGCTTCGTGTTGGAGAGTCCCGGAATAGCTATAAATGCTCTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGAAGTCACTCCGTGAGGCAGTGGCGACGGCGGCGGCGAGAGGATGAACAACAAGTTC GACGCATTGAAAGACGATGACAGTGGGGACCATGATCAGAATGAAGAAAACAGCACACAG AAAGATGGTGAGAAGGAAAAAACAGAACGAGACAAGAGTCAGAGCAGCAGCAAGAGGAAG GCTGTTGTCCCTGGGCCAGCAGAGCACCCCCTGCAGTATAACTACACTTTCTGGTACTCC AGGAGAACCCCCGGTCGTCCCACTAGCTCACAGAGCTACGAACAGAATATCAAACAGATT GGCACCTTTGCCTCTGTGGAGCAGTTCTGGAGGTTTTATAGCCACATGGTACGTCCCGGG GACCTGACAGGCCACAGTGACTTCCATCTCTTCAAAGAAGGAATTAAACCCATGTGGGAG GACGATGCAAATAAAAACGGTGGCAAGTGGATCATTCGGCTGCGGAAGGGCTTGGCGTCC CGTTGCTGGGAGAACCTCATCCTGGCCATGCTGGGGGAACAGTTCATGGTTGGGGAGGAG ATCTGTGGGGCCGTGGTCTCGGTCCGGTTTCAGGAGGACATTATTTCCATTTGGAACAAG ACTGCCAGCGACCAGGCCACCACAGCCCGCATCCGGGACACCCTGCGGCGCGTGCTTAAC CTACCTCCCAACACCATTATGGAGTACAAAACCCATACCGACAGCATCAAAATGCCAGGC AGGCTGGGCCCCCAAAGGCTCCTTTTTCAAAACCTCTGGAAGCCGCGGTTGAACGTGCCA TGACCCTCTCCCTCTCTGGATGGCACCGTCCTTGAAGCTGGCATCATCGGAGTCTCTTGT TCTGTTGGCGTGCTACCTGGAAGAGCCTTCTGTCCCGGACAAGAGGAATGAAGAGCAATT CCGCTAGACACCCTCCAGCATCGCTGACTTTATAAAGCGGAGAAAACGGAAAACGTGACT TTATAATAGACAAACTTTTTTTAAGAGGGTTCCGTGGGGGGCGGGTCAGCCTTTCATTTT GCTGTGTGCTGTCCAGGTGCCTCTCGGGCATTCTGCCGTGCTCTCCTCTGCTGTACGAAG GGCATCGTGACCACGTGTACAAGCCAGAGCCGTGGGCTGAGAGTGACCAGTATTATGAAT GTCTGTGCCTCCAGGAAGAGCTTCGTGTTGGAGAGTCCCGGAATAGCTATAAATGCTCTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 15-640, gnl|bosTau2|chr4 (5176713-5177318) | |
| 15-640, gnl|Hg17|chr3 (116480632-116481250) | |
| 15-640, gnl|Mm7|chr1 (87120258-87126835) | |
| 179-318, gnl|bosTau2|chr2 (71965676-71965815) | |
| 179-318, gnl|canFam2|chr25 (47193717-47193878) | |
| 179-318, gnl|canFam2|chr25 (47193732-47193854) | |
| 179-318, gnl|danRer3|chr19 (62864030-62863890) | |
| 179-318, gnl|danRer3|chr2 (41084916-41085035) | |
| 179-318, gnl|dasNov1|scaffold_4675 (26102-26263) | |
| 179-318, gnl|dasNov1|scaffold_4675 (26117-26239) | |
| 179-318, gnl|echTel1|scaffold_257374 (489-623) | |
| 179-318, gnl|echTel1|scaffold_257374 (489-610) | |
| 179-318, gnl|fr1|chrUn (136059243-136059089) | |
| 179-318, gnl|fr1|chrUn (136059223-136059107) | |
| 179-318, gnl|galGal2|chr9 (14978143-14977986) | |
| 179-318, gnl|hg17|chr2 (233248083-233248244) | |
| 179-318, gnl|Hg17|chr2 (233248097-233248236) | |
| 179-318, gnl|hg17|chr20 (20588485-20588607) | |
| 179-318, gnl|loxAfr1|scaffold_196136 (952-791) | |
| 179-318, gnl|loxAfr1|scaffold_196136 (937-815) | |
| 179-318, gnl|mm7|chr1 (87121580-87121741) | |
| 179-318, gnl|mm7|chr1 (87121595-87121717) | |
| 179-318, gnl|Mm7|chr1 (87121594-87121733) | |
| 179-318, gnl|monDom2|scaffold_11 (19120954-19121076) | |
| 179-318, gnl|monDom2|scaffold_167 (1051451-1051621) | |
| 179-318, gnl|oryCun1|scaffold_97843 (3722-3564) | |
| 179-318, gnl|oryCun1|scaffold_97843 (3710-3588) | |
| 179-318, gnl|panTro1|chr13 (123840014-123840175) | |
| 179-318, gnl|panTro1|chr21 (20503325-20503447) | |
| 179-318, gnl|rheMac2|chr10 (53954054-53954176) | |
| 179-318, gnl|rheMac2|chr12 (96448745-96448906) | |
| 179-318, gnl|rn3|chr9 (86211582-86211743) | |
| 179-318, gnl|rn3|chr9 (86211597-86211719) | |
| 179-318, gnl|tetNig1|chr15 (5056018-5056178) | |
| 179-318, gnl|xenTro1|scaffold_1130 (182604-182759) | |
| 419-574, gnl|bosTau2|chr2 (71972171-71972326) | |
| 419-574, gnl|canFam2|chr25 (47200929-47201099) | |
| 419-574, gnl|danRer3|chr19 (62861840-62861682) | |
| 419-574, gnl|dasNov1|scaffold_4675 (32144-32313) | |
| 419-574, gnl|echTel1|scaffold_306328 (5459-5288) | |
| 419-574, gnl|fr1|chrUn (136058801-136058631) | |
| 419-574, gnl|galGal2|chr9 (14973132-14972966) | |
| 419-574, gnl|hg17|chr2 (233257031-233257202) | |
| 419-574, gnl|Hg17|chr2 (233257042-233257197) | |
| 419-574, gnl|loxAfr1|scaffold_16361 (28809-28638) | |
| 419-574, gnl|mm7|chr1 (87126513-87126684) | |
| 419-574, gnl|Mm7|chr1 (87126524-87126679) | |
| 419-574, gnl|monDom2|scaffold_167 (1056201-1056369) | |
| 419-574, gnl|oryCun1|scaffold_214973 (36223-36391) | |
| 419-574, gnl|panTro1|chr13 (123848478-123848649) | |
| 419-574, gnl|rheMac2|chr12 (96456840-96457011) | |
| 419-574, gnl|rn3|chr9 (86217396-86217567) | |
| 419-574, gnl|tetNig1|chr15 (5056446-5056616) | |
| 419-574, gnl|xenTro1|scaffold_1130 (185600-185771) | |
| 898-1200, gnl|bosTau2|chr2 (71984682-71984989) | |
| 898-1200, gnl|Hg17|chr2 (233271305-233271609) | |
| 898-1200, gnl|Mm7|chr1 (87138705-87139004) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 15-640, gnl|bosTau2|chr4 (5176713-5177318) | |
| 15-640, gnl|Hg17|chr3 (116480632-116481250) | |
| 15-640, gnl|Mm7|chr1 (87120258-87126835) | |
| 179-318, gnl|bosTau2|chr2 (71965676-71965815) | |
| 179-318, gnl|canFam2|chr25 (47193717-47193878) | |
| 179-318, gnl|canFam2|chr25 (47193732-47193854) | |
| 179-318, gnl|danRer3|chr19 (62864030-62863890) | |
| 179-318, gnl|danRer3|chr2 (41084916-41085035) | |
| 179-318, gnl|dasNov1|scaffold_4675 (26102-26263) | |
| 179-318, gnl|dasNov1|scaffold_4675 (26117-26239) | |
| 179-318, gnl|echTel1|scaffold_257374 (489-623) | |
| 179-318, gnl|echTel1|scaffold_257374 (489-610) | |
| 179-318, gnl|fr1|chrUn (136059243-136059089) | |
| 179-318, gnl|fr1|chrUn (136059223-136059107) | |
| 179-318, gnl|galGal2|chr9 (14978143-14977986) | |
| 179-318, gnl|hg17|chr2 (233248083-233248244) | |
| 179-318, gnl|Hg17|chr2 (233248097-233248236) | |
| 179-318, gnl|hg17|chr20 (20588485-20588607) | |
| 179-318, gnl|loxAfr1|scaffold_196136 (952-791) | |
| 179-318, gnl|loxAfr1|scaffold_196136 (937-815) | |
| 179-318, gnl|mm7|chr1 (87121580-87121741) | |
| 179-318, gnl|mm7|chr1 (87121595-87121717) | |
| 179-318, gnl|Mm7|chr1 (87121594-87121733) | |
| 179-318, gnl|monDom2|scaffold_11 (19120954-19121076) | |
| 179-318, gnl|monDom2|scaffold_167 (1051451-1051621) | |
| 179-318, gnl|oryCun1|scaffold_97843 (3722-3564) | |
| 179-318, gnl|oryCun1|scaffold_97843 (3710-3588) | |
| 179-318, gnl|panTro1|chr13 (123840014-123840175) | |
| 179-318, gnl|panTro1|chr21 (20503325-20503447) | |
| 179-318, gnl|rheMac2|chr10 (53954054-53954176) | |
| 179-318, gnl|rheMac2|chr12 (96448745-96448906) | |
| 179-318, gnl|rn3|chr9 (86211582-86211743) | |
| 179-318, gnl|rn3|chr9 (86211597-86211719) | |
| 179-318, gnl|tetNig1|chr15 (5056018-5056178) | |
| 179-318, gnl|xenTro1|scaffold_1130 (182604-182759) | |
| 419-574, gnl|bosTau2|chr2 (71972171-71972326) | |
| 419-574, gnl|canFam2|chr25 (47200929-47201099) | |
| 419-574, gnl|danRer3|chr19 (62861840-62861682) | |
| 419-574, gnl|dasNov1|scaffold_4675 (32144-32313) | |
| 419-574, gnl|echTel1|scaffold_306328 (5459-5288) | |
| 419-574, gnl|fr1|chrUn (136058801-136058631) | |
| 419-574, gnl|galGal2|chr9 (14973132-14972966) | |
| 419-574, gnl|hg17|chr2 (233257031-233257202) | |
| 419-574, gnl|Hg17|chr2 (233257042-233257197) | |
| 419-574, gnl|loxAfr1|scaffold_16361 (28809-28638) | |
| 419-574, gnl|mm7|chr1 (87126513-87126684) | |
| 419-574, gnl|Mm7|chr1 (87126524-87126679) | |
| 419-574, gnl|monDom2|scaffold_167 (1056201-1056369) | |
| 419-574, gnl|oryCun1|scaffold_214973 (36223-36391) | |
| 419-574, gnl|panTro1|chr13 (123848478-123848649) | |
| 419-574, gnl|rheMac2|chr12 (96456840-96457011) | |
| 419-574, gnl|rn3|chr9 (86217396-86217567) | |
| 419-574, gnl|tetNig1|chr15 (5056446-5056616) | |
| 419-574, gnl|xenTro1|scaffold_1130 (185600-185771) | |
| 898-1200, gnl|bosTau2|chr2 (71984682-71984989) | |
| 898-1200, gnl|Hg17|chr2 (233271305-233271609) | |
| 898-1200, gnl|Mm7|chr1 (87138705-87139004) |
| Expressed library(ies): 19 entry(ies) | More info |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
| fbs (0.350693) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 19 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.350693) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| gul (0.177588) | |
| ton (0.1755) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| ste (0.135208) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| eru (0.120048) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |