Non-Coding RNA Search

Ss1.1-Utr1-UTR010051H06.5

Sequence:


               
               GAGACTGCTGCAGCAGTAGCTACTGGTGGGAGCCTAATGTGGCAGAGGGGCTGCCGACAC
CAACACGGAGGCTGAGGGCCCCCAAAAGGAGTGCTGGAGGTACCACCGCCATCCTCCTCG
CCCACCCCTCTGCCCTCCTGACGCGATCCTCGCCTACGGGGGGTCTTCCCCTCCCAGCAC
TTGCAAGCTGCCGGCTCATCGCCTGCCAATCCTCCTTGGACACAGGCTCACCGCAAAAGA
AGCTGCGAGGTGTCCGATTTGGGCACTTGAGGCCCTAGATCCGGGGCGGTGGACGCCAGG
CAAGGCAAGACATGAAAACCGCCAACTCACAGGAGGCCGAAGGGCAACAAACCAGGGCAG
TTGCAGGACGGGCCACTGGGTGTGCAAACATGACGAAGAAAAAAGCCTCCCAAAAGAAGC
AGAGAGGCAGACCTTCGTCCCAGCCCCGCAGGAACATCGTGGGCTGCAGAATTTCACACG
GGTGGAAGGAAGGCGATGAGCCCATCACCCAGTGGAAAGGAACCGTTCTGGATCAGGTGC
CTATAAATCCTTCTCTTTATCTGGTGAAATATGATGGAATTGACTGTGTCTATGGACTGG
AACTTCACAGAGATGAAAGAGTTTTGTCTCTTAAAATTCTTTCTGACAGGGTGGCATCAT
CTCAAGTCAGTGATGCAAACCTTGCAAATACCATAATTGGTAAAGCTGTGGAACATATGT
TTGAGGGTGAGCATGGTTCTAAGGATGAATGGAGAGGAATGGTCTTAGCCCAAGCACCTA
TCATGAAAGCCTGGTTTTATATTACCTATGAGAAAGATCCTGTCTTGTACATGTACCAGC
TTCTAGATGATTATAAAGAAGGAGACCTCCGTATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGACTGCTGCAGCAGTAGCTACTGGTGGGAGCCTAATGTGGCAGAGGGGCTGCCGACAC
CAACACGGAGGCTGAGGGCCCCCAAAAGGAGTGCTGGAGGTACCACCGCCATCCTCCTCG
CCCACCCCTCTGCCCTCCTGACGCGATCCTCGCCTACGGGGGGTCTTCCCCTCCCAGCAC
TTGCAAGCTGCCGGCTCATCGCCTGCCAATCCTCCTTGGACACAGGCTCACCGCAAAAGA
AGCTGCGAGGTGTCCGATTTGGGCACTTGAGGCCCTAGATCCGGGGCGGTGGACGCCAGG
CAAGGCAAGACATGAAAACCGCCAACTCACAGGAGGCCGAAGGGCAACAAACCAGGGCAG
TTGCAGGACGGGCCACTGGGTGTGCAAACATGACGAAGAAAAAAGCCTCCCAAAAGAAGC
AGAGAGGCAGACCTTCGTCCCAGCCCCGCAGGAACATCGTGGGCTGCAGAATTTCACACG
GGTGGAAGGAAGGCGATGAGCCCATCACCCAGTGGAAAGGAACCGTTCTGGATCAGGTGC
CTATAAATCCTTCTCTTTATCTGGTGAAATATGATGGAATTGACTGTGTCTATGGACTGG
AACTTCACAGAGATGAAAGAGTTTTGTCTCTTAAAATTCTTTCTGACAGGGTGGCATCAT
CTCAAGTCAGTGATGCAAACCTTGCAAATACCATAATTGGTAAAGCTGTGGAACATATGT
TTGAGGGTGAGCATGGTTCTAAGGATGAATGGAGAGGAATGGTCTTAGCCCAAGCACCTA
TCATGAAAGCCTGGTTTTATATTACCTATGAGAAAGATCCTGTCTTGTACATGTACCAGC
TTCTAGATGATTATAAAGAAGGAGACCTCCGTATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13111701|gb|AAH00044.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13111701|gb|AAH00044.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               117-231, - strand, RNAz p=0.99616
               

               
               587-746, - strand, RNAz p=0.991781

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               117-231, - strand, RNAz p=0.99616
               

               
               587-746, - strand, RNAz p=0.991781

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-274, gnl|bosTau2|chrX (28528066-28528334)
               

               
               1-274, gnl|Hg17|chrX (56980131-56979855)
               

               
               1-274, gnl|Mm7|chrX (148590928-148591202)
               


               
               308-876, gnl|bosTau2|chrX (28008682-28008114)
               

               
               308-876, gnl|Hg17|chrX (57030087-57029519)
               

               
               308-876, gnl|Mm7|chrX (148591865-148592427)
               


               
               342-868, gnl|bosTau2|chr14 (46407561-46408094)
               

               
               342-868, gnl|Hg17|chr9 (88306961-88313054)
               

               
               342-868, gnl|Mm7|chr13 (50170960-50176122)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-274, gnl|bosTau2|chrX (28528066-28528334)
               

               
               1-274, gnl|Hg17|chrX (56980131-56979855)
               

               
               1-274, gnl|Mm7|chrX (148590928-148591202)
               


               
               308-876, gnl|bosTau2|chrX (28008682-28008114)
               

               
               308-876, gnl|Hg17|chrX (57030087-57029519)
               

               
               308-876, gnl|Mm7|chrX (148591865-148592427)
               


               
               342-868, gnl|bosTau2|chr14 (46407561-46408094)
               

               
               342-868, gnl|Hg17|chr9 (88306961-88313054)
               

               
               342-868, gnl|Mm7|chr13 (50170960-50176122)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               ste (0.135208)
               

               
               jej (0.0989218)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ste (0.135208)
               

               
               jej (0.0989218)

	117-231, - strand, RNAz p=0.99616
	587-746, - strand, RNAz p=0.991781

	1-274, gnl\|bosTau2\|chrX (28528066-28528334)
	1-274, gnl\|Hg17\|chrX (56980131-56979855)
	1-274, gnl\|Mm7\|chrX (148590928-148591202)

	308-876, gnl\|bosTau2\|chrX (28008682-28008114)
	308-876, gnl\|Hg17\|chrX (57030087-57029519)
	308-876, gnl\|Mm7\|chrX (148591865-148592427)

	342-868, gnl\|bosTau2\|chr14 (46407561-46408094)
	342-868, gnl\|Hg17\|chr9 (88306961-88313054)
	342-868, gnl\|Mm7\|chr13 (50170960-50176122)