Ss1.1-Utr1-UTR010051G10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCACTTGAATCACGTATTAGTATGAAGGCCCGAGTGTGTGTGGGTTTCGCTGTAAAAT CCAAGGCCGTGTGTGTTGTTAGGGGAGGGCCCCTCGGCCCCCGGCGGGCCCGCCTGCCTG TTCATCCCCACTGTCTTAACGGCGCAGTTCTGCCCCATGGGATCAGATTTATTTTTAACA AATTATTATAAATGAGGATTTAAAATGTTTAATGTGGGCTGGACTTTTTATCTTTAGTTT GAGAATCTGTAAGGAGTGTTACCACAAATGTGACCTGAAGGGTGTGTGTGTATCTTTGAT TCTAAATCAGATTGTGTTGTATCTTGACAAATACCAAGTACCCCAGTGGCTTTTTCTTTT TTTCTTTACCAGTTTGTGTTCTCTCCTCCTTTTGAGCCATTTCCCATGAAGCCAAAATGG AGTGTTGGAATTAAACTAGGTTGAAAATGTGTGTCCAGGGTTTAAAGTTCAGATTGTGTT TCCCGTGGAAGGACAGGTATGTTTATTAACTAATTTTCTTTCAAAGGATTATTGTTTTAC AGTTTCAATTCCAGATCATATTTTTGATATGCTGCATGCCAAAAATACCTACCTGTTCTG GGGTAGAGGGAAAAAAACCTAATATTCTACCTTACTGTTAAGAGTTCAGAATGAATTTTC ACTGAGAAAGCCTTTTGGTTCCGTTTTAGAGATAAATAAGTTGCTTGTTTTTGAGCACTT GCCAGTCATGATTGTATTTCAGAACAATCCAAATAAATGTAAGCACGGTGTATTTTGAAG GCTCTGCAGATTTGCAAACTAAGCGGCTCATTCCCTAACCCCTGGTAGTCATCCTCATTC TAGAAGTGAGAATTCCCGGCGGAAATGGATTTGTCCTGTAGCACCAGCGGGGGCAGTGGG GGGCCTGTCCAGACGTCTTCCCGCGCGGTCCTCTGAGCACCAGGCCCCGTGTACGTCTGT GGCCAGTGGTGATCACGTAGGGACCGAGGAGCCTGCGTTTGATGCAGACGCCGTTGCAGC AGAGACAGGAAGCTTCGTAGCAATCAAGTGGGGGAGTCGTTTGCTTTCTGTTTTAAATAG GAACTCGTTTCCTAAAACGCAAATCCTTGACCTGTCAGTGTAATCTCAGTTTGTATTAGC TTTTGAATGATCCCATTGAGGAAGTGTACGGATCGTGAACTGTGAATAAAGGGAAAGTAA GCAGAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCACTTGAATCACGTATTAGTATGAAGGCCCGAGTGTGTGTGGGTTTCGCTGTAAAAT CCAAGGCCGTGTGTGTTGTTAGGGGAGGGCCCCTCGGCCCCCGGCGGGCCCGCCTGCCTG TTCATCCCCACTGTCTTAACGGCGCAGTTCTGCCCCATGGGATCAGATTTATTTTTAACA AATTATTATAAATGAGGATTTAAAATGTTTAATGTGGGCTGGACTTTTTATCTTTAGTTT GAGAATCTGTAAGGAGTGTTACCACAAATGTGACCTGAAGGGTGTGTGTGTATCTTTGAT TCTAAATCAGATTGTGTTGTATCTTGACAAATACCAAGTACCCCAGTGGCTTTTTCTTTT TTTCTTTACCAGTTTGTGTTCTCTCCTCCTTTTGAGCCATTTCCCATGAAGCCAAAATGG AGTGTTGGAATTAAACTAGGTTGAAAATGTGTGTCCAGGGTTTAAAGTTCAGATTGTGTT TCCCGTGGAAGGACAGGTATGTTTATTAACTAATTTTCTTTCAAAGGATTATTGTTTTAC AGTTTCAATTCCAGATCATATTTTTGATATGCTGCATGCCAAAAATACCTACCTGTTCTG GGGTAGAGGGAAAAAAACCTAATATTCTACCTTACTGTTAAGAGTTCAGAATGAATTTTC ACTGAGAAAGCCTTTTGGTTCCGTTTTAGAGATAAATAAGTTGCTTGTTTTTGAGCACTT GCCAGTCATGATTGTATTTCAGAACAATCCAAATAAATGTAAGCACGGTGTATTTTGAAG GCTCTGCAGATTTGCAAACTAAGCGGCTCATTCCCTAACCCCTGGTAGTCATCCTCATTC TAGAAGTGAGAATTCCCGGCGGAAATGGATTTGTCCTGTAGCACCAGCGGGGGCAGTGGG GGGCCTGTCCAGACGTCTTCCCGCGCGGTCCTCTGAGCACCAGGCCCCGTGTACGTCTGT GGCCAGTGGTGATCACGTAGGGACCGAGGAGCCTGCGTTTGATGCAGACGCCGTTGCAGC AGAGACAGGAAGCTTCGTAGCAATCAAGTGGGGGAGTCGTTTGCTTTCTGTTTTAAATAG GAACTCGTTTCCTAAAACGCAAATCCTTGACCTGTCAGTGTAATCTCAGTTTGTATTAGC TTTTGAATGATCCCATTGAGGAAGTGTACGGATCGTGAACTGTGAATAAAGGGAAAGTAA GCAGAAAAAAAA |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-644, gnl|bosTau2|chr5 (72979884-72980529) | |
| 1-644, gnl|Hg17|chr22 (43903251-43903920) | |
| 685-961, gnl|bosTau2|chr5 (72980543-72980806) | |
| 685-961, gnl|canFam2|chr10 (23885833-23885984) | |
| 685-961, gnl|dasNov1|scaffold_12552 (19873-19727) | |
| 685-961, gnl|echTel1|scaffold_295732 (3708-3590) | |
| 685-961, gnl|hg17|chr14 (64133621-64133764) | |
| 685-961, gnl|Hg17|chr22 (43903946-43904174) | |
| 685-961, gnl|mm7|chr15 (85025043-85024911) | |
| 685-961, gnl|oryCun1|scaffold_213588 (70497-70664) | |
| 685-961, gnl|panTro1|chr15 (63702040-63702183) | |
| 685-961, gnl|rheMac2|chr10 (89174166-89174025) | |
| 685-961, gnl|rn3|chr7 (122998955-122998825) | |
| 1004-1206, gnl|bosTau2|chr5 (72980824-72981034) | |
| 1004-1206, gnl|canFam2|chr10 (23885786-23885609) | |
| 1004-1206, gnl|canFam2|chr10 (23885597-23885741) | |
| 1004-1206, gnl|dasNov1|scaffold_12552 (19926-20111) | |
| 1004-1206, gnl|dasNov1|scaffold_12552 (20123-19973) | |
| 1004-1206, gnl|echTel1|scaffold_295732 (3751-3920) | |
| 1004-1206, gnl|echTel1|scaffold_295732 (3930-3782) | |
| 1004-1206, gnl|hg17|chr14 (64133364-64133521) | |
| 1004-1206, gnl|hg17|chr22 (43904223-43904418) | |
| 1004-1206, gnl|Hg17|chr22 (43904222-43904429) | |
| 1004-1206, gnl|loxAfr1|scaffold_105540 (2983-3153) | |
| 1004-1206, gnl|loxAfr1|scaffold_105540 (3162-3011) | |
| 1004-1206, gnl|mm7|chr15 (85025084-85025271) | |
| 1004-1206, gnl|mm7|chr15 (85025282-85025131) | |
| 1004-1206, gnl|Mm7|chr15 (85025079-85025281) | |
| 1004-1206, gnl|monDom2|scaffold_107 (138938-139123) | |
| 1004-1206, gnl|monDom2|scaffold_107 (139135-138981) | |
| 1004-1206, gnl|oryCun1|scaffold_168684 (4831-4650) | |
| 1004-1206, gnl|oryCun1|scaffold_168684 (4650-4790) | |
| 1004-1206, gnl|panTro1|chr15 (63701783-63701940) | |
| 1004-1206, gnl|panTro1|chr23 (44227465-44227660) | |
| 1004-1206, gnl|rheMac2|chr10 (89174215-89174406) | |
| 1004-1206, gnl|rheMac2|chr10 (89174418-89174265) | |
| 1004-1206, gnl|rn3|chr7 (122998991-122999174) | |
| 1004-1206, gnl|rn3|chr7 (122999185-122999037) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-644, gnl|bosTau2|chr5 (72979884-72980529) | |
| 1-644, gnl|Hg17|chr22 (43903251-43903920) | |
| 685-961, gnl|bosTau2|chr5 (72980543-72980806) | |
| 685-961, gnl|canFam2|chr10 (23885833-23885984) | |
| 685-961, gnl|dasNov1|scaffold_12552 (19873-19727) | |
| 685-961, gnl|echTel1|scaffold_295732 (3708-3590) | |
| 685-961, gnl|hg17|chr14 (64133621-64133764) | |
| 685-961, gnl|Hg17|chr22 (43903946-43904174) | |
| 685-961, gnl|mm7|chr15 (85025043-85024911) | |
| 685-961, gnl|oryCun1|scaffold_213588 (70497-70664) | |
| 685-961, gnl|panTro1|chr15 (63702040-63702183) | |
| 685-961, gnl|rheMac2|chr10 (89174166-89174025) | |
| 685-961, gnl|rn3|chr7 (122998955-122998825) | |
| 1004-1206, gnl|bosTau2|chr5 (72980824-72981034) | |
| 1004-1206, gnl|canFam2|chr10 (23885786-23885609) | |
| 1004-1206, gnl|canFam2|chr10 (23885597-23885741) | |
| 1004-1206, gnl|dasNov1|scaffold_12552 (19926-20111) | |
| 1004-1206, gnl|dasNov1|scaffold_12552 (20123-19973) | |
| 1004-1206, gnl|echTel1|scaffold_295732 (3751-3920) | |
| 1004-1206, gnl|echTel1|scaffold_295732 (3930-3782) | |
| 1004-1206, gnl|hg17|chr14 (64133364-64133521) | |
| 1004-1206, gnl|hg17|chr22 (43904223-43904418) | |
| 1004-1206, gnl|Hg17|chr22 (43904222-43904429) | |
| 1004-1206, gnl|loxAfr1|scaffold_105540 (2983-3153) | |
| 1004-1206, gnl|loxAfr1|scaffold_105540 (3162-3011) | |
| 1004-1206, gnl|mm7|chr15 (85025084-85025271) | |
| 1004-1206, gnl|mm7|chr15 (85025282-85025131) | |
| 1004-1206, gnl|Mm7|chr15 (85025079-85025281) | |
| 1004-1206, gnl|monDom2|scaffold_107 (138938-139123) | |
| 1004-1206, gnl|monDom2|scaffold_107 (139135-138981) | |
| 1004-1206, gnl|oryCun1|scaffold_168684 (4831-4650) | |
| 1004-1206, gnl|oryCun1|scaffold_168684 (4650-4790) | |
| 1004-1206, gnl|panTro1|chr15 (63701783-63701940) | |
| 1004-1206, gnl|panTro1|chr23 (44227465-44227660) | |
| 1004-1206, gnl|rheMac2|chr10 (89174215-89174406) | |
| 1004-1206, gnl|rheMac2|chr10 (89174418-89174265) | |
| 1004-1206, gnl|rn3|chr7 (122998991-122999174) | |
| 1004-1206, gnl|rn3|chr7 (122999185-122999037) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| cje (0.330469) | |
| bla (0.248694) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cty (0.10408) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cje (0.330469) | |
| bla (0.248694) | |
| ece (0.229305) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| cki (0.165235) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| pla (0.133672) | |
| kid (0.129735) | |
| thg (0.126791) | |
| cty (0.10408) |